EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00020002009 (Gene tree)
Gene ID: 112669569
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Canis_lupus_dingo
Status: putative
Strand: Plus strand
Length: 98746 bases
Position: chrQKWQ01001821.1:18405641-18504386
Accession: 112669569
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00020002358	RRM_1	PF00076.22	1.3e-32	1	2
ENSCAFP00020002358	RRM_1	PF00076.22	1.3e-32	2	2
ENSCAFP00020002361	RRM_1	PF00076.22	3.2e-32	1	2
ENSCAFP00020002361	RRM_1	PF00076.22	3.2e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00020002736	PSPC1-201	1994	-	ENSCAFP00020002358	391 (aa)	-	-
ENSCAFT00020002740	PSPC1-202	2700	-	ENSCAFP00020002361	521 (aa)	XP_025318582	UPI000DC6BD15

Gene Model

Click here to download ENSCAFG00020002009's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00020002009's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00020002009	PSPC1	57	73.246	ENSCAFG00020010702	-	78	62.057
ENSCAFG00020002009	PSPC1	83	69.789	ENSCAFG00020004881	-	54	65.847
ENSCAFG00020002009	PSPC1	74	74.394	ENSCAFG00020020298	-	77	67.409

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00020002009	PSPC1	100	98.853	ENSG00000121390	PSPC1	100	98.853	Homo_sapiens
ENSCAFG00020002009	PSPC1	83	81.173	ENSAPOG00000015946	pspc1	79	73.721	Acanthochromis_polyacanthus
ENSCAFG00020002009	PSPC1	100	99.616	ENSAMEG00000017420	PSPC1	100	99.616	Ailuropoda_melanoleuca
ENSCAFG00020002009	PSPC1	98	63.846	ENSACIG00000018695	pspc1	87	59.660	Amphilophus_citrinellus
ENSCAFG00020002009	PSPC1	83	80.556	ENSAOCG00000005279	pspc1	78	73.256	Amphiprion_ocellaris
ENSCAFG00020002009	PSPC1	83	80.556	ENSAPEG00000015927	pspc1	79	73.256	Amphiprion_percula
ENSCAFG00020002009	PSPC1	83	67.593	ENSATEG00000004878	pspc1	76	62.350	Anabas_testudineus
ENSCAFG00020002009	PSPC1	77	93.812	ENSAPLG00000006246	PSPC1	100	93.812	Anas_platyrhynchos
ENSCAFG00020002009	PSPC1	81	75.786	ENSAPLG00000003643	SFPQ	83	59.013	Anas_platyrhynchos
ENSCAFG00020002009	PSPC1	73	70.732	ENSACAG00000013307	-	55	66.102	Anolis_carolinensis
ENSCAFG00020002009	PSPC1	89	91.631	ENSACAG00000002093	PSPC1	88	91.845	Anolis_carolinensis
ENSCAFG00020002009	PSPC1	100	98.848	ENSANAG00000000059	PSPC1	100	98.848	Aotus_nancymaae
ENSCAFG00020002009	PSPC1	98	63.980	ENSACLG00000027220	pspc1	87	58.887	Astatotilapia_calliptera
ENSCAFG00020002009	PSPC1	82	79.573	ENSAMXG00000036881	pspc1	80	73.103	Astyanax_mexicanus
ENSCAFG00020002009	PSPC1	100	96.353	ENSBTAG00000003934	PSPC1	100	96.353	Bos_taurus
ENSCAFG00020002009	PSPC1	100	98.848	ENSCJAG00000004554	PSPC1	100	98.848	Callithrix_jacchus
ENSCAFG00020002009	PSPC1	100	96.353	ENSCHIG00000016708	PSPC1	100	96.353	Capra_hircus
ENSCAFG00020002009	PSPC1	77	92.040	ENSTSYG00000032882	PSPC1	93	85.748	Carlito_syrichta
ENSCAFG00020002009	PSPC1	100	97.313	ENSCPOG00000000395	PSPC1	100	97.313	Cavia_porcellus
