EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00000018673 (Gene tree)
Gene ID: 481046
Gene Symbol: SMARCA1
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Canis_familiaris
Status: putative
Strand: Minus strand
Length: 71178 bases
Position: chrX:100677888-100749065
Accession: 46528
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00000027555	ResIII	PF04851.15	1.2e-12	1	1
ENSCAFP00000038690	ResIII	PF04851.15	2.2e-10	1	1
ENSCAFP00000027555	DEAD	PF00270.29	1.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00000048721	-	3784	-	ENSCAFP00000038690	850 (aa)	-	J9NZH0
ENSCAFT00000029649	-	4459	XM_005642121	ENSCAFP00000027555	1075 (aa)	-	F6XTU7

Gene Model

Click here to download ENSCAFG00000018673's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000018673's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00000018673	SMARCA1	99	76.914	ENSCAFG00000007525	SMARCA5	93	75.976
ENSCAFG00000018673	SMARCA1	63	35.120	ENSCAFG00000010944	CHD1L	61	33.504
ENSCAFG00000018673	SMARCA1	50	30.498	ENSCAFG00000009179	RAD54B	51	30.290
ENSCAFG00000018673	SMARCA1	54	41.004	ENSCAFG00000008090	HELLS	63	42.708
ENSCAFG00000018673	SMARCA1	50	34.082	ENSCAFG00000010026	SMARCAD1	50	33.774

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00000018673	SMARCA1	99	88.824	ENSG00000102038	SMARCA1	100	88.941	Homo_sapiens
ENSCAFG00000018673	SMARCA1	99	75.410	ENSAPOG00000016035	smarca5	98	74.006	Acanthochromis_polyacanthus
ENSCAFG00000018673	SMARCA1	100	89.312	ENSAMEG00000015218	SMARCA1	100	89.312	Ailuropoda_melanoleuca
ENSCAFG00000018673	SMARCA1	99	75.059	ENSACIG00000016982	smarca5	99	73.932	Amphilophus_citrinellus
ENSCAFG00000018673	SMARCA1	99	75.410	ENSAOCG00000015578	smarca5	95	73.386	Amphiprion_ocellaris
ENSCAFG00000018673	SMARCA1	99	75.410	ENSAPEG00000011117	smarca5	99	75.410	Amphiprion_percula
ENSCAFG00000018673	SMARCA1	99	75.293	ENSATEG00000012894	smarca5	95	73.486	Anabas_testudineus
ENSCAFG00000018673	SMARCA1	99	83.647	ENSAPLG00000013149	SMARCA1	100	82.983	Anas_platyrhynchos
ENSCAFG00000018673	SMARCA1	99	82.353	ENSACAG00000011376	SMARCA1	95	81.299	Anolis_carolinensis
ENSCAFG00000018673	SMARCA1	98	84.848	ENSANAG00000023098	SMARCA1	100	84.851	Aotus_nancymaae
ENSCAFG00000018673	SMARCA1	99	75.176	ENSACLG00000025356	smarca5	95	73.784	Astatotilapia_calliptera
ENSCAFG00000018673	SMARCA1	99	79.929	ENSAMXG00000011227	smarca1	99	80.482	Astyanax_mexicanus
ENSCAFG00000018673	SMARCA1	99	75.650	ENSAMXG00000005709	smarca5	94	74.597	Astyanax_mexicanus
ENSCAFG00000018673	SMARCA1	99	88.325	ENSBTAG00000002292	SMARCA1	99	87.595	Bos_taurus
ENSCAFG00000018673	SMARCA1	99	58.440	WBGene00002169	isw-1	97	55.611	Caenorhabditis_elegans
ENSCAFG00000018673	SMARCA1	99	88.706	ENSCJAG00000002868	SMARCA1	100	88.755	Callithrix_jacchus
ENSCAFG00000018673	SMARCA1	100	89.767	ENSCAFG00020001751	SMARCA1	100	89.767	Canis_lupus_dingo
