EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00020002216 (Gene tree)
Gene ID: 112676165
Gene Symbol: LSG1
Alias: FLJ11301
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Canis_lupus_dingo
Status: putative
Strand: Minus strand
Length: 30943 bases
Position: chrQKWQ01000410.1:259166-290108
Accession: 25652
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00020002857	MMR_HSR1	PF01926.23	7.3e-14	1	1
ENSCAFP00020002841	MMR_HSR1	PF01926.23	8.3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00020003281	LSG1-201	1983	-	ENSCAFP00020002841	660 (aa)	-	-
ENSCAFT00020003303	LSG1-202	1872	-	ENSCAFP00020002857	623 (aa)	-	-

Gene Model

Click here to download ENSCAFG00020002216's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00020002216's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00020002216	LSG1	71	30.599	ENSCAFG00020017556	GNL1	65	31.042

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00020002216	LSG1	99	83.788	ENSG00000041802	LSG1	98	87.356	Homo_sapiens
ENSCAFG00020002216	LSG1	99	66.080	ENSAPOG00000009694	lsg1	100	65.158	Acanthochromis_polyacanthus
ENSCAFG00020002216	LSG1	100	87.462	ENSAMEG00000009343	LSG1	100	87.462	Ailuropoda_melanoleuca
ENSCAFG00020002216	LSG1	99	64.320	ENSACIG00000012406	lsg1	100	64.091	Amphilophus_citrinellus
ENSCAFG00020002216	LSG1	99	64.640	ENSAOCG00000016066	lsg1	100	64.608	Amphiprion_ocellaris
ENSCAFG00020002216	LSG1	99	65.760	ENSAPEG00000003252	lsg1	100	63.284	Amphiprion_percula
ENSCAFG00020002216	LSG1	99	63.826	ENSATEG00000011794	lsg1	100	62.351	Anabas_testudineus
ENSCAFG00020002216	LSG1	99	63.694	ENSACAG00000004222	LSG1	99	63.033	Anolis_carolinensis
ENSCAFG00020002216	LSG1	99	84.751	ENSANAG00000021153	LSG1	99	83.661	Aotus_nancymaae
ENSCAFG00020002216	LSG1	100	63.839	ENSACLG00000000520	lsg1	100	63.459	Astatotilapia_calliptera
ENSCAFG00020002216	LSG1	100	63.746	ENSAMXG00000008271	lsg1	100	63.746	Astyanax_mexicanus
ENSCAFG00020002216	LSG1	99	80.417	ENSBTAG00000008461	LSG1	99	81.089	Bos_taurus
ENSCAFG00020002216	LSG1	66	51.000	WBGene00016907	C53H9.2	90	49.065	Caenorhabditis_elegans
ENSCAFG00020002216	LSG1	99	84.430	ENSCJAG00000013962	LSG1	99	83.359	Callithrix_jacchus
ENSCAFG00020002216	LSG1	99	98.558	ENSCAFG00000013445	LSG1	100	98.569	Canis_familiaris
ENSCAFG00020002216	LSG1	100	81.571	ENSCHIG00000015769	LSG1	100	81.571	Capra_hircus
ENSCAFG00020002216	LSG1	99	82.825	ENSTSYG00000001447	LSG1	99	81.997	Carlito_syrichta
ENSCAFG00020002216	LSG1	99	74.601	ENSCAPG00000009856	LSG1	99	74.204	Cavia_aperea
