EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00000019409 (Gene tree)
Gene ID: 612170
Gene Symbol: LSM7
Alias: -
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Canis_familiaris
Status: putative
Strand: Plus strand
Length: 4405 bases
Position: chr20:56730569-56734973
Accession: 42846
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00000028692	LSM	PF01423.22	2.5e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00000030858	-	312	XM_849902	ENSCAFP00000028692	103 (aa)	-	F1Q1B1

Gene Model

Click here to download ENSCAFG00000019409's gene model file

Pathways

Pathway ID	Pathway Name	Source
cfa03018	RNA degradation	KEGG
cfa03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000019409's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00000019409	LSM7	72	35.526	ENSCAFG00000016459	LSM8	71	35.526
ENSCAFG00000019409	LSM7	69	38.028	ENSCAFG00000032595	SNRPG	83	38.028

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00000019409	LSM7	98	99.010	ENSG00000130332	LSM7	100	100.000	Homo_sapiens
ENSCAFG00000019409	LSM7	92	93.684	ENSAPOG00000015573	lsm7	82	93.684	Acanthochromis_polyacanthus
ENSCAFG00000019409	LSM7	99	100.000	ENSAMEG00000005484	LSM7	99	100.000	Ailuropoda_melanoleuca
ENSCAFG00000019409	LSM7	94	93.814	ENSACIG00000006498	lsm7	77	93.814	Amphilophus_citrinellus
ENSCAFG00000019409	LSM7	100	93.204	ENSAOCG00000001077	lsm7	94	93.204	Amphiprion_ocellaris
ENSCAFG00000019409	LSM7	100	93.204	ENSAPEG00000024447	lsm7	94	93.204	Amphiprion_percula
ENSCAFG00000019409	LSM7	98	94.059	ENSAPEG00000000694	lsm7	98	94.059	Amphiprion_percula
ENSCAFG00000019409	LSM7	98	94.059	ENSATEG00000008557	lsm7	98	94.059	Anabas_testudineus
ENSCAFG00000019409	LSM7	98	99.010	ENSANAG00000037196	-	98	99.010	Aotus_nancymaae
ENSCAFG00000019409	LSM7	98	91.089	ENSANAG00000022222	-	98	91.089	Aotus_nancymaae
ENSCAFG00000019409	LSM7	98	93.069	ENSACLG00000021021	lsm7	98	93.069	Astatotilapia_calliptera
ENSCAFG00000019409	LSM7	98	94.059	ENSAMXG00000037622	lsm7	98	94.059	Astyanax_mexicanus
ENSCAFG00000019409	LSM7	98	99.010	ENSBTAG00000004521	LSM7	98	99.010	Bos_taurus
ENSCAFG00000019409	LSM7	98	56.436	WBGene00003081	lsm-7	97	56.436	Caenorhabditis_elegans
ENSCAFG00000019409	LSM7	52	98.148	ENSCJAG00000039713	-	66	98.148	Callithrix_jacchus
ENSCAFG00000019409	LSM7	100	100.000	ENSCAFG00020018168	LSM7	75	99.020	Canis_lupus_dingo
ENSCAFG00000019409	LSM7	99	99.020	ENSCHIG00000023663	LSM7	99	99.020	Capra_hircus
ENSCAFG00000019409	LSM7	69	98.592	ENSCAPG00000014534	LSM7	100	98.592	Cavia_aperea