ENSCAFG00020002009	PSPC1	100	98.848	ENSCCAG00000033498	PSPC1	100	98.848	Cebus_capucinus
ENSCAFG00020002009	PSPC1	100	98.470	ENSCATG00000036434	PSPC1	100	98.470	Cercocebus_atys
ENSCAFG00020002009	PSPC1	88	88.121	ENSCLAG00000005241	PSPC1	99	88.121	Chinchilla_lanigera
ENSCAFG00020002009	PSPC1	98	96.373	ENSCHOG00000008913	PSPC1	100	90.249	Choloepus_hoffmanni
ENSCAFG00020002009	PSPC1	99	86.692	ENSCPBG00000020859	PSPC1	99	87.838	Chrysemys_picta_bellii
ENSCAFG00020002009	PSPC1	79	58.766	ENSCSAVG00000003533	-	53	61.786	Ciona_savignyi
ENSCAFG00020002009	PSPC1	67	100.000	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSCAFG00020002009	PSPC1	100	97.132	ENSCGRG00001018368	Pspc1	100	97.132	Cricetulus_griseus_chok1gshd
ENSCAFG00020002009	PSPC1	100	97.132	ENSCGRG00000011724	Pspc1	100	97.132	Cricetulus_griseus_crigri
ENSCAFG00020002009	PSPC1	81	78.616	ENSCVAG00000007679	-	78	68.483	Cyprinodon_variegatus
ENSCAFG00020002009	PSPC1	98	72.021	ENSDARG00000006621	pspc1	100	67.391	Danio_rerio
ENSCAFG00020002009	PSPC1	100	96.558	ENSDNOG00000011078	PSPC1	100	96.558	Dasypus_novemcinctus
ENSCAFG00020002009	PSPC1	100	94.073	ENSDORG00000016050	Pspc1	100	92.543	Dipodomys_ordii
ENSCAFG00020002009	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSCAFG00020002009	PSPC1	82	73.313	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSCAFG00020002009	PSPC1	82	45.087	ENSEBUG00000010133	pspc1	72	51.273	Eptatretus_burgeri
ENSCAFG00020002009	PSPC1	100	98.464	ENSEASG00005000119	PSPC1	100	98.464	Equus_asinus_asinus
ENSCAFG00020002009	PSPC1	100	98.464	ENSECAG00000017286	PSPC1	100	98.464	Equus_caballus
ENSCAFG00020002009	PSPC1	88	82.188	ENSEEUG00000011288	-	100	65.067	Erinaceus_europaeus
ENSCAFG00020002009	PSPC1	98	71.939	ENSELUG00000003746	pspc1	78	81.651	Esox_lucius
ENSCAFG00020002009	PSPC1	100	99.488	ENSFCAG00000027841	PSPC1	100	99.488	Felis_catus
ENSCAFG00020002009	PSPC1	89	94.647	ENSFALG00000008750	PSPC1	99	86.792	Ficedula_albicollis
ENSCAFG00020002009	PSPC1	100	95.202	ENSFDAG00000002617	PSPC1	100	95.202	Fukomys_damarensis
ENSCAFG00020002009	PSPC1	74	82.986	ENSGMOG00000015074	pspc1	86	66.091	Gadus_morhua
ENSCAFG00020002009	PSPC1	99	87.666	ENSGALG00000017142	PSPC1	99	87.838	Gallus_gallus
ENSCAFG00020002009	PSPC1	83	78.154	ENSGAFG00000006327	pspc1	67	78.154	Gambusia_affinis
ENSCAFG00020002009	PSPC1	85	72.810	ENSGACG00000014901	pspc1	92	73.414	Gasterosteus_aculeatus
ENSCAFG00020002009	PSPC1	84	73.193	ENSGAGG00000017325	-	56	68.306	Gopherus_agassizii
ENSCAFG00020002009	PSPC1	99	86.692	ENSGAGG00000019164	PSPC1	99	87.838	Gopherus_agassizii
ENSCAFG00020002009	PSPC1	100	98.662	ENSGGOG00000003414	PSPC1	100	98.662	Gorilla_gorilla
ENSCAFG00020002009	PSPC1	98	70.202	ENSHBUG00000001139	pspc1	87	69.742	Haplochromis_burtoni
