EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCAFG00020005882 (Gene tree)
Gene ID: 112658809
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Canis_lupus_dingo
Status: putative
Strand: Minus strand
Length: 88711 bases
Position: chrQKWQ01000669.1:15823719-15912429
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00020007590	Upf2	PF04050.14	1.2e-32	1	1
ENSCAFP00020007579	Upf2	PF04050.14	1.2e-32	1	1
ENSCAFP00020007567	Upf2	PF04050.14	1.3e-32	1	1
ENSCAFP00020007584	Upf2	PF04050.14	2.5e-32	1	1
ENSCAFP00020007619	MIF4G	PF02854.19	2.5e-76	1	3
ENSCAFP00020007619	MIF4G	PF02854.19	2.5e-76	2	3
ENSCAFP00020007619	MIF4G	PF02854.19	2.5e-76	3	3
ENSCAFP00020007623	MIF4G	PF02854.19	2.5e-76	1	3
ENSCAFP00020007623	MIF4G	PF02854.19	2.5e-76	2	3
ENSCAFP00020007623	MIF4G	PF02854.19	2.5e-76	3	3
ENSCAFP00020007584	MIF4G	PF02854.19	7.1e-76	1	3
ENSCAFP00020007584	MIF4G	PF02854.19	7.1e-76	2	3
ENSCAFP00020007584	MIF4G	PF02854.19	7.1e-76	3	3
ENSCAFP00020007590	MIF4G	PF02854.19	8.6e-76	1	3
ENSCAFP00020007590	MIF4G	PF02854.19	8.6e-76	2	3
ENSCAFP00020007590	MIF4G	PF02854.19	8.6e-76	3	3
ENSCAFP00020007567	MIF4G	PF02854.19	9.6e-76	1	3
ENSCAFP00020007567	MIF4G	PF02854.19	9.6e-76	2	3
ENSCAFP00020007567	MIF4G	PF02854.19	9.6e-76	3	3
ENSCAFP00020007579	MIF4G	PF02854.19	4.4e-70	1	3
ENSCAFP00020007579	MIF4G	PF02854.19	4.4e-70	2	3
ENSCAFP00020007579	MIF4G	PF02854.19	4.4e-70	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00020008773	UPF2-203	3642	-	ENSCAFP00020007584	1213 (aa)	-	-
ENSCAFT00020008779	UPF2-204	3633	-	ENSCAFP00020007590	1210 (aa)	-	-
ENSCAFT00020008768	UPF2-202	3651	-	ENSCAFP00020007579	1216 (aa)	-	-
ENSCAFT00020008816	UPF2-205	3108	-	ENSCAFP00020007619	1035 (aa)	-	-
ENSCAFT00020008821	UPF2-206	3102	-	ENSCAFP00020007623	1033 (aa)	-	-
ENSCAFT00020008755	UPF2-201	3756	-	ENSCAFP00020007567	1251 (aa)	-	-

Gene Model

Click here to download ENSCAFG00020005882's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00020005882's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00020005882	UPF2	100	95.276	ENSG00000151461	UPF2	99	95.276	Homo_sapiens
ENSCAFG00020005882	UPF2	100	79.968	ENSAPOG00000015837	UPF2	100	79.888	Acanthochromis_polyacanthus
ENSCAFG00020005882	UPF2	98	99.407	ENSAMEG00000004586	UPF2	99	97.163	Ailuropoda_melanoleuca
ENSCAFG00020005882	UPF2	99	87.755	ENSACIG00000018078	UPF2	95	87.245	Amphilophus_citrinellus
ENSCAFG00020005882	UPF2	99	86.869	ENSAOCG00000016766	UPF2	100	82.203	Amphiprion_ocellaris
ENSCAFG00020005882	UPF2	99	86.869	ENSAPEG00000019084	UPF2	100	82.283	Amphiprion_percula
ENSCAFG00020005882	UPF2	99	87.000	ENSATEG00000021677	UPF2	94	86.364	Anabas_testudineus
ENSCAFG00020005882	UPF2	100	86.842	ENSAPLG00000010287	UPF2	90	91.792	Anas_platyrhynchos
ENSCAFG00020005882	UPF2	100	90.307	ENSACAG00000009259	UPF2	97	97.044	Anolis_carolinensis