ENSCAFG00000019409	LSM7	98	99.010	ENSCPOG00000014025	LSM7	100	99.010	Cavia_porcellus
ENSCAFG00000019409	LSM7	98	99.010	ENSCCAG00000035456	LSM7	99	99.010	Cebus_capucinus
ENSCAFG00000019409	LSM7	98	99.010	ENSCATG00000023543	LSM7	98	99.010	Cercocebus_atys
ENSCAFG00000019409	LSM7	98	99.010	ENSCLAG00000011635	LSM7	98	99.010	Chinchilla_lanigera
ENSCAFG00000019409	LSM7	98	99.010	ENSCSAG00000011599	LSM7	98	99.010	Chlorocebus_sabaeus
ENSCAFG00000019409	LSM7	70	93.056	ENSCPBG00000021317	LSM7	77	93.056	Chrysemys_picta_bellii
ENSCAFG00000019409	LSM7	93	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSCAFG00000019409	LSM7	98	99.010	ENSCANG00000035525	LSM7	98	99.010	Colobus_angolensis_palliatus
ENSCAFG00000019409	LSM7	98	98.020	ENSCGRG00001000807	-	98	98.020	Cricetulus_griseus_chok1gshd
ENSCAFG00000019409	LSM7	87	87.778	ENSCGRG00001016005	-	92	87.778	Cricetulus_griseus_chok1gshd
ENSCAFG00000019409	LSM7	99	98.039	ENSCGRG00000014355	-	98	98.039	Cricetulus_griseus_crigri
ENSCAFG00000019409	LSM7	87	87.778	ENSCGRG00000006821	-	92	87.778	Cricetulus_griseus_crigri
ENSCAFG00000019409	LSM7	99	93.137	ENSCSEG00000014900	lsm7	86	94.059	Cynoglossus_semilaevis
ENSCAFG00000019409	LSM7	99	94.118	ENSCVAG00000021091	lsm7	94	94.118	Cyprinodon_variegatus
ENSCAFG00000019409	LSM7	98	94.059	ENSDARG00000058328	lsm7	98	94.059	Danio_rerio
ENSCAFG00000019409	LSM7	98	99.010	ENSDORG00000024460	Lsm7	99	99.010	Dipodomys_ordii
ENSCAFG00000019409	LSM7	94	77.551	FBgn0261068	LSm7	89	77.551	Drosophila_melanogaster
ENSCAFG00000019409	LSM7	99	96.078	ENSETEG00000012788	LSM7	100	96.078	Echinops_telfairi
ENSCAFG00000019409	LSM7	81	57.831	ENSEBUG00000010470	-	79	57.831	Eptatretus_burgeri
ENSCAFG00000019409	LSM7	99	84.314	ENSEBUG00000016992	lsm7	98	84.314	Eptatretus_burgeri
ENSCAFG00000019409	LSM7	98	95.050	ENSECAG00000001440	LSM7	65	95.050	Equus_caballus
ENSCAFG00000019409	LSM7	98	100.000	ENSFCAG00000003445	LSM7	98	100.000	Felis_catus
ENSCAFG00000019409	LSM7	98	96.040	ENSFALG00000011912	LSM7	100	96.040	Ficedula_albicollis
ENSCAFG00000019409	LSM7	93	98.958	ENSFDAG00000007661	LSM7	100	98.958	Fukomys_damarensis
ENSCAFG00000019409	LSM7	89	94.565	ENSFHEG00000006349	lsm7	90	95.050	Fundulus_heteroclitus
ENSCAFG00000019409	LSM7	99	92.157	ENSGMOG00000013320	lsm7	99	92.157	Gadus_morhua
ENSCAFG00000019409	LSM7	98	95.050	ENSGAFG00000013902	lsm7	98	95.050	Gambusia_affinis
ENSCAFG00000019409	LSM7	99	93.137	ENSGACG00000010390	lsm7	99	93.137	Gasterosteus_aculeatus
