EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00000028988 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: U1 small nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Canis_familiaris
Status: putative
Strand: Plus strand
Length: 537 bases
Position: chr4:19139469-19140005
Accession: 102153257
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00000041040	zf-U1	PF06220.12	9.7e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00000043846	-	483	XM_005618930	ENSCAFP00000041040	160 (aa)	XP_005618988	J9P5W0

Gene Model

Click here to download ENSCAFG00000028988's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00000028988's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00000028988	-	100	70.186	ENSCAFG00000025525	-	100	70.807
ENSCAFG00000028988	-	100	85.000	ENSCAFG00000031775	-	100	84.375
ENSCAFG00000028988	-	74	98.305	ENSCAFG00000001231	-	93	98.305

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00000028988	-	100	97.500	ENSG00000124562	SNRPC	100	97.500	Homo_sapiens
ENSCAFG00000028988	-	100	95.625	ENSAMEG00000000963	SNRPC	88	95.625	Ailuropoda_melanoleuca
ENSCAFG00000028988	-	100	85.625	ENSACAG00000015721	SNRPC	87	86.076	Anolis_carolinensis
ENSCAFG00000028988	-	100	96.875	ENSANAG00000007843	-	100	96.875	Aotus_nancymaae
ENSCAFG00000028988	-	100	83.750	ENSANAG00000021026	-	100	75.625	Aotus_nancymaae
ENSCAFG00000028988	-	99	89.937	ENSANAG00000020588	-	92	82.390	Aotus_nancymaae
ENSCAFG00000028988	-	100	97.500	ENSANAG00000019696	-	100	97.500	Aotus_nancymaae
ENSCAFG00000028988	-	100	85.000	ENSANAG00000019157	-	100	84.375	Aotus_nancymaae
ENSCAFG00000028988	-	100	73.750	ENSANAG00000021444	-	61	81.250	Aotus_nancymaae
ENSCAFG00000028988	-	100	83.750	ENSANAG00000019726	-	92	84.375	Aotus_nancymaae
ENSCAFG00000028988	-	100	97.500	ENSBTAG00000024549	SNRPC	100	97.500	Bos_taurus
ENSCAFG00000028988	-	100	97.500	ENSCJAG00000015321	-	100	97.500	Callithrix_jacchus
ENSCAFG00000028988	-	100	86.875	ENSCJAG00000041822	-	100	86.250	Callithrix_jacchus
ENSCAFG00000028988	-	100	96.250	ENSCJAG00000043055	-	100	96.250	Callithrix_jacchus
ENSCAFG00000028988	-	100	97.500	ENSCAFG00020005945	-	100	97.500	Canis_lupus_dingo
ENSCAFG00000028988	-	99	77.215	ENSCAFG00020009944	-	90	77.848	Canis_lupus_dingo
ENSCAFG00000028988	-	100	86.875	ENSCAFG00020005758	-	99	87.342	Canis_lupus_dingo
ENSCAFG00000028988	-	100	85.000	ENSCAFG00020017383	-	100	84.375	Canis_lupus_dingo
ENSCAFG00000028988	-	100	88.764	ENSCAFG00020026577	-	100	88.764	Canis_lupus_dingo
ENSCAFG00000028988	-	100	96.875	ENSCHIG00000012087	-	100	96.875	Capra_hircus
ENSCAFG00000028988	-	97	83.871	ENSTSYG00000029745	-	50	92.000	Carlito_syrichta
ENSCAFG00000028988	-	100	97.500	ENSTSYG00000011216	-	100	97.500	Carlito_syrichta
ENSCAFG00000028988	-	100	67.500	ENSTSYG00000025721	-	100	64.375	Carlito_syrichta
ENSCAFG00000028988	-	89	97.203	ENSCAPG00000005161	SNRPC	100	97.203	Cavia_aperea
ENSCAFG00000028988	-	100	97.500	ENSCPOG00000008563	SNRPC	100	97.500	Cavia_porcellus
ENSCAFG00000028988	-	100	68.125	ENSCCAG00000028293	-	59	88.312	Cebus_capucinus