ENSCAFG00020005882	UPF2	100	99.482	ENSANAG00000028451	UPF2	96	99.490	Aotus_nancymaae
ENSCAFG00020005882	UPF2	99	87.755	ENSACLG00000012696	UPF2	95	86.735	Astatotilapia_calliptera
ENSCAFG00020005882	UPF2	100	87.755	ENSAMXG00000013700	UPF2	94	87.310	Astyanax_mexicanus
ENSCAFG00020005882	UPF2	98	98.714	ENSBTAG00000000288	UPF2	99	96.690	Bos_taurus
ENSCAFG00020005882	UPF2	100	96.885	ENSCJAG00000020685	UPF2	99	96.885	Callithrix_jacchus
ENSCAFG00020005882	UPF2	98	99.802	ENSCAFG00000004839	UPF2	99	97.557	Canis_familiaris
ENSCAFG00020005882	UPF2	98	98.813	ENSCHIG00000020359	UPF2	99	96.769	Capra_hircus
ENSCAFG00020005882	UPF2	100	99.482	ENSTSYG00000000935	UPF2	97	99.507	Carlito_syrichta
ENSCAFG00020005882	UPF2	87	89.823	ENSCAPG00000016658	UPF2	94	84.469	Cavia_aperea
ENSCAFG00020005882	UPF2	99	92.784	ENSCPOG00000008809	UPF2	99	93.101	Cavia_porcellus
ENSCAFG00020005882	UPF2	100	89.936	ENSCCAG00000035991	UPF2	99	90.736	Cebus_capucinus
ENSCAFG00020005882	UPF2	100	96.355	ENSCATG00000032679	UPF2	100	96.355	Cercocebus_atys
ENSCAFG00020005882	UPF2	100	95.429	ENSCLAG00000011434	UPF2	99	95.429	Chinchilla_lanigera
ENSCAFG00020005882	UPF2	100	95.512	ENSCSAG00000013372	UPF2	99	95.512	Chlorocebus_sabaeus
ENSCAFG00020005882	UPF2	89	98.438	ENSCHOG00000000422	UPF2	89	98.661	Choloepus_hoffmanni
ENSCAFG00020005882	UPF2	100	98.469	ENSCPBG00000027823	UPF2	97	98.522	Chrysemys_picta_bellii
ENSCAFG00020005882	UPF2	79	47.671	ENSCSAVG00000007772	-	91	52.444	Ciona_savignyi
ENSCAFG00020005882	UPF2	98	97.134	ENSCANG00000040396	UPF2	100	93.191	Colobus_angolensis_palliatus
ENSCAFG00020005882	UPF2	100	95.978	ENSCGRG00001019347	Upf2	99	95.978	Cricetulus_griseus_chok1gshd
ENSCAFG00020005882	UPF2	100	95.978	ENSCGRG00000017993	Upf2	99	95.978	Cricetulus_griseus_crigri
ENSCAFG00020005882	UPF2	90	81.914	ENSCSEG00000003520	UPF2	91	81.524	Cynoglossus_semilaevis
ENSCAFG00020005882	UPF2	97	83.813	ENSCVAG00000006167	UPF2	95	85.859	Cyprinodon_variegatus
ENSCAFG00020005882	UPF2	98	98.615	ENSDNOG00000018160	UPF2	99	96.375	Dasypus_novemcinctus
ENSCAFG00020005882	UPF2	98	97.923	ENSDORG00000002478	Upf2	99	95.662	Dipodomys_ordii
ENSCAFG00020005882	UPF2	89	36.257	FBgn0029992	Upf2	82	43.750	Drosophila_melanogaster
ENSCAFG00020005882	UPF2	70	100.000	ENSETEG00000011583	-	63	100.000	Echinops_telfairi
ENSCAFG00020005882	UPF2	72	68.657	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSCAFG00020005882	UPF2	98	98.318	ENSEASG00005019274	UPF2	99	98.483	Equus_asinus_asinus
ENSCAFG00020005882	UPF2	98	98.417	ENSECAG00000017022	UPF2	99	96.375	Equus_caballus
ENSCAFG00020005882	UPF2	81	96.923	ENSEEUG00000007819	UPF2	78	97.044	Erinaceus_europaeus
ENSCAFG00020005882	UPF2	99	88.384	ENSELUG00000012014	UPF2	95	87.374	Esox_lucius
ENSCAFG00020005882	UPF2	100	98.883	ENSFCAG00000005785	UPF2	97	99.507	Felis_catus
ENSCAFG00020005882	UPF2	98	93.472	ENSFALG00000001889	UPF2	98	91.883	Ficedula_albicollis