ENSCAFG00000019409	LSM7	98	99.010	ENSGGOG00000010172	LSM7	98	99.010	Gorilla_gorilla
ENSCAFG00000019409	LSM7	99	93.137	ENSHBUG00000004616	lsm7	98	93.069	Haplochromis_burtoni
ENSCAFG00000019409	LSM7	98	99.010	ENSHGLG00000010587	LSM7	98	99.010	Heterocephalus_glaber_female
ENSCAFG00000019409	LSM7	98	99.010	ENSHGLG00100000852	LSM7	98	99.010	Heterocephalus_glaber_male
ENSCAFG00000019409	LSM7	98	93.069	ENSHCOG00000020252	lsm7	100	93.069	Hippocampus_comes
ENSCAFG00000019409	LSM7	98	94.059	ENSIPUG00000024724	lsm7	98	94.059	Ictalurus_punctatus
ENSCAFG00000019409	LSM7	100	99.029	ENSSTOG00000028372	LSM7	99	99.010	Ictidomys_tridecemlineatus
ENSCAFG00000019409	LSM7	98	97.030	ENSJJAG00000001936	Lsm7	98	97.030	Jaculus_jaculus
ENSCAFG00000019409	LSM7	98	95.050	ENSKMAG00000022151	lsm7	98	95.050	Kryptolebias_marmoratus
ENSCAFG00000019409	LSM7	98	94.059	ENSLBEG00000005203	lsm7	98	94.059	Labrus_bergylta
ENSCAFG00000019409	LSM7	99	97.059	ENSLACG00000015700	LSM7	99	97.059	Latimeria_chalumnae
ENSCAFG00000019409	LSM7	99	97.059	ENSLOCG00000004356	lsm7	99	97.059	Lepisosteus_oculatus
ENSCAFG00000019409	LSM7	99	99.020	ENSLAFG00000029302	LSM7	99	99.020	Loxodonta_africana
ENSCAFG00000019409	LSM7	98	99.010	ENSMFAG00000044572	LSM7	98	99.010	Macaca_fascicularis
ENSCAFG00000019409	LSM7	98	99.010	ENSMMUG00000000452	LSM7	99	99.010	Macaca_mulatta
ENSCAFG00000019409	LSM7	98	99.010	ENSMNEG00000004393	LSM7	98	99.010	Macaca_nemestrina
ENSCAFG00000019409	LSM7	98	99.010	ENSMLEG00000030852	LSM7	100	99.010	Mandrillus_leucophaeus
ENSCAFG00000019409	LSM7	98	93.069	ENSMAMG00000005410	lsm7	98	93.069	Mastacembelus_armatus
ENSCAFG00000019409	LSM7	98	93.069	ENSMZEG00005028055	lsm7	98	93.069	Maylandia_zebra
ENSCAFG00000019409	LSM7	98	97.030	ENSMGAG00000000750	LSM7	87	97.030	Meleagris_gallopavo
ENSCAFG00000019409	LSM7	99	98.039	ENSMAUG00000009276	Lsm7	99	98.039	Mesocricetus_auratus
ENSCAFG00000019409	LSM7	98	99.010	ENSMICG00000009988	-	98	99.010	Microcebus_murinus
ENSCAFG00000019409	LSM7	98	99.010	ENSMICG00000028619	-	98	99.010	Microcebus_murinus
ENSCAFG00000019409	LSM7	98	98.020	ENSMOCG00000016925	Lsm7	98	98.020	Microtus_ochrogaster
ENSCAFG00000019409	LSM7	98	94.059	ENSMMOG00000019645	lsm7	96	94.059	Mola_mola
ENSCAFG00000019409	LSM7	98	98.020	ENSMODG00000004722	LSM7	98	98.020	Monodelphis_domestica
ENSCAFG00000019409	LSM7	98	93.069	ENSMALG00000014511	lsm7	78	93.069	Monopterus_albus
ENSCAFG00000019409	LSM7	98	97.030	MGP_CAROLIEiJ_G0015607	Lsm7	98	97.030	Mus_caroli
ENSCAFG00000019409	LSM7	98	97.030	ENSMUSG00000035215	Lsm7	98	97.030	Mus_musculus
