EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00020001751 (Gene tree)
Gene ID: 112649146
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Canis_lupus_dingo
Status: putative
Strand: Plus strand
Length: 72522 bases
Position: chrQKWQ01002069.1:5469581-5542102
Accession: 112649146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00020002022	ResIII	PF04851.15	1.4e-12	1	1
ENSCAFP00020002032	ResIII	PF04851.15	1.9e-12	1	1
ENSCAFP00020002032	DEAD	PF00270.29	1.3e-06	1	1
ENSCAFP00020002022	DEAD	PF00270.29	1.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00020002365	SMARCA1-202	3137	-	ENSCAFP00020002032	1018 (aa)	-	-
ENSCAFT00020002354	SMARCA1-201	3257	XM_025431194	ENSCAFP00020002022	1058 (aa)	XP_025286979	UPI000DC694E4

Gene Model

Click here to download ENSCAFG00020001751's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00020001751's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00020001751	SMARCA1	51	41.877	ENSCAFG00020012906	CHD6	71	40.816
ENSCAFG00020001751	SMARCA1	53	43.426	ENSCAFG00020020121	CHD1L	64	42.042
ENSCAFG00020001751	SMARCA1	95	84.000	ENSCAFG00020025641	SMARCA5	92	86.667
ENSCAFG00020001751	SMARCA1	51	32.554	ENSCAFG00020012084	-	64	32.721
ENSCAFG00020001751	SMARCA1	53	48.606	ENSCAFG00020004809	HELLS	68	48.606

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00020001751	SMARCA1	100	98.677	ENSG00000102038	SMARCA1	100	98.677	Homo_sapiens
ENSCAFG00020001751	SMARCA1	92	83.811	ENSAPOG00000016035	smarca5	98	84.245	Acanthochromis_polyacanthus
ENSCAFG00020001751	SMARCA1	100	98.131	ENSAMEG00000015218	SMARCA1	100	98.131	Ailuropoda_melanoleuca
ENSCAFG00020001751	SMARCA1	85	84.275	ENSACIG00000016982	smarca5	99	84.375	Amphilophus_citrinellus
ENSCAFG00020001751	SMARCA1	92	83.811	ENSAOCG00000015578	smarca5	95	82.828	Amphiprion_ocellaris
ENSCAFG00020001751	SMARCA1	92	83.811	ENSAPEG00000011117	smarca5	99	84.316	Amphiprion_percula
ENSCAFG00020001751	SMARCA1	93	83.401	ENSATEG00000012894	smarca5	95	82.828	Anabas_testudineus
ENSCAFG00020001751	SMARCA1	93	93.177	ENSAPLG00000013149	SMARCA1	100	93.177	Anas_platyrhynchos
ENSCAFG00020001751	SMARCA1	97	89.612	ENSACAG00000011376	SMARCA1	95	91.491	Anolis_carolinensis
ENSCAFG00020001751	SMARCA1	98	93.738	ENSANAG00000023098	SMARCA1	100	93.573	Aotus_nancymaae
ENSCAFG00020001751	SMARCA1	96	81.354	ENSACLG00000025356	smarca5	95	83.232	Astatotilapia_calliptera
ENSCAFG00020001751	SMARCA1	88	88.495	ENSAMXG00000011227	smarca1	99	90.182	Astyanax_mexicanus
ENSCAFG00020001751	SMARCA1	98	80.851	ENSAMXG00000005709	smarca5	94	84.103	Astyanax_mexicanus
ENSCAFG00020001751	SMARCA1	99	98.017	ENSBTAG00000002292	SMARCA1	99	96.952	Bos_taurus
ENSCAFG00020001751	SMARCA1	93	63.434	WBGene00002169	isw-1	97	63.434	Caenorhabditis_elegans
ENSCAFG00020001751	SMARCA1	100	98.488	ENSCJAG00000002868	SMARCA1	100	98.488	Callithrix_jacchus
ENSCAFG00020001751	SMARCA1	100	89.767	ENSCAFG00000018673	SMARCA1	100	89.767	Canis_familiaris