ENSCAFG00020005882	UPF2	100	95.189	ENSFDAG00000014348	UPF2	99	95.189	Fukomys_damarensis
ENSCAFG00020005882	UPF2	99	81.602	ENSFHEG00000009826	UPF2	94	86.364	Fundulus_heteroclitus
ENSCAFG00020005882	UPF2	88	86.096	ENSGMOG00000005557	UPF2	91	82.282	Gadus_morhua
ENSCAFG00020005882	UPF2	98	93.577	ENSGALG00000033772	UPF2	99	92.047	Gallus_gallus
ENSCAFG00020005882	UPF2	100	77.891	ENSGAFG00000020867	UPF2	95	86.869	Gambusia_affinis
ENSCAFG00020005882	UPF2	90	82.140	ENSGACG00000001080	UPF2	95	86.364	Gasterosteus_aculeatus
ENSCAFG00020005882	UPF2	100	97.449	ENSGAGG00000002700	UPF2	97	97.537	Gopherus_agassizii
ENSCAFG00020005882	UPF2	100	96.197	ENSGGOG00000001479	UPF2	100	96.197	Gorilla_gorilla
ENSCAFG00020005882	UPF2	99	87.755	ENSHBUG00000004249	UPF2	95	86.735	Haplochromis_burtoni
ENSCAFG00020005882	UPF2	100	95.508	ENSHGLG00000015176	-	99	95.508	Heterocephalus_glaber_female
ENSCAFG00020005882	UPF2	100	93.782	ENSHGLG00000003822	-	96	93.878	Heterocephalus_glaber_female
ENSCAFG00020005882	UPF2	100	91.719	ENSHGLG00100010036	UPF2	89	95.863	Heterocephalus_glaber_male
ENSCAFG00020005882	UPF2	98	81.213	ENSHCOG00000004025	UPF2	94	86.364	Hippocampus_comes
ENSCAFG00020005882	UPF2	98	82.891	ENSIPUG00000015524	UPF2	95	86.735	Ictalurus_punctatus
ENSCAFG00020005882	UPF2	100	99.490	ENSSTOG00000013075	UPF2	97	99.507	Ictidomys_tridecemlineatus
ENSCAFG00020005882	UPF2	100	96.939	ENSJJAG00000004913	Upf2	97	97.044	Jaculus_jaculus
ENSCAFG00020005882	UPF2	98	81.415	ENSKMAG00000001071	UPF2	94	86.364	Kryptolebias_marmoratus
ENSCAFG00020005882	UPF2	87	85.825	ENSLBEG00000000728	-	93	83.202	Labrus_bergylta
ENSCAFG00020005882	UPF2	100	84.172	ENSLBEG00000016394	-	100	84.472	Labrus_bergylta
ENSCAFG00020005882	UPF2	99	85.500	ENSLACG00000015945	UPF2	95	88.083	Latimeria_chalumnae
ENSCAFG00020005882	UPF2	99	91.371	ENSLOCG00000015698	UPF2	95	91.371	Lepisosteus_oculatus
ENSCAFG00020005882	UPF2	100	96.574	ENSMFAG00000043865	UPF2	100	96.574	Macaca_fascicularis
ENSCAFG00020005882	UPF2	100	95.354	ENSMMUG00000008241	UPF2	99	95.354	Macaca_mulatta
ENSCAFG00020005882	UPF2	98	97.134	ENSMNEG00000008062	UPF2	100	97.073	Macaca_nemestrina
ENSCAFG00020005882	UPF2	100	96.355	ENSMLEG00000036120	UPF2	100	96.355	Mandrillus_leucophaeus
ENSCAFG00020005882	UPF2	99	86.500	ENSMAMG00000018276	UPF2	100	82.654	Mastacembelus_armatus
ENSCAFG00020005882	UPF2	99	87.755	ENSMZEG00005021595	UPF2	95	86.735	Maylandia_zebra
ENSCAFG00020005882	UPF2	98	92.885	ENSMGAG00000004573	UPF2	99	91.489	Meleagris_gallopavo
ENSCAFG00020005882	UPF2	100	93.612	ENSMAUG00000016512	Upf2	99	93.612	Mesocricetus_auratus
ENSCAFG00020005882	UPF2	100	97.774	ENSMICG00000001716	UPF2	100	97.774	Microcebus_murinus
ENSCAFG00020005882	UPF2	98	97.033	ENSMOCG00000008263	Upf2	97	99.507	Microtus_ochrogaster
ENSCAFG00020005882	UPF2	90	84.946	ENSMMOG00000006528	UPF2	100	80.738	Mola_mola