ENSCAFG00000018673	SMARCA1	99	88.588	ENSCHIG00000009837	SMARCA1	100	87.570	Capra_hircus
ENSCAFG00000018673	SMARCA1	99	88.588	ENSTSYG00000004240	SMARCA1	98	87.262	Carlito_syrichta
ENSCAFG00000018673	SMARCA1	99	87.882	ENSCPOG00000013601	SMARCA1	95	86.497	Cavia_porcellus
ENSCAFG00000018673	SMARCA1	99	85.294	ENSCCAG00000030817	SMARCA1	100	85.332	Cebus_capucinus
ENSCAFG00000018673	SMARCA1	98	89.015	ENSCATG00000015921	SMARCA1	100	88.941	Cercocebus_atys
ENSCAFG00000018673	SMARCA1	99	87.412	ENSCLAG00000002171	SMARCA1	100	86.419	Chinchilla_lanigera
ENSCAFG00000018673	SMARCA1	99	88.824	ENSCSAG00000008460	SMARCA1	100	88.558	Chlorocebus_sabaeus
ENSCAFG00000018673	SMARCA1	99	83.765	ENSCPBG00000001146	SMARCA1	91	93.084	Chrysemys_picta_bellii
ENSCAFG00000018673	SMARCA1	99	66.313	ENSCING00000004110	swi/snf	98	64.618	Ciona_intestinalis
ENSCAFG00000018673	SMARCA1	99	66.354	ENSCSAVG00000004620	-	100	65.027	Ciona_savignyi
ENSCAFG00000018673	SMARCA1	99	88.824	ENSCANG00000007183	SMARCA1	100	88.848	Colobus_angolensis_palliatus
ENSCAFG00000018673	SMARCA1	99	86.941	ENSCGRG00001010776	Smarca1	100	85.316	Cricetulus_griseus_chok1gshd
ENSCAFG00000018673	SMARCA1	97	86.336	ENSCGRG00000015301	Smarca1	98	86.016	Cricetulus_griseus_crigri
ENSCAFG00000018673	SMARCA1	99	75.176	ENSCSEG00000000328	smarca5	95	73.784	Cynoglossus_semilaevis
ENSCAFG00000018673	SMARCA1	99	75.059	ENSCVAG00000008668	smarca5	99	75.059	Cyprinodon_variegatus
ENSCAFG00000018673	SMARCA1	99	77.535	ENSDARG00000012776	smarca1	97	75.996	Danio_rerio
ENSCAFG00000018673	SMARCA1	99	74.912	ENSDARG00000052348	smarca5	95	73.062	Danio_rerio
ENSCAFG00000018673	SMARCA1	98	86.122	ENSDNOG00000004315	SMARCA1	99	86.122	Dasypus_novemcinctus
ENSCAFG00000018673	SMARCA1	97	86.941	ENSDORG00000009270	Smarca1	99	85.551	Dipodomys_ordii
ENSCAFG00000018673	SMARCA1	95	68.221	FBgn0011604	Iswi	98	64.341	Drosophila_melanogaster
ENSCAFG00000018673	SMARCA1	89	92.857	ENSETEG00000017426	SMARCA1	85	92.857	Echinops_telfairi
ENSCAFG00000018673	SMARCA1	99	72.824	ENSEBUG00000001239	smarca5	96	71.888	Eptatretus_burgeri
ENSCAFG00000018673	SMARCA1	99	83.547	ENSEASG00005008218	SMARCA1	100	83.019	Equus_asinus_asinus
ENSCAFG00000018673	SMARCA1	99	88.941	ENSECAG00000012106	SMARCA1	96	96.757	Equus_caballus
ENSCAFG00000018673	SMARCA1	79	99.441	ENSEEUG00000014927	SMARCA1	83	98.013	Erinaceus_europaeus
ENSCAFG00000018673	SMARCA1	99	79.157	ENSELUG00000010515	smarca1	98	77.255	Esox_lucius
ENSCAFG00000018673	SMARCA1	100	89.498	ENSFCAG00000018496	SMARCA1	100	89.312	Felis_catus
ENSCAFG00000018673	SMARCA1	93	83.059	ENSFALG00000000209	SMARCA1	98	82.347	Ficedula_albicollis
ENSCAFG00000018673	SMARCA1	97	86.532	ENSFDAG00000009818	SMARCA1	97	87.425	Fukomys_damarensis
ENSCAFG00000018673	SMARCA1	99	75.176	ENSFHEG00000007687	smarca5	94	73.684	Fundulus_heteroclitus
ENSCAFG00000018673	SMARCA1	95	83.951	ENSGALG00000008431	SMARCA1	96	82.644	Gallus_gallus
