EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00020003511 (Gene tree)
Gene ID: -
Gene Symbol: APOBEC1
Alias: APOBEC-1|BEDP|CDAR1|HEPR
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Canis_lupus_dingo
Status: putative
Strand: Plus strand
Length: 3359 bases
Position: chrQKWQ01000330.1:1488781-1492139
Accession: 604
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00020004249	APOBEC_N	PF08210.11	5.4e-28	1	1
ENSCAFP00020004249	APOBEC_C	PF05240.14	5.6e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00020004913	APOBEC1-201	720	-	ENSCAFP00020004249	239 (aa)	-	-

Gene Model

Click here to download ENSCAFG00020003511's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00020003511's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00020003511	APOBEC1	53	30.159	ENSCAFG00020002661	-	53	30.159
ENSCAFG00020003511	APOBEC1	52	34.615	ENSCAFG00020003515	AICDA	65	34.615

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00020003511	APOBEC1	95	77.434	ENSG00000111701	APOBEC1	96	77.434	Homo_sapiens
ENSCAFG00020003511	APOBEC1	95	87.168	ENSAMEG00000007098	APOBEC1	96	87.168	Ailuropoda_melanoleuca
ENSCAFG00020003511	APOBEC1	71	43.275	ENSACAG00000028578	-	93	43.275	Anolis_carolinensis
ENSCAFG00020003511	APOBEC1	95	76.991	ENSANAG00000027743	APOBEC1	91	76.991	Aotus_nancymaae
ENSCAFG00020003511	APOBEC1	95	73.009	ENSBTAG00000014683	APOBEC1	96	73.009	Bos_taurus
ENSCAFG00020003511	APOBEC1	92	78.281	ENSCJAG00000005398	APOBEC1	100	78.281	Callithrix_jacchus
ENSCAFG00020003511	APOBEC1	95	97.788	ENSCAFG00000013901	APOBEC1	96	97.788	Canis_familiaris
ENSCAFG00020003511	APOBEC1	95	72.566	ENSCHIG00000011898	APOBEC1	94	72.566	Capra_hircus
ENSCAFG00020003511	APOBEC1	56	79.851	ENSTSYG00000029141	APOBEC1	95	79.851	Carlito_syrichta
ENSCAFG00020003511	APOBEC1	90	68.692	ENSCAPG00000015882	-	99	68.692	Cavia_aperea
ENSCAFG00020003511	APOBEC1	98	64.103	ENSCPOG00000033068	APOBEC1	99	64.103	Cavia_porcellus
ENSCAFG00020003511	APOBEC1	95	76.991	ENSCCAG00000022258	APOBEC1	96	76.991	Cebus_capucinus
ENSCAFG00020003511	APOBEC1	95	79.646	ENSCATG00000021613	APOBEC1	91	79.646	Cercocebus_atys
ENSCAFG00020003511	APOBEC1	95	66.079	ENSCLAG00000014645	APOBEC1	99	66.079	Chinchilla_lanigera
ENSCAFG00020003511	APOBEC1	79	80.000	ENSCSAG00000009817	APOBEC1	99	80.000	Chlorocebus_sabaeus
ENSCAFG00020003511	APOBEC1	69	48.521	ENSCPBG00000017398	-	74	48.521	Chrysemys_picta_bellii
ENSCAFG00020003511	APOBEC1	82	47.959	ENSCPBG00000014329	-	54	47.959	Chrysemys_picta_bellii
ENSCAFG00020003511	APOBEC1	71	51.744	ENSCPBG00000014335	-	70	51.744	Chrysemys_picta_bellii
ENSCAFG00020003511	APOBEC1	71	47.093	ENSCPBG00000014331	-	68	50.649	Chrysemys_picta_bellii
ENSCAFG00020003511	APOBEC1	83	46.798	ENSCPBG00000014328	-	89	46.798	Chrysemys_picta_bellii
ENSCAFG00020003511	APOBEC1	84	46.040	ENSCPBG00000014327	-	84	39.631	Chrysemys_picta_bellii
ENSCAFG00020003511	APOBEC1	95	79.204	ENSCANG00000038359	APOBEC1	98	79.204	Colobus_angolensis_palliatus
ENSCAFG00020003511	APOBEC1	96	67.826	ENSCGRG00001011130	Apobec1	99	67.826	Cricetulus_griseus_chok1gshd