ENSCAFG00020005882	UPF2	98	95.846	ENSMODG00000016794	UPF2	99	94.090	Monodelphis_domestica
ENSCAFG00020005882	UPF2	98	83.988	ENSMALG00000002663	UPF2	100	81.300	Monopterus_albus
ENSCAFG00020005882	UPF2	100	95.268	MGP_CAROLIEiJ_G0023157	Upf2	99	95.797	Mus_caroli
ENSCAFG00020005882	UPF2	100	95.584	ENSMUSG00000043241	Upf2	99	95.584	Mus_musculus
ENSCAFG00020005882	UPF2	100	95.189	MGP_PahariEiJ_G0019217	Upf2	97	99.507	Mus_pahari
ENSCAFG00020005882	UPF2	100	95.820	MGP_SPRETEiJ_G0024075	Upf2	99	95.820	Mus_spretus
ENSCAFG00020005882	UPF2	98	99.110	ENSMPUG00000001064	UPF2	99	96.927	Mustela_putorius_furo
ENSCAFG00020005882	UPF2	98	97.931	ENSMLUG00000000228	UPF2	100	95.915	Myotis_lucifugus
ENSCAFG00020005882	UPF2	99	87.755	ENSNBRG00000013629	UPF2	95	86.735	Neolamprologus_brichardi
ENSCAFG00020005882	UPF2	100	96.725	ENSNLEG00000012058	UPF2	100	96.725	Nomascus_leucogenys
ENSCAFG00020005882	UPF2	58	97.409	ENSMEUG00000002180	-	54	97.409	Notamacropus_eugenii
ENSCAFG00020005882	UPF2	82	100.000	ENSOPRG00000006801	-	82	100.000	Ochotona_princeps
ENSCAFG00020005882	UPF2	98	97.329	ENSODEG00000001290	UPF2	99	94.563	Octodon_degus
ENSCAFG00020005882	UPF2	99	88.265	ENSONIG00000017991	UPF2	95	87.245	Oreochromis_niloticus
ENSCAFG00020005882	UPF2	100	98.446	ENSOCUG00000006230	UPF2	97	98.522	Oryctolagus_cuniculus
ENSCAFG00020005882	UPF2	100	85.075	ENSORLG00000017189	UPF2	95	85.354	Oryzias_latipes
ENSCAFG00020005882	UPF2	98	82.776	ENSORLG00020005969	UPF2	99	78.359	Oryzias_latipes_hni
ENSCAFG00020005882	UPF2	98	82.776	ENSORLG00015005713	UPF2	99	78.359	Oryzias_latipes_hsok
ENSCAFG00020005882	UPF2	100	85.572	ENSOMEG00000023420	UPF2	98	77.326	Oryzias_melastigma
ENSCAFG00020005882	UPF2	100	95.351	ENSOGAG00000005796	UPF2	99	95.351	Otolemur_garnettii
ENSCAFG00020005882	UPF2	100	96.617	ENSOARG00000014587	UPF2	99	96.617	Ovis_aries
ENSCAFG00020005882	UPF2	100	95.563	ENSPPAG00000037953	UPF2	100	95.563	Pan_paniscus
ENSCAFG00020005882	UPF2	98	99.308	ENSPPRG00000000690	UPF2	97	99.507	Panthera_pardus
ENSCAFG00020005882	UPF2	98	99.308	ENSPTIG00000008867	UPF2	97	99.507	Panthera_tigris_altaica
ENSCAFG00020005882	UPF2	100	96.197	ENSPTRG00000002291	UPF2	100	96.197	Pan_troglodytes
ENSCAFG00020005882	UPF2	100	96.276	ENSPANG00000023399	UPF2	100	96.276	Papio_anubis
ENSCAFG00020005882	UPF2	99	86.735	ENSPKIG00000025502	UPF2	95	86.765	Paramormyrops_kingsleyae
ENSCAFG00020005882	UPF2	73	92.297	ENSPSIG00000015158	UPF2	95	92.563	Pelodiscus_sinensis
ENSCAFG00020005882	UPF2	98	80.731	ENSPMGG00000005259	UPF2	100	78.408	Periophthalmus_magnuspinnatus
ENSCAFG00020005882	UPF2	93	96.210	ENSPEMG00000015731	Upf2	99	96.210	Peromyscus_maniculatus_bairdii
ENSCAFG00020005882	UPF2	98	95.648	ENSPCIG00000006656	UPF2	100	93.775	Phascolarctos_cinereus
ENSCAFG00020005882	UPF2	98	80.039	ENSPFOG00000017118	UPF2	95	86.364	Poecilia_formosa