ENSCAFG00000018673	SMARCA1	99	75.410	ENSGAFG00000017731	smarca5	95	73.684	Gambusia_affinis
ENSCAFG00000018673	SMARCA1	99	83.765	ENSGAGG00000023575	SMARCA1	100	83.215	Gopherus_agassizii
ENSCAFG00000018673	SMARCA1	70	96.000	ENSGGOG00000012841	-	95	96.000	Gorilla_gorilla
ENSCAFG00000018673	SMARCA1	100	86.698	ENSHGLG00000003080	SMARCA1	100	86.698	Heterocephalus_glaber_female
ENSCAFG00000018673	SMARCA1	99	86.941	ENSHGLG00100001102	SMARCA1	95	95.440	Heterocephalus_glaber_male
ENSCAFG00000018673	SMARCA1	99	75.176	ENSHCOG00000005458	smarca5	95	73.486	Hippocampus_comes
ENSCAFG00000018673	SMARCA1	99	78.867	ENSIPUG00000016905	Smarca1	99	77.510	Ictalurus_punctatus
ENSCAFG00000018673	SMARCA1	99	74.441	ENSIPUG00000005229	SMARCA5	97	73.280	Ictalurus_punctatus
ENSCAFG00000018673	SMARCA1	100	87.814	ENSSTOG00000014524	SMARCA1	100	87.814	Ictidomys_tridecemlineatus
ENSCAFG00000018673	SMARCA1	99	87.662	ENSJJAG00000002593	Smarca1	100	86.111	Jaculus_jaculus
ENSCAFG00000018673	SMARCA1	99	75.527	ENSKMAG00000003777	smarca5	95	73.784	Kryptolebias_marmoratus
ENSCAFG00000018673	SMARCA1	99	74.824	ENSLBEG00000018112	smarca5	95	73.684	Labrus_bergylta
ENSCAFG00000018673	SMARCA1	93	75.910	ENSLBEG00000013295	SMARCA1	100	75.536	Labrus_bergylta
ENSCAFG00000018673	SMARCA1	99	81.294	ENSLACG00000016697	SMARCA1	98	80.217	Latimeria_chalumnae
ENSCAFG00000018673	SMARCA1	99	80.118	ENSLOCG00000014591	smarca1	97	78.875	Lepisosteus_oculatus
ENSCAFG00000018673	SMARCA1	99	87.647	ENSLAFG00000000896	SMARCA1	99	86.399	Loxodonta_africana
ENSCAFG00000018673	SMARCA1	99	88.824	ENSMFAG00000002117	SMARCA1	100	88.941	Macaca_fascicularis
ENSCAFG00000018673	SMARCA1	98	89.015	ENSMMUG00000008818	SMARCA1	100	88.941	Macaca_mulatta
ENSCAFG00000018673	SMARCA1	98	89.015	ENSMNEG00000041768	SMARCA1	100	88.941	Macaca_nemestrina
ENSCAFG00000018673	SMARCA1	99	88.706	ENSMLEG00000043198	SMARCA1	100	88.848	Mandrillus_leucophaeus
ENSCAFG00000018673	SMARCA1	99	75.761	ENSMAMG00000014294	smarca5	96	73.425	Mastacembelus_armatus
ENSCAFG00000018673	SMARCA1	99	75.176	ENSMZEG00005009369	smarca5	95	73.784	Maylandia_zebra
ENSCAFG00000018673	SMARCA1	99	82.251	ENSMGAG00000007042	SMARCA1	99	82.399	Meleagris_gallopavo
ENSCAFG00000018673	SMARCA1	98	86.705	ENSMAUG00000008133	Smarca1	99	86.705	Mesocricetus_auratus
ENSCAFG00000018673	SMARCA1	99	88.706	ENSMICG00000015768	SMARCA1	100	88.011	Microcebus_murinus
ENSCAFG00000018673	SMARCA1	99	87.662	ENSMOCG00000009464	Smarca1	100	86.204	Microtus_ochrogaster
ENSCAFG00000018673	SMARCA1	99	73.536	ENSMMOG00000005547	smarca5	99	71.897	Mola_mola
ENSCAFG00000018673	SMARCA1	99	83.294	ENSMODG00000013187	-	99	80.000	Monodelphis_domestica
ENSCAFG00000018673	SMARCA1	99	75.410	ENSMALG00000002081	smarca5	97	73.610	Monopterus_albus
ENSCAFG00000018673	SMARCA1	99	87.779	MGP_CAROLIEiJ_G0033034	Smarca1	96	93.716	Mus_caroli