ENSCAFG00020003511	APOBEC1	96	67.826	ENSCGRG00000008644	Apobec1	99	67.826	Cricetulus_griseus_crigri
ENSCAFG00020003511	APOBEC1	95	75.221	ENSDNOG00000010926	APOBEC1	96	75.221	Dasypus_novemcinctus
ENSCAFG00020003511	APOBEC1	89	68.224	ENSDORG00000023717	Apobec1	100	68.224	Dipodomys_ordii
ENSCAFG00020003511	APOBEC1	94	73.778	ENSETEG00000004867	APOBEC1	95	73.778	Echinops_telfairi
ENSCAFG00020003511	APOBEC1	95	80.088	ENSEASG00005015951	APOBEC1	95	80.088	Equus_asinus_asinus
ENSCAFG00020003511	APOBEC1	79	81.053	ENSECAG00000017163	APOBEC1	99	81.053	Equus_caballus
ENSCAFG00020003511	APOBEC1	85	53.922	ENSEEUG00000007530	-	97	53.922	Erinaceus_europaeus
ENSCAFG00020003511	APOBEC1	92	65.909	ENSEEUG00000009112	-	98	65.909	Erinaceus_europaeus
ENSCAFG00020003511	APOBEC1	95	82.743	ENSFCAG00000009350	APOBEC1	96	82.743	Felis_catus
ENSCAFG00020003511	APOBEC1	61	46.980	ENSFALG00000007257	-	72	46.980	Ficedula_albicollis
ENSCAFG00020003511	APOBEC1	87	57.971	ENSFDAG00000018470	APOBEC1	99	57.971	Fukomys_damarensis
ENSCAFG00020003511	APOBEC1	85	49.510	ENSGAGG00000011837	-	90	50.838	Gopherus_agassizii
ENSCAFG00020003511	APOBEC1	74	46.369	ENSGAGG00000004947	-	86	50.746	Gopherus_agassizii
ENSCAFG00020003511	APOBEC1	73	42.697	ENSGAGG00000021745	-	66	42.697	Gopherus_agassizii
ENSCAFG00020003511	APOBEC1	82	43.147	ENSGAGG00000021744	-	77	43.147	Gopherus_agassizii
ENSCAFG00020003511	APOBEC1	71	47.953	ENSGAGG00000006624	-	62	47.953	Gopherus_agassizii
ENSCAFG00020003511	APOBEC1	97	61.373	ENSHGLG00000001495	APOBEC1	99	61.373	Heterocephalus_glaber_female
ENSCAFG00020003511	APOBEC1	97	60.944	ENSHGLG00100002187	APOBEC1	99	60.944	Heterocephalus_glaber_male
ENSCAFG00020003511	APOBEC1	90	66.047	ENSSTOG00000021971	APOBEC1	100	83.673	Ictidomys_tridecemlineatus
ENSCAFG00020003511	APOBEC1	92	72.603	ENSJJAG00000022108	Apobec1	96	72.603	Jaculus_jaculus
ENSCAFG00020003511	APOBEC1	93	78.027	ENSLAFG00000030837	APOBEC1	100	78.027	Loxodonta_africana
ENSCAFG00020003511	APOBEC1	95	79.204	ENSMFAG00000000277	APOBEC1	99	80.526	Macaca_fascicularis
ENSCAFG00020003511	APOBEC1	95	78.761	ENSMNEG00000029670	APOBEC1	96	78.761	Macaca_nemestrina
ENSCAFG00020003511	APOBEC1	95	79.646	ENSMLEG00000036301	APOBEC1	96	79.646	Mandrillus_leucophaeus
ENSCAFG00020003511	APOBEC1	95	69.027	ENSMAUG00000022167	Apobec1	99	69.027	Mesocricetus_auratus
ENSCAFG00020003511	APOBEC1	95	77.876	ENSMICG00000043645	APOBEC1	96	79.186	Microcebus_murinus
ENSCAFG00020003511	APOBEC1	95	65.487	ENSMODG00000018004	APOBEC1	96	65.487	Monodelphis_domestica
ENSCAFG00020003511	APOBEC1	91	70.642	ENSMUSG00000040613	Apobec1	95	70.642	Mus_musculus
ENSCAFG00020003511	APOBEC1	91	68.349	MGP_PahariEiJ_G0022580	-	95	68.349	Mus_pahari
ENSCAFG00020003511	APOBEC1	91	70.642	MGP_SPRETEiJ_G0029857	Apobec1	95	70.642	Mus_spretus
ENSCAFG00020003511	APOBEC1	95	83.186	ENSMPUG00000017532	APOBEC1	96	83.186	Mustela_putorius_furo
ENSCAFG00020003511	APOBEC1	92	72.146	ENSNGAG00000022607	Apobec1	96	72.146	Nannospalax_galili
ENSCAFG00020003511	APOBEC1	95	78.319	ENSNLEG00000005342	APOBEC1	96	78.319	Nomascus_leucogenys