ENSCAFG00020001751	SMARCA1	100	98.139	ENSCHIG00000009837	SMARCA1	100	98.115	Capra_hircus
ENSCAFG00020001751	SMARCA1	95	98.600	ENSTSYG00000004240	SMARCA1	98	97.963	Carlito_syrichta
ENSCAFG00020001751	SMARCA1	100	95.019	ENSCPOG00000013601	SMARCA1	95	97.015	Cavia_porcellus
ENSCAFG00020001751	SMARCA1	100	95.463	ENSCCAG00000030817	SMARCA1	100	95.463	Cebus_capucinus
ENSCAFG00020001751	SMARCA1	100	97.570	ENSCATG00000015921	SMARCA1	99	98.647	Cercocebus_atys
ENSCAFG00020001751	SMARCA1	100	96.503	ENSCLAG00000002171	SMARCA1	100	96.503	Chinchilla_lanigera
ENSCAFG00020001751	SMARCA1	100	98.582	ENSCSAG00000008460	SMARCA1	100	98.582	Chlorocebus_sabaeus
ENSCAFG00020001751	SMARCA1	95	92.907	ENSCPBG00000001146	SMARCA1	94	92.993	Chrysemys_picta_bellii
ENSCAFG00020001751	SMARCA1	93	73.085	ENSCING00000004110	swi/snf	98	73.085	Ciona_intestinalis
ENSCAFG00020001751	SMARCA1	92	73.089	ENSCSAVG00000004620	-	100	74.165	Ciona_savignyi
ENSCAFG00020001751	SMARCA1	100	98.582	ENSCANG00000007183	SMARCA1	100	98.582	Colobus_angolensis_palliatus
ENSCAFG00020001751	SMARCA1	100	94.618	ENSCGRG00001010776	Smarca1	100	94.995	Cricetulus_griseus_chok1gshd
ENSCAFG00020001751	SMARCA1	93	95.344	ENSCGRG00000015301	Smarca1	98	95.821	Cricetulus_griseus_crigri
ENSCAFG00020001751	SMARCA1	92	83.811	ENSCSEG00000000328	smarca5	95	83.030	Cynoglossus_semilaevis
ENSCAFG00020001751	SMARCA1	93	83.198	ENSCVAG00000008668	smarca5	99	83.863	Cyprinodon_variegatus
ENSCAFG00020001751	SMARCA1	93	88.889	ENSDARG00000012776	smarca1	94	88.889	Danio_rerio
ENSCAFG00020001751	SMARCA1	95	81.269	ENSDARG00000052348	smarca5	95	82.710	Danio_rerio
ENSCAFG00020001751	SMARCA1	98	96.329	ENSDNOG00000004315	SMARCA1	99	96.329	Dasypus_novemcinctus
ENSCAFG00020001751	SMARCA1	98	95.749	ENSDORG00000009270	Smarca1	99	95.556	Dipodomys_ordii
ENSCAFG00020001751	SMARCA1	92	73.183	FBgn0011604	Iswi	98	72.512	Drosophila_melanogaster
ENSCAFG00020001751	SMARCA1	77	92.857	ENSETEG00000017426	SMARCA1	85	92.857	Echinops_telfairi
ENSCAFG00020001751	SMARCA1	93	80.899	ENSEBUG00000001239	smarca5	96	80.899	Eptatretus_burgeri
ENSCAFG00020001751	SMARCA1	97	92.308	ENSEASG00005008218	SMARCA1	100	93.838	Equus_asinus_asinus
ENSCAFG00020001751	SMARCA1	100	98.775	ENSECAG00000012106	SMARCA1	100	98.775	Equus_caballus
ENSCAFG00020001751	SMARCA1	75	98.013	ENSEEUG00000014927	SMARCA1	82	98.013	Erinaceus_europaeus
ENSCAFG00020001751	SMARCA1	94	86.341	ENSELUG00000010515	smarca1	98	86.697	Esox_lucius
ENSCAFG00020001751	SMARCA1	100	99.433	ENSFCAG00000018496	SMARCA1	100	99.433	Felis_catus
ENSCAFG00020001751	SMARCA1	86	93.209	ENSFALG00000000209	SMARCA1	98	93.311	Ficedula_albicollis
ENSCAFG00020001751	SMARCA1	93	96.771	ENSFDAG00000009818	SMARCA1	97	96.771	Fukomys_damarensis
ENSCAFG00020001751	SMARCA1	93	83.605	ENSFHEG00000007687	smarca5	94	83.030	Fundulus_heteroclitus