ENSCAFG00020002216	LSG1	99	83.307	ENSCCAG00000035744	LSG1	99	82.300	Cebus_capucinus
ENSCAFG00020002216	LSG1	99	84.430	ENSCATG00000042060	LSG1	99	81.997	Cercocebus_atys
ENSCAFG00020002216	LSG1	99	84.912	ENSCSAG00000008796	LSG1	92	83.812	Chlorocebus_sabaeus
ENSCAFG00020002216	LSG1	99	69.489	ENSCPBG00000015941	LSG1	83	68.373	Chrysemys_picta_bellii
ENSCAFG00020002216	LSG1	66	62.176	ENSCING00000007079	-	91	62.176	Ciona_intestinalis
ENSCAFG00020002216	LSG1	73	59.804	ENSCSAVG00000002514	-	94	55.372	Ciona_savignyi
ENSCAFG00020002216	LSG1	99	84.591	ENSCANG00000030709	LSG1	99	83.207	Colobus_angolensis_palliatus
ENSCAFG00020002216	LSG1	99	81.029	ENSCGRG00001019846	Lsg1	99	80.000	Cricetulus_griseus_chok1gshd
ENSCAFG00020002216	LSG1	99	81.029	ENSCGRG00000014617	Lsg1	99	80.000	Cricetulus_griseus_crigri
ENSCAFG00020002216	LSG1	99	64.377	ENSCSEG00000008522	lsg1	99	63.459	Cynoglossus_semilaevis
ENSCAFG00020002216	LSG1	99	65.072	ENSCVAG00000002484	lsg1	100	65.158	Cyprinodon_variegatus
ENSCAFG00020002216	LSG1	99	66.880	ENSDARG00000015352	lsg1	100	65.460	Danio_rerio
ENSCAFG00020002216	LSG1	99	81.789	ENSDNOG00000006224	LSG1	99	80.271	Dasypus_novemcinctus
ENSCAFG00020002216	LSG1	99	48.408	FBgn0266284	Ns3	99	47.519	Drosophila_melanogaster
ENSCAFG00020002216	LSG1	87	97.297	ENSETEG00000003888	LSG1	84	97.297	Echinops_telfairi
ENSCAFG00020002216	LSG1	94	55.330	ENSEBUG00000003119	lsg1	85	54.243	Eptatretus_burgeri
ENSCAFG00020002216	LSG1	99	85.393	ENSEASG00005000678	LSG1	99	84.418	Equus_asinus_asinus
ENSCAFG00020002216	LSG1	99	85.554	ENSECAG00000017659	LSG1	99	84.418	Equus_caballus
ENSCAFG00020002216	LSG1	87	82.051	ENSEEUG00000015217	LSG1	87	82.051	Erinaceus_europaeus
ENSCAFG00020002216	LSG1	99	62.620	ENSELUG00000023973	lsg1	100	60.994	Esox_lucius
ENSCAFG00020002216	LSG1	99	89.423	ENSFCAG00000024957	LSG1	100	88.369	Felis_catus
ENSCAFG00020002216	LSG1	98	65.528	ENSFALG00000007210	LSG1	94	65.528	Ficedula_albicollis
ENSCAFG00020002216	LSG1	99	77.047	ENSFDAG00000017373	LSG1	99	76.399	Fukomys_damarensis
ENSCAFG00020002216	LSG1	99	64.045	ENSFHEG00000003680	lsg1	99	63.444	Fundulus_heteroclitus
ENSCAFG00020002216	LSG1	82	77.885	ENSGMOG00000015834	lsg1	86	71.888	Gadus_morhua
ENSCAFG00020002216	LSG1	98	63.403	ENSGALG00000007058	LSG1	87	62.930	Gallus_gallus
ENSCAFG00020002216	LSG1	99	64.800	ENSGAFG00000015831	lsg1	99	63.801	Gambusia_affinis
ENSCAFG00020002216	LSG1	99	63.434	ENSGACG00000009323	lsg1	100	61.940	Gasterosteus_aculeatus
ENSCAFG00020002216	LSG1	99	84.430	ENSGGOG00000000520	LSG1	99	83.359	Gorilla_gorilla