ENSCAFG00000018673	SMARCA1	99	87.779	ENSMUSG00000031099	Smarca1	96	93.716	Mus_musculus
ENSCAFG00000018673	SMARCA1	99	87.662	MGP_PahariEiJ_G0031579	Smarca1	96	93.716	Mus_pahari
ENSCAFG00000018673	SMARCA1	99	87.779	MGP_SPRETEiJ_G0034192	Smarca1	96	93.989	Mus_spretus
ENSCAFG00000018673	SMARCA1	100	89.684	ENSMPUG00000017423	SMARCA1	95	89.684	Mustela_putorius_furo
ENSCAFG00000018673	SMARCA1	99	86.111	ENSMLUG00000029614	SMARCA1	100	85.807	Myotis_lucifugus
ENSCAFG00000018673	SMARCA1	98	87.369	ENSNGAG00000006492	Smarca1	99	87.369	Nannospalax_galili
ENSCAFG00000018673	SMARCA1	99	75.294	ENSNBRG00000004463	smarca5	99	73.883	Neolamprologus_brichardi
ENSCAFG00000018673	SMARCA1	98	88.352	ENSNLEG00000015179	SMARCA1	100	88.290	Nomascus_leucogenys
ENSCAFG00000018673	SMARCA1	93	71.322	ENSMEUG00000008819	SMARCA1	99	72.623	Notamacropus_eugenii
ENSCAFG00000018673	SMARCA1	97	85.936	ENSODEG00000012163	SMARCA1	99	86.325	Octodon_degus
ENSCAFG00000018673	SMARCA1	99	75.294	ENSONIG00000009993	smarca5	95	73.883	Oreochromis_niloticus
ENSCAFG00000018673	SMARCA1	99	83.882	ENSOANG00000002862	SMARCA1	100	83.418	Ornithorhynchus_anatinus
ENSCAFG00000018673	SMARCA1	99	87.647	ENSOCUG00000001047	SMARCA1	100	85.209	Oryctolagus_cuniculus
ENSCAFG00000018673	SMARCA1	99	75.293	ENSORLG00000021998	smarca5	95	73.486	Oryzias_latipes
ENSCAFG00000018673	SMARCA1	99	75.410	ENSORLG00020017679	smarca5	95	73.585	Oryzias_latipes_hni
ENSCAFG00000018673	SMARCA1	99	75.293	ENSORLG00015017210	smarca5	95	73.386	Oryzias_latipes_hsok
ENSCAFG00000018673	SMARCA1	99	75.176	ENSOMEG00000000086	smarca5	95	73.386	Oryzias_melastigma
ENSCAFG00000018673	SMARCA1	98	88.224	ENSOGAG00000004399	SMARCA1	99	88.224	Otolemur_garnettii
ENSCAFG00000018673	SMARCA1	99	88.588	ENSOARG00000014638	SMARCA1	100	88.265	Ovis_aries
ENSCAFG00000018673	SMARCA1	99	88.824	ENSPPAG00000034647	SMARCA1	100	88.941	Pan_paniscus
ENSCAFG00000018673	SMARCA1	100	89.684	ENSPPRG00000008929	SMARCA1	100	89.498	Panthera_pardus
ENSCAFG00000018673	SMARCA1	99	87.082	ENSPTIG00000000915	SMARCA1	98	88.258	Panthera_tigris_altaica
ENSCAFG00000018673	SMARCA1	99	88.824	ENSPTRG00000049876	SMARCA1	100	88.941	Pan_troglodytes
ENSCAFG00000018673	SMARCA1	99	88.824	ENSPANG00000003871	SMARCA1	100	88.941	Papio_anubis
ENSCAFG00000018673	SMARCA1	95	78.792	ENSPKIG00000013411	smarca1	98	76.860	Paramormyrops_kingsleyae
ENSCAFG00000018673	SMARCA1	99	83.529	ENSPSIG00000010101	SMARCA1	100	82.912	Pelodiscus_sinensis
ENSCAFG00000018673	SMARCA1	98	87.464	ENSPEMG00000017503	Smarca1	99	87.464	Peromyscus_maniculatus_bairdii
ENSCAFG00000018673	SMARCA1	99	83.765	ENSPCIG00000015460	SMARCA1	98	82.283	Phascolarctos_cinereus
ENSCAFG00000018673	SMARCA1	99	75.410	ENSPFOG00000007649	smarca5	95	73.684	Poecilia_formosa
ENSCAFG00000018673	SMARCA1	99	75.410	ENSPLAG00000003363	smarca5	95	73.684	Poecilia_latipinna
ENSCAFG00000018673	SMARCA1	99	75.410	ENSPMEG00000019849	smarca5	95	73.585	Poecilia_mexicana