ENSCAFG00020001751	SMARCA1	94	90.937	ENSGALG00000008431	SMARCA1	96	92.916	Gallus_gallus
ENSCAFG00020001751	SMARCA1	93	83.605	ENSGAFG00000017731	smarca5	95	83.030	Gambusia_affinis
ENSCAFG00020001751	SMARCA1	92	93.621	ENSGAGG00000023575	SMARCA1	100	93.621	Gopherus_agassizii
ENSCAFG00020001751	SMARCA1	69	96.000	ENSGGOG00000012841	-	95	96.000	Gorilla_gorilla
ENSCAFG00020001751	SMARCA1	100	96.692	ENSHGLG00000003080	SMARCA1	100	96.692	Heterocephalus_glaber_female
ENSCAFG00020001751	SMARCA1	94	96.503	ENSHGLG00100001102	SMARCA1	100	96.503	Heterocephalus_glaber_male
ENSCAFG00020001751	SMARCA1	92	83.640	ENSHCOG00000005458	smarca5	95	82.929	Hippocampus_comes
ENSCAFG00020001751	SMARCA1	97	80.705	ENSIPUG00000005229	SMARCA5	97	82.759	Ictalurus_punctatus
ENSCAFG00020001751	SMARCA1	95	85.149	ENSIPUG00000016905	Smarca1	99	86.925	Ictalurus_punctatus
ENSCAFG00020001751	SMARCA1	100	97.921	ENSSTOG00000014524	SMARCA1	100	97.921	Ictidomys_tridecemlineatus
ENSCAFG00020001751	SMARCA1	100	95.673	ENSJJAG00000002593	Smarca1	100	95.579	Jaculus_jaculus
ENSCAFG00020001751	SMARCA1	92	83.845	ENSKMAG00000003777	smarca5	95	83.131	Kryptolebias_marmoratus
ENSCAFG00020001751	SMARCA1	88	83.996	ENSLBEG00000013295	SMARCA1	100	85.082	Labrus_bergylta
ENSCAFG00020001751	SMARCA1	93	82.727	ENSLBEG00000018112	smarca5	95	82.727	Labrus_bergylta
ENSCAFG00020001751	SMARCA1	96	89.152	ENSLACG00000016697	SMARCA1	98	90.090	Latimeria_chalumnae
ENSCAFG00020001751	SMARCA1	94	88.855	ENSLOCG00000014591	smarca1	97	88.855	Lepisosteus_oculatus
ENSCAFG00020001751	SMARCA1	95	96.720	ENSLAFG00000000896	SMARCA1	100	96.720	Loxodonta_africana
ENSCAFG00020001751	SMARCA1	100	98.677	ENSMFAG00000002117	SMARCA1	99	98.647	Macaca_fascicularis
ENSCAFG00020001751	SMARCA1	100	97.570	ENSMMUG00000008818	SMARCA1	99	98.647	Macaca_mulatta
ENSCAFG00020001751	SMARCA1	100	97.570	ENSMNEG00000041768	SMARCA1	99	98.647	Macaca_nemestrina
ENSCAFG00020001751	SMARCA1	100	98.582	ENSMLEG00000043198	SMARCA1	100	98.582	Mandrillus_leucophaeus
ENSCAFG00020001751	SMARCA1	93	83.809	ENSMAMG00000014294	smarca5	96	82.783	Mastacembelus_armatus
ENSCAFG00020001751	SMARCA1	96	81.354	ENSMZEG00005009369	smarca5	95	83.232	Maylandia_zebra
ENSCAFG00020001751	SMARCA1	95	91.133	ENSMGAG00000007042	SMARCA1	99	91.296	Meleagris_gallopavo
ENSCAFG00020001751	SMARCA1	98	95.962	ENSMAUG00000008133	Smarca1	99	95.962	Mesocricetus_auratus
ENSCAFG00020001751	SMARCA1	100	98.110	ENSMICG00000015768	SMARCA1	100	98.110	Microcebus_murinus
ENSCAFG00020001751	SMARCA1	100	95.673	ENSMOCG00000009464	Smarca1	100	95.673	Microtus_ochrogaster
ENSCAFG00020001751	SMARCA1	93	81.212	ENSMMOG00000005547	smarca5	99	81.212	Mola_mola
ENSCAFG00020001751	SMARCA1	98	89.749	ENSMODG00000013187	-	99	89.642	Monodelphis_domestica
ENSCAFG00020001751	SMARCA1	92	83.436	ENSMALG00000002081	smarca5	97	83.025	Monopterus_albus
ENSCAFG00020001751	SMARCA1	100	95.767	MGP_CAROLIEiJ_G0033034	Smarca1	100	95.579	Mus_caroli