ENSCAFG00000028988	-	98	89.172	ENSCCAG00000022751	-	95	82.166	Cebus_capucinus
ENSCAFG00000028988	-	100	83.125	ENSCCAG00000036059	-	89	83.750	Cebus_capucinus
ENSCAFG00000028988	-	98	75.796	ENSCCAG00000022209	-	95	68.790	Cebus_capucinus
ENSCAFG00000028988	-	100	97.500	ENSCATG00000035787	SNRPC	100	97.500	Cercocebus_atys
ENSCAFG00000028988	-	100	97.500	ENSCLAG00000016920	SNRPC	100	97.500	Chinchilla_lanigera
ENSCAFG00000028988	-	99	81.013	ENSCLAG00000010242	-	58	83.158	Chinchilla_lanigera
ENSCAFG00000028988	-	100	88.202	ENSCSAG00000009821	SNRPC	100	88.202	Chlorocebus_sabaeus
ENSCAFG00000028988	-	100	71.875	ENSCHOG00000011439	SNRPC	88	72.152	Choloepus_hoffmanni
ENSCAFG00000028988	-	100	86.875	ENSCPBG00000027142	SNRPC	100	86.250	Chrysemys_picta_bellii
ENSCAFG00000028988	-	100	97.500	ENSCANG00000028035	SNRPC	100	97.500	Colobus_angolensis_palliatus
ENSCAFG00000028988	-	100	77.500	ENSCGRG00001021483	-	100	75.000	Cricetulus_griseus_chok1gshd
ENSCAFG00000028988	-	100	96.875	ENSCGRG00001009011	-	100	96.875	Cricetulus_griseus_chok1gshd
ENSCAFG00000028988	-	100	86.875	ENSCGRG00000005005	Snrpc	99	87.342	Cricetulus_griseus_crigri
ENSCAFG00000028988	-	76	96.721	ENSDNOG00000042403	-	97	96.721	Dasypus_novemcinctus
ENSCAFG00000028988	-	100	96.875	ENSDNOG00000034699	-	99	96.875	Dasypus_novemcinctus
ENSCAFG00000028988	-	100	79.375	ENSDORG00000005955	Snrpc	66	80.380	Dipodomys_ordii
ENSCAFG00000028988	-	95	77.632	ENSDORG00000029823	-	56	93.506	Dipodomys_ordii
ENSCAFG00000028988	-	98	81.529	ENSETEG00000011265	-	100	82.166	Echinops_telfairi
ENSCAFG00000028988	-	52	92.771	ENSETEG00000008756	-	75	92.208	Echinops_telfairi
ENSCAFG00000028988	-	100	97.500	ENSEASG00005021007	SNRPC	100	97.500	Equus_asinus_asinus
ENSCAFG00000028988	-	100	97.500	ENSECAG00000026848	SNRPC	100	97.500	Equus_caballus
ENSCAFG00000028988	-	99	70.440	ENSEEUG00000014633	SNRPC	90	69.811	Erinaceus_europaeus
ENSCAFG00000028988	-	60	96.875	ENSFCAG00000031775	-	56	96.875	Felis_catus
ENSCAFG00000028988	-	100	97.500	ENSFCAG00000044077	-	100	97.500	Felis_catus
ENSCAFG00000028988	-	100	96.250	ENSFALG00000003756	SNRPC	100	96.250	Ficedula_albicollis
ENSCAFG00000028988	-	100	97.500	ENSFDAG00000018111	SNRPC	100	97.500	Fukomys_damarensis
ENSCAFG00000028988	-	100	86.957	ENSGALG00000002773	SNRPC	100	86.335	Gallus_gallus
ENSCAFG00000028988	-	100	86.875	ENSGAGG00000003063	SNRPC	100	86.250	Gopherus_agassizii
ENSCAFG00000028988	-	100	97.500	ENSGGOG00000012499	SNRPC	100	97.500	Gorilla_gorilla
ENSCAFG00000028988	-	100	97.500	ENSHGLG00000013981	SNRPC	100	97.500	Heterocephalus_glaber_female
ENSCAFG00000028988	-	81	73.077	ENSHGLG00000005871	-	100	71.875	Heterocephalus_glaber_female
ENSCAFG00000028988	-	100	84.375	ENSHGLG00100017764	-	100	84.375	Heterocephalus_glaber_male
ENSCAFG00000028988	-	100	97.500	ENSHGLG00100009478	SNRPC	100	97.500	Heterocephalus_glaber_male
ENSCAFG00000028988	-	100	76.875	ENSIPUG00000024851	snrpc	100	76.875	Ictalurus_punctatus
ENSCAFG00000028988	-	100	97.500	ENSSTOG00000013786	SNRPC	100	97.500	Ictidomys_tridecemlineatus
ENSCAFG00000028988	-	100	96.875	ENSJJAG00000021741	Snrpc	100	96.875	Jaculus_jaculus