ENSCAFG00000018673	SMARCA1	99	75.410	ENSPREG00000023250	smarca5	95	73.585	Poecilia_reticulata
ENSCAFG00000018673	SMARCA1	99	85.412	ENSPPYG00000020703	SMARCA1	100	85.953	Pongo_abelii
ENSCAFG00000018673	SMARCA1	81	89.189	ENSPCOG00000020722	SMARCA1	81	98.925	Propithecus_coquereli
ENSCAFG00000018673	SMARCA1	90	93.684	ENSPVAG00000003805	SMARCA1	94	91.905	Pteropus_vampyrus
ENSCAFG00000018673	SMARCA1	53	86.697	ENSPNYG00000012299	smarca5	91	82.320	Pundamilia_nyererei
ENSCAFG00000018673	SMARCA1	100	86.884	ENSRNOG00000003762	Smarca1	100	86.698	Rattus_norvegicus
ENSCAFG00000018673	SMARCA1	99	88.824	ENSRROG00000034167	SMARCA1	100	88.848	Rhinopithecus_roxellana
ENSCAFG00000018673	SMARCA1	99	88.824	ENSSBOG00000020641	SMARCA1	100	88.265	Saimiri_boliviensis_boliviensis
ENSCAFG00000018673	SMARCA1	99	78.026	ENSSHAG00000013518	SMARCA1	99	76.791	Sarcophilus_harrisii
ENSCAFG00000018673	SMARCA1	99	75.708	ENSSFOG00015016794	smarca5	100	74.367	Scleropages_formosus
ENSCAFG00000018673	SMARCA1	99	79.601	ENSSFOG00015009043	smarca1	98	77.931	Scleropages_formosus
ENSCAFG00000018673	SMARCA1	99	74.824	ENSSMAG00000004801	smarca5	95	73.307	Scophthalmus_maximus
ENSCAFG00000018673	SMARCA1	99	75.176	ENSSDUG00000020690	smarca5	96	73.684	Seriola_dumerili
ENSCAFG00000018673	SMARCA1	99	75.176	ENSSLDG00000025190	smarca5	96	73.684	Seriola_lalandi_dorsalis
ENSCAFG00000018673	SMARCA1	87	97.209	ENSSARG00000000842	SMARCA1	88	87.867	Sorex_araneus
ENSCAFG00000018673	SMARCA1	97	83.051	ENSSPUG00000000590	SMARCA1	94	81.855	Sphenodon_punctatus
ENSCAFG00000018673	SMARCA1	99	75.410	ENSSPAG00000002894	smarca5	97	74.006	Stegastes_partitus
ENSCAFG00000018673	SMARCA1	99	88.706	ENSSSCG00000012649	SMARCA1	99	87.678	Sus_scrofa
ENSCAFG00000018673	SMARCA1	99	83.176	ENSTGUG00000003899	-	100	82.482	Taeniopygia_guttata
ENSCAFG00000018673	SMARCA1	99	74.706	ENSTRUG00000014094	smarca5	95	73.188	Takifugu_rubripes
ENSCAFG00000018673	SMARCA1	99	74.941	ENSTNIG00000017717	smarca5	94	72.095	Tetraodon_nigroviridis
ENSCAFG00000018673	SMARCA1	95	86.424	ENSTBEG00000014973	SMARCA1	99	80.684	Tupaia_belangeri
ENSCAFG00000018673	SMARCA1	97	84.267	ENSTTRG00000006168	SMARCA1	99	85.642	Tursiops_truncatus
ENSCAFG00000018673	SMARCA1	100	89.209	ENSUAMG00000020201	SMARCA1	100	89.209	Ursus_americanus
ENSCAFG00000018673	SMARCA1	99	83.765	ENSUMAG00000004073	SMARCA1	96	88.998	Ursus_maritimus
ENSCAFG00000018673	SMARCA1	73	99.675	ENSVPAG00000010492	-	78	99.675	Vicugna_pacos
ENSCAFG00000018673	SMARCA1	99	89.176	ENSVVUG00000008878	SMARCA1	99	89.075	Vulpes_vulpes
ENSCAFG00000018673	SMARCA1	99	80.235	ENSXETG00000001526	smarca1	99	79.822	Xenopus_tropicalis
ENSCAFG00000018673	SMARCA1	99	75.293	ENSXCOG00000011170	smarca5	98	73.585	Xiphophorus_couchianus
ENSCAFG00000018673	SMARCA1	99	75.293	ENSXMAG00000009678	smarca5	97	74.919	Xiphophorus_maculatus