ENSCAFG00020001751	SMARCA1	100	95.767	ENSMUSG00000031099	Smarca1	100	95.579	Mus_musculus
ENSCAFG00020001751	SMARCA1	100	95.767	MGP_PahariEiJ_G0031579	Smarca1	100	95.579	Mus_pahari
ENSCAFG00020001751	SMARCA1	100	95.861	MGP_SPRETEiJ_G0034192	Smarca1	100	95.673	Mus_spretus
ENSCAFG00020001751	SMARCA1	100	98.505	ENSMPUG00000017423	SMARCA1	95	98.505	Mustela_putorius_furo
ENSCAFG00020001751	SMARCA1	98	95.347	ENSMLUG00000029614	SMARCA1	100	94.310	Myotis_lucifugus
ENSCAFG00020001751	SMARCA1	98	96.442	ENSNGAG00000006492	Smarca1	99	96.442	Nannospalax_galili
ENSCAFG00020001751	SMARCA1	93	83.910	ENSNBRG00000004463	smarca5	99	83.333	Neolamprologus_brichardi
ENSCAFG00020001751	SMARCA1	100	96.916	ENSNLEG00000015179	SMARCA1	100	96.916	Nomascus_leucogenys
ENSCAFG00020001751	SMARCA1	89	82.143	ENSMEUG00000008819	SMARCA1	99	82.124	Notamacropus_eugenii
ENSCAFG00020001751	SMARCA1	98	95.224	ENSODEG00000012163	SMARCA1	99	95.224	Octodon_degus
ENSCAFG00020001751	SMARCA1	96	81.452	ENSONIG00000009993	smarca5	95	83.333	Oreochromis_niloticus
ENSCAFG00020001751	SMARCA1	92	93.724	ENSOANG00000002862	SMARCA1	100	93.724	Ornithorhynchus_anatinus
ENSCAFG00020001751	SMARCA1	100	96.314	ENSOCUG00000001047	SMARCA1	100	96.314	Oryctolagus_cuniculus
ENSCAFG00020001751	SMARCA1	92	83.742	ENSORLG00000021998	smarca5	95	83.030	Oryzias_latipes
ENSCAFG00020001751	SMARCA1	92	83.845	ENSORLG00020017679	smarca5	95	83.131	Oryzias_latipes_hni
ENSCAFG00020001751	SMARCA1	92	83.742	ENSORLG00015017210	smarca5	95	82.929	Oryzias_latipes_hsok
ENSCAFG00020001751	SMARCA1	92	83.742	ENSOMEG00000000086	smarca5	95	82.929	Oryzias_melastigma
ENSCAFG00020001751	SMARCA1	98	97.135	ENSOGAG00000004399	SMARCA1	99	97.135	Otolemur_garnettii
ENSCAFG00020001751	SMARCA1	95	97.828	ENSOARG00000014638	SMARCA1	100	99.286	Ovis_aries
ENSCAFG00020001751	SMARCA1	100	98.677	ENSPPAG00000034647	SMARCA1	100	98.677	Pan_paniscus
ENSCAFG00020001751	SMARCA1	100	99.622	ENSPPRG00000008929	SMARCA1	100	99.622	Panthera_pardus
ENSCAFG00020001751	SMARCA1	95	97.738	ENSPTIG00000000915	SMARCA1	98	97.738	Panthera_tigris_altaica
ENSCAFG00020001751	SMARCA1	100	98.677	ENSPTRG00000049876	SMARCA1	99	98.647	Pan_troglodytes
ENSCAFG00020001751	SMARCA1	100	98.677	ENSPANG00000003871	SMARCA1	100	98.677	Papio_anubis
ENSCAFG00020001751	SMARCA1	89	87.012	ENSPKIG00000013411	smarca1	98	86.826	Paramormyrops_kingsleyae
ENSCAFG00020001751	SMARCA1	95	91.609	ENSPSIG00000010101	SMARCA1	100	93.313	Pelodiscus_sinensis
ENSCAFG00020001751	SMARCA1	98	96.538	ENSPEMG00000017503	Smarca1	99	96.538	Peromyscus_maniculatus_bairdii
ENSCAFG00020001751	SMARCA1	95	92.208	ENSPCIG00000015460	SMARCA1	98	92.292	Phascolarctos_cinereus
ENSCAFG00020001751	SMARCA1	92	83.845	ENSPFOG00000007649	smarca5	95	83.030	Poecilia_formosa
ENSCAFG00020001751	SMARCA1	92	83.845	ENSPLAG00000003363	smarca5	95	83.030	Poecilia_latipinna