ENSCAFG00020002216	LSG1	100	63.348	ENSHBUG00000005659	lsg1	100	63.444	Haplochromis_burtoni
ENSCAFG00020002216	LSG1	99	75.240	ENSHGLG00000017390	LSG1	99	74.661	Heterocephalus_glaber_female
ENSCAFG00020002216	LSG1	99	75.240	ENSHGLG00100018587	LSG1	99	74.661	Heterocephalus_glaber_male
ENSCAFG00020002216	LSG1	99	63.376	ENSHCOG00000016848	lsg1	100	62.219	Hippocampus_comes
ENSCAFG00020002216	LSG1	99	65.756	ENSIPUG00000008631	lsg1	99	64.848	Ictalurus_punctatus
ENSCAFG00020002216	LSG1	80	76.389	ENSSTOG00000010234	LSG1	92	78.571	Ictidomys_tridecemlineatus
ENSCAFG00020002216	LSG1	99	79.677	ENSJJAG00000015513	Lsg1	99	78.116	Jaculus_jaculus
ENSCAFG00020002216	LSG1	99	63.344	ENSKMAG00000009681	lsg1	100	62.273	Kryptolebias_marmoratus
ENSCAFG00020002216	LSG1	99	65.238	ENSLACG00000013399	LSG1	100	64.018	Latimeria_chalumnae
ENSCAFG00020002216	LSG1	99	64.087	ENSLOCG00000004918	lsg1	99	64.768	Lepisosteus_oculatus
ENSCAFG00020002216	LSG1	99	82.665	ENSLAFG00000012919	-	99	81.392	Loxodonta_africana
ENSCAFG00020002216	LSG1	99	84.912	ENSMFAG00000039903	LSG1	99	82.451	Macaca_fascicularis
ENSCAFG00020002216	LSG1	99	84.912	ENSMMUG00000010708	LSG1	99	83.812	Macaca_mulatta
ENSCAFG00020002216	LSG1	99	84.591	ENSMNEG00000031538	LSG1	99	81.997	Macaca_nemestrina
ENSCAFG00020002216	LSG1	99	84.912	ENSMLEG00000041184	LSG1	99	83.812	Mandrillus_leucophaeus
ENSCAFG00020002216	LSG1	100	62.725	ENSMAMG00000000470	lsg1	100	62.033	Mastacembelus_armatus
ENSCAFG00020002216	LSG1	100	63.650	ENSMZEG00005017865	lsg1	100	63.746	Maylandia_zebra
ENSCAFG00020002216	LSG1	94	64.202	ENSMGAG00000007050	LSG1	99	64.915	Meleagris_gallopavo
ENSCAFG00020002216	LSG1	90	79.078	ENSMAUG00000016976	Lsg1	93	78.642	Mesocricetus_auratus
ENSCAFG00020002216	LSG1	99	82.504	ENSMICG00000049087	LSG1	99	81.392	Microcebus_murinus
ENSCAFG00020002216	LSG1	99	78.526	ENSMOCG00000022136	Lsg1	99	77.979	Microtus_ochrogaster
ENSCAFG00020002216	LSG1	84	74.194	ENSMMOG00000008884	lsg1	96	72.368	Mola_mola
ENSCAFG00020002216	LSG1	99	59.003	ENSMODG00000019828	LSG1	99	57.293	Monodelphis_domestica
ENSCAFG00020002216	LSG1	100	77.795	MGP_CAROLIEiJ_G0020648	Lsg1	100	77.795	Mus_caroli
ENSCAFG00020002216	LSG1	100	78.248	ENSMUSG00000022538	Lsg1	100	78.248	Mus_musculus
ENSCAFG00020002216	LSG1	99	79.647	MGP_PahariEiJ_G0016352	Lsg1	100	78.884	Mus_pahari
ENSCAFG00020002216	LSG1	100	78.550	MGP_SPRETEiJ_G0021544	Lsg1	100	78.550	Mus_spretus
ENSCAFG00020002216	LSG1	100	89.124	ENSMPUG00000003734	LSG1	100	89.124	Mustela_putorius_furo