ENSCAFG00020002009	PSPC1	100	97.505	ENSHGLG00000018811	PSPC1	100	97.505	Heterocephalus_glaber_female
ENSCAFG00020002009	PSPC1	89	93.103	ENSHGLG00100007962	PSPC1	100	93.103	Heterocephalus_glaber_male
ENSCAFG00020002009	PSPC1	83	74.154	ENSHCOG00000013251	pspc1	83	70.053	Hippocampus_comes
ENSCAFG00020002009	PSPC1	98	73.834	ENSIPUG00000013192	pspc1	88	73.673	Ictalurus_punctatus
ENSCAFG00020002009	PSPC1	100	98.279	ENSSTOG00000026833	PSPC1	100	98.279	Ictidomys_tridecemlineatus
ENSCAFG00020002009	PSPC1	100	97.323	ENSJJAG00000018334	Pspc1	100	97.323	Jaculus_jaculus
ENSCAFG00020002009	PSPC1	88	55.724	ENSKMAG00000013525	-	84	54.409	Kryptolebias_marmoratus
ENSCAFG00020002009	PSPC1	94	73.098	ENSLBEG00000004474	pspc1	70	77.744	Labrus_bergylta
ENSCAFG00020002009	PSPC1	99	76.394	ENSLACG00000010762	PSPC1	88	85.129	Latimeria_chalumnae
ENSCAFG00020002009	PSPC1	88	84.382	ENSLOCG00000010832	pspc1	91	84.382	Lepisosteus_oculatus
ENSCAFG00020002009	PSPC1	100	96.941	ENSLAFG00000010968	PSPC1	100	96.941	Loxodonta_africana
ENSCAFG00020002009	PSPC1	100	98.470	ENSMFAG00000032728	PSPC1	100	98.470	Macaca_fascicularis
ENSCAFG00020002009	PSPC1	100	98.470	ENSMMUG00000020262	PSPC1	100	98.470	Macaca_mulatta
ENSCAFG00020002009	PSPC1	100	98.470	ENSMNEG00000027401	PSPC1	100	98.470	Macaca_nemestrina
ENSCAFG00020002009	PSPC1	100	99.248	ENSMLEG00000039043	PSPC1	100	100.000	Mandrillus_leucophaeus
ENSCAFG00020002009	PSPC1	83	78.086	ENSMAMG00000004333	pspc1	87	62.260	Mastacembelus_armatus
ENSCAFG00020002009	PSPC1	98	63.980	ENSMZEG00005005726	pspc1	87	58.887	Maylandia_zebra
ENSCAFG00020002009	PSPC1	78	93.596	ENSMGAG00000015134	PSPC1	100	93.596	Meleagris_gallopavo
ENSCAFG00020002009	PSPC1	98	90.674	ENSMAUG00000021067	Pspc1	99	89.805	Mesocricetus_auratus
ENSCAFG00020002009	PSPC1	100	98.088	ENSMICG00000013970	PSPC1	100	98.088	Microcebus_murinus
ENSCAFG00020002009	PSPC1	100	97.132	ENSMOCG00000006060	Pspc1	100	97.132	Microtus_ochrogaster
ENSCAFG00020002009	PSPC1	90	53.501	ENSMMOG00000004352	pspc1	58	52.923	Mola_mola
ENSCAFG00020002009	PSPC1	98	96.891	ENSMODG00000008029	PSPC1	78	96.082	Monodelphis_domestica
ENSCAFG00020002009	PSPC1	83	77.469	ENSMALG00000008914	pspc1	88	67.591	Monopterus_albus
ENSCAFG00020002009	PSPC1	100	97.137	MGP_CAROLIEiJ_G0019341	Pspc1	100	97.137	Mus_caroli
ENSCAFG00020002009	PSPC1	100	97.328	ENSMUSG00000021938	Pspc1	100	97.328	Mus_musculus
ENSCAFG00020002009	PSPC1	100	97.137	MGP_PahariEiJ_G0030359	Pspc1	100	97.137	Mus_pahari
ENSCAFG00020002009	PSPC1	100	97.137	MGP_SPRETEiJ_G0020232	Pspc1	100	97.137	Mus_spretus
ENSCAFG00020002009	PSPC1	100	99.424	ENSMPUG00000013347	PSPC1	100	99.424	Mustela_putorius_furo
ENSCAFG00020002009	PSPC1	100	96.947	ENSMLUG00000017663	PSPC1	100	96.947	Myotis_lucifugus
ENSCAFG00020002009	PSPC1	100	97.323	ENSNGAG00000011271	Pspc1	100	97.323	Nannospalax_galili