ENSCAFG00020005882	UPF2	98	80.039	ENSPLAG00000005094	UPF2	95	86.364	Poecilia_latipinna
ENSCAFG00020005882	UPF2	98	80.039	ENSPMEG00000017009	UPF2	95	86.364	Poecilia_mexicana
ENSCAFG00020005882	UPF2	98	80.334	ENSPREG00000021880	UPF2	95	86.364	Poecilia_reticulata
ENSCAFG00020005882	UPF2	65	95.204	ENSPPYG00000002089	-	99	95.204	Pongo_abelii
ENSCAFG00020005882	UPF2	100	99.482	ENSPCAG00000000684	UPF2	96	99.507	Procavia_capensis
ENSCAFG00020005882	UPF2	100	96.403	ENSPCOG00000021656	UPF2	100	96.403	Propithecus_coquereli
ENSCAFG00020005882	UPF2	100	88.976	ENSPVAG00000017286	UPF2	99	88.976	Pteropus_vampyrus
ENSCAFG00020005882	UPF2	99	87.755	ENSPNYG00000017096	UPF2	95	86.735	Pundamilia_nyererei
ENSCAFG00020005882	UPF2	99	88.776	ENSPNAG00000009357	UPF2	95	88.325	Pygocentrus_nattereri
ENSCAFG00020005882	UPF2	98	93.978	ENSRNOG00000023593	Upf2	98	100.000	Rattus_norvegicus
ENSCAFG00020005882	UPF2	100	95.321	ENSRBIG00000037780	UPF2	100	95.321	Rhinopithecus_bieti
ENSCAFG00020005882	UPF2	100	96.355	ENSRROG00000043547	UPF2	100	96.355	Rhinopithecus_roxellana
ENSCAFG00020005882	UPF2	100	96.166	ENSSBOG00000020012	UPF2	99	96.166	Saimiri_boliviensis_boliviensis
ENSCAFG00020005882	UPF2	100	79.703	ENSSFOG00015023788	upf2	95	88.325	Scleropages_formosus
ENSCAFG00020005882	UPF2	90	80.833	ENSSMAG00000007637	UPF2	95	85.572	Scophthalmus_maximus
ENSCAFG00020005882	UPF2	100	83.239	ENSSDUG00000017244	UPF2	100	83.887	Seriola_dumerili
ENSCAFG00020005882	UPF2	100	82.892	ENSSLDG00000016866	UPF2	100	83.213	Seriola_lalandi_dorsalis
ENSCAFG00020005882	UPF2	98	95.945	ENSSARG00000008615	UPF2	96	99.015	Sorex_araneus
ENSCAFG00020005882	UPF2	100	96.939	ENSSPUG00000014544	UPF2	95	97.044	Sphenodon_punctatus
ENSCAFG00020005882	UPF2	68	95.386	ENSSSCG00000011117	-	99	95.386	Sus_scrofa
ENSCAFG00020005882	UPF2	99	97.938	ENSTGUG00000002163	-	97	98.020	Taeniopygia_guttata
ENSCAFG00020005882	UPF2	100	84.500	ENSTRUG00000007519	UPF2	94	84.848	Takifugu_rubripes
ENSCAFG00020005882	UPF2	100	84.729	ENSTNIG00000004453	UPF2	94	80.703	Tetraodon_nigroviridis
ENSCAFG00020005882	UPF2	93	100.000	ENSTBEG00000012679	UPF2	90	100.000	Tupaia_belangeri
ENSCAFG00020005882	UPF2	100	96.375	ENSTTRG00000016388	UPF2	99	96.375	Tursiops_truncatus
ENSCAFG00020005882	UPF2	100	97.391	ENSUAMG00000023560	UPF2	100	100.000	Ursus_americanus
ENSCAFG00020005882	UPF2	98	99.308	ENSUMAG00000012953	UPF2	95	97.084	Ursus_maritimus
ENSCAFG00020005882	UPF2	98	94.955	ENSVPAG00000006763	UPF2	86	96.774	Vicugna_pacos
ENSCAFG00020005882	UPF2	98	99.703	ENSVVUG00000006166	UPF2	99	97.478	Vulpes_vulpes
ENSCAFG00020005882	UPF2	100	82.812	ENSXETG00000033103	UPF2	94	92.614	Xenopus_tropicalis
ENSCAFG00020005882	UPF2	92	82.338	ENSXCOG00000011604	UPF2	95	86.364	Xiphophorus_couchianus
ENSCAFG00020005882	UPF2	92	82.650	ENSXMAG00000017209	UPF2	95	86.364	Xiphophorus_maculatus