ENSCAFG00020002216	LSG1	99	85.096	ENSMLUG00000012548	LSG1	100	83.837	Myotis_lucifugus
ENSCAFG00020002216	LSG1	99	79.294	ENSNGAG00000021872	Lsg1	99	77.005	Nannospalax_galili
ENSCAFG00020002216	LSG1	99	85.072	ENSNLEG00000008293	LSG1	99	83.964	Nomascus_leucogenys
ENSCAFG00020002216	LSG1	73	71.134	ENSMEUG00000009041	-	82	71.134	Notamacropus_eugenii
ENSCAFG00020002216	LSG1	100	62.463	ENSONIG00000002635	lsg1	100	63.404	Oreochromis_niloticus
ENSCAFG00020002216	LSG1	99	69.874	ENSOANG00000012742	LSG1	99	69.414	Ornithorhynchus_anatinus
ENSCAFG00020002216	LSG1	99	82.183	ENSOCUG00000004817	LSG1	99	81.392	Oryctolagus_cuniculus
ENSCAFG00020002216	LSG1	99	63.666	ENSORLG00000007695	lsg1	100	62.763	Oryzias_latipes
ENSCAFG00020002216	LSG1	99	63.057	ENSORLG00020016286	lsg1	100	61.573	Oryzias_latipes_hni
ENSCAFG00020002216	LSG1	99	63.987	ENSORLG00015012025	lsg1	100	63.485	Oryzias_latipes_hsok
ENSCAFG00020002216	LSG1	99	62.219	ENSOMEG00000022379	lsg1	100	62.048	Oryzias_melastigma
ENSCAFG00020002216	LSG1	99	84.480	ENSOGAG00000003475	LSG1	99	83.107	Otolemur_garnettii
ENSCAFG00020002216	LSG1	100	81.420	ENSOARG00000020403	LSG1	100	81.420	Ovis_aries
ENSCAFG00020002216	LSG1	99	84.270	ENSPPAG00000029271	LSG1	99	83.207	Pan_paniscus
ENSCAFG00020002216	LSG1	99	88.854	ENSPPRG00000010281	LSG1	100	87.838	Panthera_pardus
ENSCAFG00020002216	LSG1	99	89.103	ENSPTIG00000010789	LSG1	100	88.066	Panthera_tigris_altaica
ENSCAFG00020002216	LSG1	99	84.109	ENSPTRG00000015760	LSG1	99	83.056	Pan_troglodytes
ENSCAFG00020002216	LSG1	99	84.430	ENSPANG00000018249	LSG1	99	81.997	Papio_anubis
ENSCAFG00020002216	LSG1	99	64.423	ENSPKIG00000002895	lsg1	99	63.378	Paramormyrops_kingsleyae
ENSCAFG00020002216	LSG1	99	64.196	ENSPSIG00000009821	LSG1	99	63.777	Pelodiscus_sinensis
ENSCAFG00020002216	LSG1	99	64.263	ENSPMGG00000000931	lsg1	100	64.151	Periophthalmus_magnuspinnatus
ENSCAFG00020002216	LSG1	99	78.686	ENSPEMG00000012082	-	99	77.492	Peromyscus_maniculatus_bairdii
ENSCAFG00020002216	LSG1	99	59.591	ENSPMAG00000007451	lsg1	99	58.902	Petromyzon_marinus
ENSCAFG00020002216	LSG1	100	66.492	ENSPCIG00000013890	LSG1	82	66.492	Phascolarctos_cinereus
ENSCAFG00020002216	LSG1	99	65.756	ENSPFOG00000021882	lsg1	99	65.204	Poecilia_formosa
ENSCAFG00020002216	LSG1	99	63.867	ENSPLAG00000019536	lsg1	99	64.448	Poecilia_latipinna
ENSCAFG00020002216	LSG1	99	64.904	ENSPMEG00000017281	lsg1	99	64.404	Poecilia_mexicana
ENSCAFG00020002216	LSG1	99	53.521	ENSPREG00000006048	lsg1	99	54.260	Poecilia_reticulata
ENSCAFG00020002216	LSG1	92	83.246	ENSPPYG00000014425	LSG1	100	82.324	Pongo_abelii