ENSCAFG00000019409	LSM7	98	97.030	MGP_PahariEiJ_G0031020	Lsm7	98	97.030	Mus_pahari
ENSCAFG00000019409	LSM7	98	97.030	MGP_SPRETEiJ_G0016425	Lsm7	98	97.030	Mus_spretus
ENSCAFG00000019409	LSM7	98	91.089	ENSMLUG00000024002	-	93	91.089	Myotis_lucifugus
ENSCAFG00000019409	LSM7	99	98.039	ENSMLUG00000013097	-	99	98.039	Myotis_lucifugus
ENSCAFG00000019409	LSM7	98	97.030	ENSNGAG00000021637	Lsm7	98	97.030	Nannospalax_galili
ENSCAFG00000019409	LSM7	91	93.617	ENSNBRG00000001237	-	81	93.069	Neolamprologus_brichardi
ENSCAFG00000019409	LSM7	99	93.137	ENSNBRG00000015770	lsm7	88	93.137	Neolamprologus_brichardi
ENSCAFG00000019409	LSM7	98	99.010	ENSNLEG00000002265	LSM7	98	99.010	Nomascus_leucogenys
ENSCAFG00000019409	LSM7	98	78.218	ENSODEG00000008190	-	98	78.218	Octodon_degus
ENSCAFG00000019409	LSM7	98	99.010	ENSODEG00000013590	-	98	99.010	Octodon_degus
ENSCAFG00000019409	LSM7	98	92.079	ENSODEG00000018769	-	98	92.079	Octodon_degus
ENSCAFG00000019409	LSM7	98	93.069	ENSONIG00000001801	lsm7	87	93.069	Oreochromis_niloticus
ENSCAFG00000019409	LSM7	99	94.118	ENSORLG00000023951	lsm7	98	94.059	Oryzias_latipes
ENSCAFG00000019409	LSM7	99	94.118	ENSORLG00020022226	lsm7	98	94.059	Oryzias_latipes_hni
ENSCAFG00000019409	LSM7	99	94.118	ENSORLG00015020044	lsm7	94	93.137	Oryzias_latipes_hsok
ENSCAFG00000019409	LSM7	99	93.137	ENSOMEG00000012806	lsm7	98	94.059	Oryzias_melastigma
ENSCAFG00000019409	LSM7	99	97.059	ENSOGAG00000000144	-	100	97.059	Otolemur_garnettii
ENSCAFG00000019409	LSM7	98	87.129	ENSOGAG00000024373	-	98	87.129	Otolemur_garnettii
ENSCAFG00000019409	LSM7	99	99.020	ENSOARG00000014013	LSM7	99	99.020	Ovis_aries
ENSCAFG00000019409	LSM7	98	99.010	ENSPPAG00000026500	LSM7	98	99.010	Pan_paniscus
ENSCAFG00000019409	LSM7	98	100.000	ENSPPRG00000008624	LSM7	98	100.000	Panthera_pardus
ENSCAFG00000019409	LSM7	98	100.000	ENSPTIG00000016252	LSM7	98	100.000	Panthera_tigris_altaica
ENSCAFG00000019409	LSM7	98	99.010	ENSPTRG00000010233	LSM7	98	99.010	Pan_troglodytes
ENSCAFG00000019409	LSM7	98	99.010	ENSPANG00000020668	LSM7	98	99.010	Papio_anubis
ENSCAFG00000019409	LSM7	98	96.040	ENSPKIG00000011325	lsm7	98	96.040	Paramormyrops_kingsleyae
ENSCAFG00000019409	LSM7	98	97.030	ENSPSIG00000017149	LSM7	89	97.030	Pelodiscus_sinensis
ENSCAFG00000019409	LSM7	98	94.059	ENSPMGG00000006498	lsm7	98	94.059	Periophthalmus_magnuspinnatus
ENSCAFG00000019409	LSM7	98	98.020	ENSPCIG00000030454	LSM7	99	98.020	Phascolarctos_cinereus
ENSCAFG00000019409	LSM7	99	94.118	ENSPFOG00000012467	lsm7	90	94.118	Poecilia_formosa