ENSCAFG00020002009	PSPC1	98	64.899	ENSNBRG00000014059	pspc1	92	61.713	Neolamprologus_brichardi
ENSCAFG00020002009	PSPC1	100	98.662	ENSNLEG00000001294	PSPC1	100	98.662	Nomascus_leucogenys
ENSCAFG00020002009	PSPC1	84	93.750	ENSMEUG00000000476	PSPC1	84	92.578	Notamacropus_eugenii
ENSCAFG00020002009	PSPC1	98	88.802	ENSODEG00000019012	-	100	84.820	Octodon_degus
ENSCAFG00020002009	PSPC1	100	86.372	ENSODEG00000007817	-	100	80.076	Octodon_degus
ENSCAFG00020002009	PSPC1	98	70.455	ENSONIG00000012010	pspc1	87	69.068	Oreochromis_niloticus
ENSCAFG00020002009	PSPC1	99	66.219	ENSOANG00000011381	-	99	64.299	Ornithorhynchus_anatinus
ENSCAFG00020002009	PSPC1	77	97.744	ENSOANG00000009017	-	100	97.744	Ornithorhynchus_anatinus
ENSCAFG00020002009	PSPC1	100	97.897	ENSOCUG00000006153	PSPC1	100	97.897	Oryctolagus_cuniculus
ENSCAFG00020002009	PSPC1	83	79.012	ENSORLG00000004232	-	87	64.389	Oryzias_latipes
ENSCAFG00020002009	PSPC1	83	78.395	ENSORLG00020000578	PSPC1	87	67.021	Oryzias_latipes_hni
ENSCAFG00020002009	PSPC1	83	79.321	ENSORLG00015017480	pspc1	77	72.087	Oryzias_latipes_hsok
ENSCAFG00020002009	PSPC1	54	82.857	ENSOMEG00000003779	pspc1	96	82.775	Oryzias_melastigma
ENSCAFG00020002009	PSPC1	100	98.662	ENSOGAG00000012643	PSPC1	100	98.662	Otolemur_garnettii
ENSCAFG00020002009	PSPC1	100	91.587	ENSOARG00000014163	PSPC1	100	91.587	Ovis_aries
ENSCAFG00020002009	PSPC1	84	99.695	ENSPPAG00000009836	PSPC1	93	99.695	Pan_paniscus
ENSCAFG00020002009	PSPC1	100	99.424	ENSPPRG00000008833	PSPC1	100	99.424	Panthera_pardus
ENSCAFG00020002009	PSPC1	100	83.877	ENSPTIG00000016917	PSPC1	100	83.877	Panthera_tigris_altaica
ENSCAFG00020002009	PSPC1	100	97.964	ENSPTRG00000005677	PSPC1	100	97.964	Pan_troglodytes
ENSCAFG00020002009	PSPC1	100	98.662	ENSPANG00000001992	PSPC1	100	98.662	Papio_anubis
ENSCAFG00020002009	PSPC1	98	76.042	ENSPKIG00000003578	pspc1	81	77.419	Paramormyrops_kingsleyae
ENSCAFG00020002009	PSPC1	99	86.415	ENSPSIG00000005168	PSPC1	99	87.476	Pelodiscus_sinensis
ENSCAFG00020002009	PSPC1	82	69.018	ENSPMGG00000015135	pspc1	80	73.611	Periophthalmus_magnuspinnatus
ENSCAFG00020002009	PSPC1	100	97.514	ENSPEMG00000015214	Pspc1	100	97.514	Peromyscus_maniculatus_bairdii
ENSCAFG00020002009	PSPC1	71	44.948	ENSPMAG00000004618	pspc1	79	47.692	Petromyzon_marinus
ENSCAFG00020002009	PSPC1	99	96.552	ENSPCIG00000017680	PSPC1	100	96.552	Phascolarctos_cinereus
ENSCAFG00020002009	PSPC1	94	71.540	ENSPFOG00000003362	pspc1	88	68.076	Poecilia_formosa
ENSCAFG00020002009	PSPC1	76	68.687	ENSPLAG00000004407	-	51	60.976	Poecilia_latipinna
ENSCAFG00020002009	PSPC1	97	69.773	ENSPLAG00000011540	pspc1	87	68.076	Poecilia_latipinna
ENSCAFG00020002009	PSPC1	97	69.270	ENSPMEG00000008322	pspc1	87	67.653	Poecilia_mexicana
ENSCAFG00020002009	PSPC1	76	68.919	ENSPMEG00000001025	-	51	60.811	Poecilia_mexicana
ENSCAFG00020002009	PSPC1	97	69.018	ENSPREG00000007786	pspc1	87	67.653	Poecilia_reticulata