ENSCAFG00020001751	SMARCA1	92	83.742	ENSPMEG00000019849	smarca5	95	82.929	Poecilia_mexicana
ENSCAFG00020001751	SMARCA1	92	83.742	ENSPREG00000023250	smarca5	95	82.929	Poecilia_reticulata
ENSCAFG00020001751	SMARCA1	98	96.146	ENSPPYG00000020703	SMARCA1	100	95.936	Pongo_abelii
ENSCAFG00020001751	SMARCA1	76	89.189	ENSPCOG00000020722	SMARCA1	94	93.686	Propithecus_coquereli
ENSCAFG00020001751	SMARCA1	92	96.525	ENSPVAG00000003805	SMARCA1	94	96.525	Pteropus_vampyrus
ENSCAFG00020001751	SMARCA1	55	84.658	ENSPNYG00000012299	smarca5	92	83.467	Pundamilia_nyererei
ENSCAFG00020001751	SMARCA1	100	96.503	ENSRNOG00000003762	Smarca1	100	96.503	Rattus_norvegicus
ENSCAFG00020001751	SMARCA1	100	98.582	ENSRROG00000034167	SMARCA1	100	98.582	Rhinopithecus_roxellana
ENSCAFG00020001751	SMARCA1	96	96.615	ENSSBOG00000020641	SMARCA1	100	99.082	Saimiri_boliviensis_boliviensis
ENSCAFG00020001751	SMARCA1	92	86.639	ENSSHAG00000013518	SMARCA1	99	86.639	Sarcophilus_harrisii
ENSCAFG00020001751	SMARCA1	98	85.314	ENSSFOG00015009043	smarca1	98	87.675	Scleropages_formosus
ENSCAFG00020001751	SMARCA1	95	81.665	ENSSFOG00015016794	smarca5	100	83.711	Scleropages_formosus
ENSCAFG00020001751	SMARCA1	93	82.573	ENSSMAG00000004801	smarca5	95	82.573	Scophthalmus_maximus
ENSCAFG00020001751	SMARCA1	93	83.299	ENSSDUG00000020690	smarca5	96	82.727	Seriola_dumerili
ENSCAFG00020001751	SMARCA1	93	83.299	ENSSLDG00000025190	smarca5	96	82.727	Seriola_lalandi_dorsalis
ENSCAFG00020001751	SMARCA1	85	88.807	ENSSARG00000000842	SMARCA1	92	88.807	Sorex_araneus
ENSCAFG00020001751	SMARCA1	92	92.323	ENSSPUG00000000590	SMARCA1	94	92.308	Sphenodon_punctatus
ENSCAFG00020001751	SMARCA1	93	83.401	ENSSPAG00000002894	smarca5	97	84.245	Stegastes_partitus
ENSCAFG00020001751	SMARCA1	98	98.555	ENSSSCG00000012649	SMARCA1	99	98.555	Sus_scrofa
ENSCAFG00020001751	SMARCA1	93	92.668	ENSTGUG00000003899	-	100	92.668	Taeniopygia_guttata
ENSCAFG00020001751	SMARCA1	93	83.503	ENSTRUG00000014094	smarca5	95	82.929	Takifugu_rubripes
ENSCAFG00020001751	SMARCA1	92	82.787	ENSTNIG00000017717	smarca5	94	81.919	Tetraodon_nigroviridis
ENSCAFG00020001751	SMARCA1	92	90.192	ENSTBEG00000014973	SMARCA1	99	90.192	Tupaia_belangeri
ENSCAFG00020001751	SMARCA1	92	94.710	ENSTTRG00000006168	SMARCA1	99	94.710	Tursiops_truncatus
ENSCAFG00020001751	SMARCA1	100	99.433	ENSUAMG00000020201	SMARCA1	100	99.433	Ursus_americanus
ENSCAFG00020001751	SMARCA1	95	93.874	ENSUMAG00000004073	SMARCA1	97	99.757	Ursus_maritimus
ENSCAFG00020001751	SMARCA1	75	99.675	ENSVPAG00000010492	-	79	99.675	Vicugna_pacos
ENSCAFG00020001751	SMARCA1	95	99.900	ENSVVUG00000008878	SMARCA1	99	99.900	Vulpes_vulpes
ENSCAFG00020001751	SMARCA1	94	89.548	ENSXETG00000001526	smarca1	99	89.548	Xenopus_tropicalis
ENSCAFG00020001751	SMARCA1	93	83.503	ENSXCOG00000011170	smarca5	98	82.929	Xiphophorus_couchianus
ENSCAFG00020001751	SMARCA1	93	83.503	ENSXMAG00000009678	smarca5	97	85.088	Xiphophorus_maculatus