ENSCAFG00000019409	LSM7	99	94.118	ENSPLAG00000000252	lsm7	94	94.059	Poecilia_latipinna
ENSCAFG00000019409	LSM7	99	94.118	ENSPMEG00000000587	lsm7	94	94.059	Poecilia_mexicana
ENSCAFG00000019409	LSM7	78	72.840	ENSPREG00000016718	lsm7	63	74.684	Poecilia_reticulata
ENSCAFG00000019409	LSM7	71	95.890	ENSPPYG00000009348	-	50	95.890	Pongo_abelii
ENSCAFG00000019409	LSM7	98	99.010	ENSPCOG00000017177	LSM7	99	99.010	Propithecus_coquereli
ENSCAFG00000019409	LSM7	98	93.069	ENSPNYG00000006938	lsm7	98	93.069	Pundamilia_nyererei
ENSCAFG00000019409	LSM7	98	94.059	ENSPNAG00000010141	lsm7	99	94.059	Pygocentrus_nattereri
ENSCAFG00000019409	LSM7	98	97.030	ENSRNOG00000019552	Lsm7	98	97.030	Rattus_norvegicus
ENSCAFG00000019409	LSM7	98	99.010	ENSRBIG00000035978	LSM7	98	99.010	Rhinopithecus_bieti
ENSCAFG00000019409	LSM7	98	99.010	ENSRROG00000034044	LSM7	98	99.010	Rhinopithecus_roxellana
ENSCAFG00000019409	LSM7	90	48.000	YNL147W	-	87	48.000	Saccharomyces_cerevisiae
ENSCAFG00000019409	LSM7	98	99.010	ENSSBOG00000034899	LSM7	98	99.010	Saimiri_boliviensis_boliviensis
ENSCAFG00000019409	LSM7	98	94.059	ENSSFOG00015006728	lsm7	98	94.059	Scleropages_formosus
ENSCAFG00000019409	LSM7	99	94.118	ENSSMAG00000004195	lsm7	93	94.118	Scophthalmus_maximus
ENSCAFG00000019409	LSM7	98	94.059	ENSSDUG00000001863	lsm7	98	94.059	Seriola_dumerili
ENSCAFG00000019409	LSM7	98	94.059	ENSSLDG00000016339	lsm7	98	94.059	Seriola_lalandi_dorsalis
ENSCAFG00000019409	LSM7	98	94.059	ENSSPAG00000015221	lsm7	98	94.059	Stegastes_partitus
ENSCAFG00000019409	LSM7	98	99.010	ENSSSCG00000013463	LSM7	99	99.010	Sus_scrofa
ENSCAFG00000019409	LSM7	98	96.040	ENSTGUG00000000067	LSM7	100	96.040	Taeniopygia_guttata
ENSCAFG00000019409	LSM7	98	94.059	ENSTRUG00000022913	lsm7	98	94.059	Takifugu_rubripes
ENSCAFG00000019409	LSM7	98	94.059	ENSTNIG00000015525	lsm7	98	94.059	Tetraodon_nigroviridis
ENSCAFG00000019409	LSM7	68	87.143	ENSTBEG00000016602	LSM7	100	87.143	Tupaia_belangeri
ENSCAFG00000019409	LSM7	99	100.000	ENSUAMG00000000912	LSM7	85	100.000	Ursus_americanus
ENSCAFG00000019409	LSM7	99	99.020	ENSUMAG00000006556	LSM7	80	99.020	Ursus_maritimus
ENSCAFG00000019409	LSM7	69	100.000	ENSVVUG00000002640	LSM7	65	100.000	Vulpes_vulpes
ENSCAFG00000019409	LSM7	98	94.059	ENSXETG00000022166	lsm7	100	94.059	Xenopus_tropicalis
ENSCAFG00000019409	LSM7	98	95.050	ENSXCOG00000002572	lsm7	99	95.050	Xiphophorus_couchianus
ENSCAFG00000019409	LSM7	99	95.098	ENSXMAG00000018630	lsm7	98	95.050	Xiphophorus_maculatus