EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00000017452 (Gene tree)
Gene ID: 492002
Gene Symbol: PABPC5
Alias: PABP5
Full Name: poly(A) binding protein cytoplasmic 5
Gene Type: protein_coding
Species: Canis_familiaris
Status: putative
Strand: Plus strand
Length: 1149 bases
Position: chrX:68491165-68492313
Accession: 492002
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00000025717	RRM_5	PF13893.6	1.7e-11	1	2
ENSCAFP00000025717	RRM_5	PF13893.6	1.7e-11	2	2
ENSCAFP00000025717	RRM_1	PF00076.22	6.4e-80	1	4
ENSCAFP00000025717	RRM_1	PF00076.22	6.4e-80	2	4
ENSCAFP00000025717	RRM_1	PF00076.22	6.4e-80	3	4
ENSCAFP00000025717	RRM_1	PF00076.22	6.4e-80	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00000027652	PABPC5-201	1149	XM_005641545	ENSCAFP00000025717	382 (aa)	XP_005641602	F1PQV8

Gene Model

Click here to download ENSCAFG00000017452's gene model file

Pathways

Pathway ID	Pathway Name	Source
cfa03013	RNA transport	KEGG
cfa03015	mRNA surveillance pathway	KEGG
cfa03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000017452's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00000017452	PABPC5	94	35.802	ENSCAFG00000001688	ELAVL2	82	35.802
ENSCAFG00000017452	PABPC5	63	34.483	ENSCAFG00000017695	-	55	34.524
ENSCAFG00000017452	PABPC5	98	63.873	ENSCAFG00000000567	PABPC1	57	65.730
ENSCAFG00000017452	PABPC5	95	67.493	ENSCAFG00000003081	PABPC4	58	67.697
ENSCAFG00000017452	PABPC5	94	60.833	ENSCAFG00000009573	PABPC1L	58	60.674
ENSCAFG00000017452	PABPC5	60	36.709	ENSCAFG00000012794	CELF3	55	34.524
ENSCAFG00000017452	PABPC5	74	30.508	ENSCAFG00000011735	TRNAU1AP	58	30.409