ENSCAFG00020002216	LSG1	89	97.297	ENSPCAG00000005511	LSG1	84	97.297	Procavia_capensis
ENSCAFG00020002216	LSG1	99	83.788	ENSPCOG00000012360	LSG1	99	82.753	Propithecus_coquereli
ENSCAFG00020002216	LSG1	100	63.690	ENSPNYG00000021994	lsg1	100	63.308	Pundamilia_nyererei
ENSCAFG00020002216	LSG1	99	65.660	ENSPNAG00000015533	lsg1	99	64.608	Pygocentrus_nattereri
ENSCAFG00020002216	LSG1	100	78.529	ENSRNOG00000001727	Lsg1	100	78.529	Rattus_norvegicus
ENSCAFG00020002216	LSG1	99	83.628	ENSRBIG00000029053	LSG1	99	82.451	Rhinopithecus_bieti
ENSCAFG00020002216	LSG1	99	83.628	ENSRROG00000037702	LSG1	99	82.451	Rhinopithecus_roxellana
ENSCAFG00020002216	LSG1	65	55.882	YGL099W	LSG1	68	55.882	Saccharomyces_cerevisiae
ENSCAFG00020002216	LSG1	99	85.072	ENSSBOG00000034938	LSG1	99	83.812	Saimiri_boliviensis_boliviensis
ENSCAFG00020002216	LSG1	83	65.655	ENSSHAG00000003487	LSG1	100	64.639	Sarcophilus_harrisii
ENSCAFG00020002216	LSG1	99	64.455	ENSSFOG00015008955	lsg1	100	63.418	Scleropages_formosus
ENSCAFG00020002216	LSG1	99	65.306	ENSSDUG00000004622	lsg1	100	64.137	Seriola_dumerili
ENSCAFG00020002216	LSG1	99	65.176	ENSSLDG00000010869	lsg1	100	64.545	Seriola_lalandi_dorsalis
ENSCAFG00020002216	LSG1	74	90.435	ENSSARG00000012981	LSG1	81	80.290	Sorex_araneus
ENSCAFG00020002216	LSG1	99	67.670	ENSSPUG00000016347	LSG1	100	66.119	Sphenodon_punctatus
ENSCAFG00020002216	LSG1	100	57.549	ENSSPAG00000005508	lsg1	100	63.801	Stegastes_partitus
ENSCAFG00020002216	LSG1	100	81.571	ENSSSCG00000011827	LSG1	100	81.571	Sus_scrofa
ENSCAFG00020002216	LSG1	94	63.926	ENSTGUG00000009068	LSG1	100	62.833	Taeniopygia_guttata
ENSCAFG00020002216	LSG1	99	60.606	ENSTRUG00000017380	lsg1	100	60.150	Takifugu_rubripes
ENSCAFG00020002216	LSG1	99	65.127	ENSTNIG00000015570	lsg1	100	64.565	Tetraodon_nigroviridis
ENSCAFG00020002216	LSG1	100	74.661	ENSTTRG00000000559	LSG1	100	74.661	Tursiops_truncatus
ENSCAFG00020002216	LSG1	100	88.369	ENSUAMG00000012454	LSG1	100	88.369	Ursus_americanus
ENSCAFG00020002216	LSG1	100	88.369	ENSUMAG00000000855	LSG1	100	88.369	Ursus_maritimus
ENSCAFG00020002216	LSG1	99	79.327	ENSVPAG00000012400	LSG1	100	79.491	Vicugna_pacos
ENSCAFG00020002216	LSG1	99	97.588	ENSVVUG00000008956	LSG1	99	96.256	Vulpes_vulpes
ENSCAFG00020002216	LSG1	99	64.547	ENSXETG00000003451	lsg1	99	64.188	Xenopus_tropicalis
ENSCAFG00020002216	LSG1	99	64.526	ENSXCOG00000003239	lsg1	99	63.142	Xiphophorus_couchianus
ENSCAFG00020002216	LSG1	99	63.369	ENSXMAG00000005536	lsg1	99	63.504	Xiphophorus_maculatus