ENSCAFG00000028988	-	100	97.500	ENSLAFG00000013534	SNRPC	100	97.500	Loxodonta_africana
ENSCAFG00000028988	-	100	96.875	ENSMFAG00000030525	-	100	96.875	Macaca_fascicularis
ENSCAFG00000028988	-	100	97.500	ENSMFAG00000031764	-	100	97.500	Macaca_fascicularis
ENSCAFG00000028988	-	100	96.250	ENSMMUG00000039415	-	100	96.250	Macaca_mulatta
ENSCAFG00000028988	-	100	96.250	ENSMMUG00000000869	-	97	96.250	Macaca_mulatta
ENSCAFG00000028988	-	100	78.750	ENSMMUG00000045425	-	100	79.375	Macaca_mulatta
ENSCAFG00000028988	-	100	97.500	ENSMNEG00000032731	SNRPC	100	97.500	Macaca_nemestrina
ENSCAFG00000028988	-	100	97.500	ENSMLEG00000033916	-	100	97.500	Mandrillus_leucophaeus
ENSCAFG00000028988	-	98	88.462	ENSMLEG00000040224	-	89	80.769	Mandrillus_leucophaeus
ENSCAFG00000028988	-	100	95.625	ENSMGAG00000006054	SNRPC	100	95.625	Meleagris_gallopavo
ENSCAFG00000028988	-	100	96.875	ENSMICG00000032183	-	100	96.875	Microcebus_murinus
ENSCAFG00000028988	-	100	80.000	ENSMICG00000036552	-	87	80.255	Microcebus_murinus
ENSCAFG00000028988	-	100	96.875	ENSMICG00000007339	-	100	96.875	Microcebus_murinus
ENSCAFG00000028988	-	100	80.625	ENSMICG00000009130	-	100	81.875	Microcebus_murinus
ENSCAFG00000028988	-	100	96.875	ENSMOCG00000017609	Snrpc	100	96.875	Microtus_ochrogaster
ENSCAFG00000028988	-	100	96.875	ENSMODG00000013904	-	100	96.875	Monodelphis_domestica
ENSCAFG00000028988	-	100	96.875	MGP_CAROLIEiJ_G0021308	Snrpc	100	96.875	Mus_caroli
ENSCAFG00000028988	-	100	96.875	ENSMUSG00000024217	Snrpc	100	96.875	Mus_musculus
ENSCAFG00000028988	-	74	97.458	MGP_SPRETEiJ_G0022221	-	98	97.458	Mus_spretus
ENSCAFG00000028988	-	100	95.625	ENSMPUG00000003210	SNRPC	100	95.625	Mustela_putorius_furo
ENSCAFG00000028988	-	100	95.625	ENSMLUG00000002488	SNRPC	100	95.625	Myotis_lucifugus
ENSCAFG00000028988	-	100	96.875	ENSNGAG00000019686	Snrpc	100	96.875	Nannospalax_galili
ENSCAFG00000028988	-	100	97.500	ENSNLEG00000034810	SNRPC	100	97.500	Nomascus_leucogenys
ENSCAFG00000028988	-	89	97.203	ENSMEUG00000009300	SNRPC	100	97.203	Notamacropus_eugenii
ENSCAFG00000028988	-	100	96.875	ENSODEG00000020201	-	100	96.875	Octodon_degus
ENSCAFG00000028988	-	100	97.500	ENSODEG00000020370	-	100	97.500	Octodon_degus
ENSCAFG00000028988	-	100	96.250	ENSODEG00000019633	-	100	96.250	Octodon_degus
ENSCAFG00000028988	-	100	97.500	ENSODEG00000018985	-	100	97.500	Octodon_degus
ENSCAFG00000028988	-	100	97.500	ENSODEG00000017080	-	100	97.500	Octodon_degus
ENSCAFG00000028988	-	61	91.753	ENSODEG00000006008	-	69	92.708	Octodon_degus
ENSCAFG00000028988	-	91	93.289	ENSOANG00000003405	SNRPC	100	93.289	Ornithorhynchus_anatinus
ENSCAFG00000028988	-	100	96.250	ENSOCUG00000026430	-	99	96.250	Oryctolagus_cuniculus
ENSCAFG00000028988	-	100	97.500	ENSOCUG00000026668	-	100	97.500	Oryctolagus_cuniculus
ENSCAFG00000028988	-	60	95.833	ENSOCUG00000023292	-	100	86.250	Oryctolagus_cuniculus
ENSCAFG00000028988	-	99	96.835	ENSOGAG00000008755	-	88	96.835	Otolemur_garnettii
ENSCAFG00000028988	-	97	82.581	ENSOGAG00000028405	-	99	78.065	Otolemur_garnettii