ENSCAFG00020002009	PSPC1	100	98.279	ENSPPYG00000005186	PSPC1	100	98.279	Pongo_abelii
ENSCAFG00020002009	PSPC1	72	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSCAFG00020002009	PSPC1	98	98.446	ENSPCOG00000014364	PSPC1	100	94.073	Propithecus_coquereli
ENSCAFG00020002009	PSPC1	98	97.656	ENSPVAG00000005036	PSPC1	100	95.010	Pteropus_vampyrus
ENSCAFG00020002009	PSPC1	98	64.232	ENSPNYG00000008893	pspc1	87	58.887	Pundamilia_nyererei
ENSCAFG00020002009	PSPC1	98	73.385	ENSPNAG00000016511	pspc1	89	72.611	Pygocentrus_nattereri
ENSCAFG00020002009	PSPC1	100	97.323	ENSRNOG00000020782	Pspc1	100	97.323	Rattus_norvegicus
ENSCAFG00020002009	PSPC1	93	98.973	ENSRBIG00000036057	PSPC1	100	98.973	Rhinopithecus_bieti
ENSCAFG00020002009	PSPC1	100	98.662	ENSRROG00000036334	PSPC1	100	98.662	Rhinopithecus_roxellana
ENSCAFG00020002009	PSPC1	79	88.620	ENSSBOG00000028172	PSPC1	90	95.290	Saimiri_boliviensis_boliviensis
ENSCAFG00020002009	PSPC1	100	90.476	ENSSHAG00000004696	PSPC1	100	89.905	Sarcophilus_harrisii
ENSCAFG00020002009	PSPC1	83	85.583	ENSSFOG00015001395	pspc1	90	78.241	Scleropages_formosus
ENSCAFG00020002009	PSPC1	87	75.072	ENSSMAG00000001761	pspc1	82	76.970	Scophthalmus_maximus
ENSCAFG00020002009	PSPC1	83	81.173	ENSSDUG00000010651	pspc1	76	74.186	Seriola_dumerili
ENSCAFG00020002009	PSPC1	83	74.303	ENSSLDG00000004284	pspc1	81	62.269	Seriola_lalandi_dorsalis
ENSCAFG00020002009	PSPC1	100	90.403	ENSSARG00000000888	PSPC1	100	90.403	Sorex_araneus
ENSCAFG00020002009	PSPC1	82	66.044	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSCAFG00020002009	PSPC1	99	75.283	ENSSPUG00000008550	PSPC1	99	75.385	Sphenodon_punctatus
ENSCAFG00020002009	PSPC1	87	78.466	ENSSPAG00000001921	pspc1	77	73.256	Stegastes_partitus
ENSCAFG00020002009	PSPC1	100	97.318	ENSSSCG00000009569	PSPC1	100	97.318	Sus_scrofa
ENSCAFG00020002009	PSPC1	89	94.647	ENSTGUG00000011295	PSPC1	100	94.647	Taeniopygia_guttata
ENSCAFG00020002009	PSPC1	83	71.077	ENSTRUG00000011335	pspc1	77	66.180	Takifugu_rubripes
ENSCAFG00020002009	PSPC1	83	72.923	ENSTNIG00000010358	pspc1	84	66.746	Tetraodon_nigroviridis
ENSCAFG00020002009	PSPC1	98	86.719	ENSTBEG00000002361	PSPC1	100	75.816	Tupaia_belangeri
ENSCAFG00020002009	PSPC1	100	97.313	ENSTTRG00000003343	PSPC1	100	97.313	Tursiops_truncatus
ENSCAFG00020002009	PSPC1	89	99.427	ENSUAMG00000012309	PSPC1	100	99.427	Ursus_americanus
ENSCAFG00020002009	PSPC1	93	99.384	ENSUMAG00000013993	PSPC1	100	99.384	Ursus_maritimus
ENSCAFG00020002009	PSPC1	77	98.997	ENSVPAG00000010029	PSPC1	100	98.997	Vicugna_pacos
ENSCAFG00020002009	PSPC1	100	100.000	ENSVVUG00000006414	PSPC1	100	100.000	Vulpes_vulpes
ENSCAFG00020002009	PSPC1	98	68.434	ENSXCOG00000017438	pspc1	77	76.994	Xiphophorus_couchianus
ENSCAFG00020002009	PSPC1	98	68.687	ENSXMAG00000007929	pspc1	77	77.301	Xiphophorus_maculatus