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00000017452	PABPC5	99	96.850	ENSG00000174740	PABPC5	99	96.850	Homo_sapiens
ENSCAFG00000017452	PABPC5	99	98.950	ENSAMEG00000020114	PABPC5	100	98.950	Ailuropoda_melanoleuca
ENSCAFG00000017452	PABPC5	99	96.850	ENSANAG00000005063	PABPC5	99	96.850	Aotus_nancymaae
ENSCAFG00000017452	PABPC5	100	96.335	ENSBTAG00000019942	PABPC5	100	96.335	Bos_taurus
ENSCAFG00000017452	PABPC5	99	96.588	ENSCJAG00000003665	PABPC5	99	96.588	Callithrix_jacchus
ENSCAFG00000017452	PABPC5	100	96.335	ENSCHIG00000019004	PABPC5	100	96.335	Capra_hircus
ENSCAFG00000017452	PABPC5	100	96.859	ENSTSYG00000036351	PABPC5	100	96.859	Carlito_syrichta
ENSCAFG00000017452	PABPC5	99	86.387	ENSCAPG00000010714	PABPC5	100	86.387	Cavia_aperea
ENSCAFG00000017452	PABPC5	100	93.455	ENSCPOG00000002555	PABPC5	100	93.455	Cavia_porcellus
ENSCAFG00000017452	PABPC5	99	96.850	ENSCCAG00000032154	PABPC5	99	96.850	Cebus_capucinus
ENSCAFG00000017452	PABPC5	99	96.850	ENSCATG00000043083	PABPC5	99	96.850	Cercocebus_atys
ENSCAFG00000017452	PABPC5	100	95.026	ENSCLAG00000000647	PABPC5	100	95.026	Chinchilla_lanigera
ENSCAFG00000017452	PABPC5	99	96.850	ENSCSAG00000000065	PABPC5	99	96.850	Chlorocebus_sabaeus
ENSCAFG00000017452	PABPC5	99	96.850	ENSCANG00000011473	PABPC5	99	96.850	Colobus_angolensis_palliatus
ENSCAFG00000017452	PABPC5	100	93.455	ENSCGRG00000018699	Pabpc5	100	93.455	Cricetulus_griseus_crigri
ENSCAFG00000017452	PABPC5	100	78.329	ENSETEG00000011832	PABPC5	100	78.329	Echinops_telfairi
ENSCAFG00000017452	PABPC5	100	97.644	ENSEASG00005014396	PABPC5	100	97.644	Equus_asinus_asinus
ENSCAFG00000017452	PABPC5	100	97.644	ENSECAG00000003452	PABPC5	100	97.644	Equus_caballus
ENSCAFG00000017452	PABPC5	100	99.215	ENSFCAG00000004998	PABPC5	100	99.215	Felis_catus
ENSCAFG00000017452	PABPC5	100	95.812	ENSFDAG00000000126	PABPC5	100	95.812	Fukomys_damarensis
ENSCAFG00000017452	PABPC5	99	96.850	ENSGGOG00000007622	PABPC5	99	96.850	Gorilla_gorilla
ENSCAFG00000017452	PABPC5	95	95.413	ENSJJAG00000011960	Pabpc5	100	95.413	Jaculus_jaculus
ENSCAFG00000017452	PABPC5	99	96.850	ENSMFAG00000024561	PABPC5	99	96.850	Macaca_fascicularis
ENSCAFG00000017452	PABPC5	99	96.850	ENSMMUG00000011562	PABPC5	99	96.850	Macaca_mulatta
ENSCAFG00000017452	PABPC5	99	96.850	ENSMNEG00000037604	PABPC5	99	96.850	Macaca_nemestrina
ENSCAFG00000017452	PABPC5	99	96.850	ENSMLEG00000028318	PABPC5	99	96.850	Mandrillus_leucophaeus
ENSCAFG00000017452	PABPC5	100	95.812	ENSMICG00000041706	PABPC5	100	95.812	Microcebus_murinus
ENSCAFG00000017452	PABPC5	100	95.288	ENSMOCG00000001554	Pabpc5	100	95.288	Microtus_ochrogaster
ENSCAFG00000017452	PABPC5	99	93.158	MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.158	Mus_caroli
ENSCAFG00000017452	PABPC5	99	93.684	ENSMUSG00000034732	Pabpc5	99	93.684	Mus_musculus
ENSCAFG00000017452	PABPC5	100	93.979	MGP_PahariEiJ_G0031908	Pabpc5	100	93.979	Mus_pahari
ENSCAFG00000017452	PABPC5	99	93.684	MGP_SPRETEiJ_G0034533	Pabpc5	99	93.684	Mus_spretus
ENSCAFG00000017452	PABPC5	100	98.429	ENSMPUG00000018465	PABPC5	100	98.429	Mustela_putorius_furo
ENSCAFG00000017452	PABPC5	100	96.073	ENSMLUG00000008244	PABPC5	100	96.073	Myotis_lucifugus
ENSCAFG00000017452	PABPC5	95	94.495	ENSNGAG00000004371	Pabpc5	100	94.495	Nannospalax_galili
ENSCAFG00000017452	PABPC5	99	96.850	ENSNLEG00000035086	PABPC5	99	96.850	Nomascus_leucogenys
ENSCAFG00000017452	PABPC5	98	97.727	ENSOPRG00000000856	PABPC5	99	97.727	Ochotona_princeps
ENSCAFG00000017452	PABPC5	100	96.597	ENSOCUG00000010919	PABPC5	100	96.597	Oryctolagus_cuniculus
ENSCAFG00000017452	PABPC5	100	96.073	ENSOGAG00000006882	PABPC5	100	96.073	Otolemur_garnettii
ENSCAFG00000017452	PABPC5	100	96.597	ENSOARG00000010260	PABPC5	100	96.597	Ovis_aries
ENSCAFG00000017452	PABPC5	99	96.588	ENSPPAG00000007378	PABPC5	99	96.588	Pan_paniscus
ENSCAFG00000017452	PABPC5	100	99.215	ENSPPRG00000010742	PABPC5	100	99.215	Panthera_pardus
ENSCAFG00000017452	PABPC5	100	99.215	ENSPTIG00000001480	PABPC5	100	99.215	Panthera_tigris_altaica
ENSCAFG00000017452	PABPC5	99	96.850	ENSPTRG00000022078	PABPC5	99	96.850	Pan_troglodytes
ENSCAFG00000017452	PABPC5	99	96.850	ENSPANG00000018282	PABPC5	99	96.850	Papio_anubis
ENSCAFG00000017452	PABPC5	100	93.979	ENSPEMG00000000171	Pabpc5	100	93.979	Peromyscus_maniculatus_bairdii
ENSCAFG00000017452	PABPC5	99	96.850	ENSPPYG00000020526	PABPC5	99	96.850	Pongo_abelii
ENSCAFG00000017452	PABPC5	99	97.091	ENSPCAG00000015577	PABPC5	100	97.091	Procavia_capensis
ENSCAFG00000017452	PABPC5	100	96.597	ENSPCOG00000000676	PABPC5	100	96.597	Propithecus_coquereli
ENSCAFG00000017452	PABPC5	100	97.382	ENSPVAG00000006465	PABPC5	100	97.382	Pteropus_vampyrus
ENSCAFG00000017452	PABPC5	100	93.979	ENSRNOG00000003354	Pabpc5	100	93.979	Rattus_norvegicus
ENSCAFG00000017452	PABPC5	99	96.850	ENSRBIG00000011760	PABPC5	99	96.850	Rhinopithecus_bieti
ENSCAFG00000017452	PABPC5	99	96.850	ENSRROG00000036708	PABPC5	99	96.850	Rhinopithecus_roxellana
ENSCAFG00000017452	PABPC5	99	96.850	ENSSBOG00000008658	PABPC5	99	96.850	Saimiri_boliviensis_boliviensis
ENSCAFG00000017452	PABPC5	100	94.241	ENSSARG00000014012	PABPC5	100	94.241	Sorex_araneus
ENSCAFG00000017452	PABPC5	100	97.382	ENSSSCG00000040194	PABPC5	100	97.382	Sus_scrofa
ENSCAFG00000017452	PABPC5	100	97.382	ENSTBEG00000016482	PABPC5	100	97.382	Tupaia_belangeri
ENSCAFG00000017452	PABPC5	100	98.953	ENSUAMG00000013627	PABPC5	100	98.953	Ursus_americanus
ENSCAFG00000017452	PABPC5	100	98.691	ENSUMAG00000023934	PABPC5	100	98.691	Ursus_maritimus
ENSCAFG00000017452	PABPC5	100	97.120	ENSVPAG00000001063	PABPC5	100	97.120	Vicugna_pacos
ENSCAFG00000017452	PABPC5	100	99.738	ENSVVUG00000013172	PABPC5	100	99.738	Vulpes_vulpes