ENSCAFG00000028988	-	100	95.625	ENSOGAG00000026269	-	100	95.625	Otolemur_garnettii
ENSCAFG00000028988	-	100	97.500	ENSOARG00000010823	SNRPC	100	97.500	Ovis_aries
ENSCAFG00000028988	-	100	97.500	ENSPPAG00000043871	SNRPC	100	97.500	Pan_paniscus
ENSCAFG00000028988	-	100	97.500	ENSPPRG00000008647	-	100	97.500	Panthera_pardus
ENSCAFG00000028988	-	100	97.500	ENSPTIG00000021867	-	100	97.500	Panthera_tigris_altaica
ENSCAFG00000028988	-	98	62.179	ENSPTIG00000013329	-	62	80.000	Panthera_tigris_altaica
ENSCAFG00000028988	-	100	97.500	ENSPTRG00000018070	SNRPC	100	97.500	Pan_troglodytes
ENSCAFG00000028988	-	100	97.500	ENSPANG00000022802	-	100	97.500	Papio_anubis
ENSCAFG00000028988	-	100	77.500	ENSPANG00000018228	-	94	78.125	Papio_anubis
ENSCAFG00000028988	-	99	86.076	ENSPSIG00000004876	SNRPC	77	85.443	Pelodiscus_sinensis
ENSCAFG00000028988	-	100	85.000	ENSPEMG00000002763	-	100	78.750	Peromyscus_maniculatus_bairdii
ENSCAFG00000028988	-	100	96.875	ENSPEMG00000010773	Snrpc	100	96.875	Peromyscus_maniculatus_bairdii
ENSCAFG00000028988	-	52	97.590	ENSPPYG00000029902	-	84	97.590	Pongo_abelii
ENSCAFG00000028988	-	99	96.835	ENSPCAG00000016885	SNRPC	90	96.835	Procavia_capensis
ENSCAFG00000028988	-	100	97.500	ENSPCOG00000004904	SNRPC	100	97.500	Propithecus_coquereli
ENSCAFG00000028988	-	99	96.203	ENSPVAG00000015597	SNRPC	87	96.203	Pteropus_vampyrus
ENSCAFG00000028988	-	100	96.875	ENSRNOG00000000493	Snrpc	100	96.875	Rattus_norvegicus
ENSCAFG00000028988	-	100	97.500	ENSRBIG00000037567	-	100	97.500	Rhinopithecus_bieti
ENSCAFG00000028988	-	100	96.875	ENSRBIG00000014819	-	100	96.875	Rhinopithecus_bieti
ENSCAFG00000028988	-	100	96.875	ENSRBIG00000022998	-	100	96.875	Rhinopithecus_bieti
ENSCAFG00000028988	-	100	97.500	ENSRROG00000041300	SNRPC	100	97.500	Rhinopithecus_roxellana
ENSCAFG00000028988	-	98	74.522	ENSSBOG00000032882	-	93	75.159	Saimiri_boliviensis_boliviensis
ENSCAFG00000028988	-	95	80.921	ENSSBOG00000032361	-	66	79.167	Saimiri_boliviensis_boliviensis
ENSCAFG00000028988	-	100	97.500	ENSSBOG00000031528	-	100	97.500	Saimiri_boliviensis_boliviensis
ENSCAFG00000028988	-	98	82.166	ENSSBOG00000023189	-	91	75.796	Saimiri_boliviensis_boliviensis
ENSCAFG00000028988	-	99	96.835	ENSSHAG00000000945	-	87	96.835	Sarcophilus_harrisii
ENSCAFG00000028988	-	100	96.250	ENSSPUG00000002502	SNRPC	100	96.250	Sphenodon_punctatus
ENSCAFG00000028988	-	100	97.500	ENSSSCG00000001531	SNRPC	100	97.500	Sus_scrofa
ENSCAFG00000028988	-	100	95.000	ENSTGUG00000001773	SNRPC	100	95.000	Taeniopygia_guttata
ENSCAFG00000028988	-	98	84.713	ENSTBEG00000013022	-	100	83.439	Tupaia_belangeri
ENSCAFG00000028988	-	98	72.611	ENSTBEG00000015356	-	68	89.583	Tupaia_belangeri
ENSCAFG00000028988	-	100	95.625	ENSTTRG00000007827	SNRPC	87	95.625	Tursiops_truncatus
ENSCAFG00000028988	-	75	97.500	ENSUAMG00000014125	SNRPC	81	97.500	Ursus_americanus
ENSCAFG00000028988	-	100	88.202	ENSUMAG00000010869	SNRPC	100	88.202	Ursus_maritimus
ENSCAFG00000028988	-	97	92.258	ENSVVUG00000010467	-	87	84.713	Vulpes_vulpes
ENSCAFG00000028988	-	100	96.250	ENSVVUG00000021947	-	100	96.250	Vulpes_vulpes