ENSCAFG00020003511	APOBEC1	95	63.717	ENSMEUG00000013406	APOBEC1	96	63.717	Notamacropus_eugenii
ENSCAFG00020003511	APOBEC1	75	62.011	ENSOPRG00000009508	-	99	62.011	Ochotona_princeps
ENSCAFG00020003511	APOBEC1	95	72.124	ENSOCUG00000025736	APOBEC1	85	72.124	Oryctolagus_cuniculus
ENSCAFG00020003511	APOBEC1	95	77.876	ENSOGAG00000026415	APOBEC1	96	77.876	Otolemur_garnettii
ENSCAFG00020003511	APOBEC1	95	72.124	ENSOARG00000002072	APOBEC1	95	72.124	Ovis_aries
ENSCAFG00020003511	APOBEC1	95	72.124	ENSPPAG00000027657	APOBEC1	95	72.124	Pan_paniscus
ENSCAFG00020003511	APOBEC1	95	83.186	ENSPPRG00000012182	APOBEC1	96	83.186	Panthera_pardus
ENSCAFG00020003511	APOBEC1	95	83.186	ENSPTIG00000020280	APOBEC1	96	83.186	Panthera_tigris_altaica
ENSCAFG00020003511	APOBEC1	95	77.876	ENSPTRG00000004614	APOBEC1	96	77.876	Pan_troglodytes
ENSCAFG00020003511	APOBEC1	95	80.088	ENSPANG00000021027	APOBEC1	96	80.088	Papio_anubis
ENSCAFG00020003511	APOBEC1	72	48.276	ENSPSIG00000012568	-	75	48.276	Pelodiscus_sinensis
ENSCAFG00020003511	APOBEC1	56	50.450	ENSPSIG00000012791	-	75	50.450	Pelodiscus_sinensis
ENSCAFG00020003511	APOBEC1	95	68.421	ENSPEMG00000023841	Apobec1	99	68.421	Peromyscus_maniculatus_bairdii
ENSCAFG00020003511	APOBEC1	95	67.257	ENSPCIG00000023973	APOBEC1	96	67.257	Phascolarctos_cinereus
ENSCAFG00020003511	APOBEC1	95	76.991	ENSPPYG00000004228	APOBEC1	91	76.991	Pongo_abelii
ENSCAFG00020003511	APOBEC1	74	77.401	ENSPCAG00000008733	APOBEC1	95	77.401	Procavia_capensis
ENSCAFG00020003511	APOBEC1	92	80.543	ENSPCOG00000013957	APOBEC1	98	80.543	Propithecus_coquereli
ENSCAFG00020003511	APOBEC1	95	61.504	ENSPVAG00000010709	APOBEC1	96	61.504	Pteropus_vampyrus
ENSCAFG00020003511	APOBEC1	91	68.807	ENSRNOG00000015411	Apobec1	95	68.807	Rattus_norvegicus
ENSCAFG00020003511	APOBEC1	95	79.646	ENSRBIG00000031161	APOBEC1	96	79.646	Rhinopithecus_bieti
ENSCAFG00020003511	APOBEC1	95	79.646	ENSRROG00000033576	APOBEC1	99	81.053	Rhinopithecus_roxellana
ENSCAFG00020003511	APOBEC1	72	79.651	ENSSBOG00000030587	APOBEC1	97	79.651	Saimiri_boliviensis_boliviensis
ENSCAFG00020003511	APOBEC1	95	66.814	ENSSHAG00000008925	APOBEC1	99	66.814	Sarcophilus_harrisii
ENSCAFG00020003511	APOBEC1	72	68.023	ENSSARG00000000032	-	100	68.023	Sorex_araneus
ENSCAFG00020003511	APOBEC1	55	71.970	ENSSARG00000011972	-	100	71.970	Sorex_araneus
ENSCAFG00020003511	APOBEC1	83	44.608	ENSSPUG00000009044	-	77	44.608	Sphenodon_punctatus
ENSCAFG00020003511	APOBEC1	95	77.876	ENSSSCG00000000668	APOBEC1	96	77.876	Sus_scrofa
ENSCAFG00020003511	APOBEC1	60	50.694	ENSTGUG00000013118	-	99	50.694	Taeniopygia_guttata
ENSCAFG00020003511	APOBEC1	92	75.566	ENSTBEG00000010043	APOBEC1	94	75.566	Tupaia_belangeri
ENSCAFG00020003511	APOBEC1	74	73.446	ENSTTRG00000014015	APOBEC1	95	73.446	Tursiops_truncatus
ENSCAFG00020003511	APOBEC1	95	86.283	ENSUAMG00000011636	APOBEC1	93	86.283	Ursus_americanus
ENSCAFG00020003511	APOBEC1	95	86.283	ENSUMAG00000016552	APOBEC1	93	86.283	Ursus_maritimus
ENSCAFG00020003511	APOBEC1	95	73.009	ENSVPAG00000001343	APOBEC1	96	73.009	Vicugna_pacos
ENSCAFG00020003511	APOBEC1	95	96.903	ENSVVUG00000010522	APOBEC1	96	96.903	Vulpes_vulpes