EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCAFG00020006061 (Gene tree)
Gene ID: 112648898
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Canis_lupus_dingo
Status: putative
Strand: Plus strand
Length: 25903 bases
Position: chrQKWQ01001577.1:38563485-38589387
Accession: 112648898
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00020007495	EST1	PF10374.9	1.2e-23	1	1
ENSCAFP00020007495	EST1_DNA_bind	PF10373.9	2e-40	1	2
ENSCAFP00020007495	EST1_DNA_bind	PF10373.9	2e-40	2	2
ENSCAFP00020007495	PIN_4	PF13638.6	3.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00020008676	SMG5-201	3804	-	ENSCAFP00020007495	1011 (aa)	XP_025286634	UPI00023ADF2D

Gene Model

Click here to download ENSCAFG00020006061's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00020006061's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00020006061	SMG5	100	93.996	ENSG00000198952	SMG5	100	94.587	Homo_sapiens
ENSCAFG00020006061	SMG5	99	67.426	ENSAPOG00000019690	smg5	93	77.176	Acanthochromis_polyacanthus
ENSCAFG00020006061	SMG5	98	95.267	ENSAMEG00000014458	SMG5	100	95.267	Ailuropoda_melanoleuca
ENSCAFG00020006061	SMG5	99	64.603	ENSACIG00000001353	smg5	99	65.377	Amphilophus_citrinellus
ENSCAFG00020006061	SMG5	98	64.653	ENSAOCG00000019483	smg5	96	64.975	Amphiprion_ocellaris
ENSCAFG00020006061	SMG5	98	66.434	ENSAPEG00000022949	smg5	98	66.199	Amphiprion_percula
ENSCAFG00020006061	SMG5	99	66.021	ENSATEG00000005348	smg5	99	66.667	Anabas_testudineus
ENSCAFG00020006061	SMG5	98	77.756	ENSAPLG00000010263	SMG5	100	77.756	Anas_platyrhynchos
ENSCAFG00020006061	SMG5	100	93.504	ENSANAG00000032899	SMG5	100	94.193	Aotus_nancymaae
ENSCAFG00020006061	SMG5	99	64.888	ENSACLG00000009311	smg5	99	65.141	Astatotilapia_calliptera
ENSCAFG00020006061	SMG5	51	59.444	ENSAMXG00000024616	smg5	99	62.976	Astyanax_mexicanus
ENSCAFG00020006061	SMG5	99	43.992	ENSBTAG00000021747	-	99	43.440	Bos_taurus
ENSCAFG00020006061	SMG5	100	93.209	ENSBTAG00000009435	SMG5	100	94.390	Bos_taurus
ENSCAFG00020006061	SMG5	100	93.701	ENSCJAG00000005684	SMG5	100	94.390	Callithrix_jacchus
ENSCAFG00020006061	SMG5	100	100.000	ENSCAFG00000016839	SMG5	100	100.000	Canis_familiaris
ENSCAFG00020006061	SMG5	99	44.236	ENSCHIG00000006323	-	99	44.236	Capra_hircus
ENSCAFG00020006061	SMG5	100	93.996	ENSCHIG00000007709	SMG5	100	93.996	Capra_hircus
ENSCAFG00020006061	SMG5	100	94.297	ENSTSYG00000004099	SMG5	100	94.297	Carlito_syrichta
ENSCAFG00020006061	SMG5	97	71.400	ENSCAPG00000003631	SMG5	100	72.604	Cavia_aperea
ENSCAFG00020006061	SMG5	100	92.436	ENSCPOG00000015696	SMG5	100	92.731	Cavia_porcellus
ENSCAFG00020006061	SMG5	100	93.602	ENSCCAG00000027409	SMG5	100	94.291	Cebus_capucinus
ENSCAFG00020006061	SMG5	100	93.898	ENSCATG00000030539	SMG5	100	94.685	Cercocebus_atys
ENSCAFG00020006061	SMG5	100	93.124	ENSCLAG00000003983	SMG5	100	93.615	Chinchilla_lanigera
ENSCAFG00020006061	SMG5	100	93.799	ENSCSAG00000002120	SMG5	100	94.587	Chlorocebus_sabaeus
ENSCAFG00020006061	SMG5	55	88.321	ENSCHOG00000008741	-	57	88.321	Choloepus_hoffmanni
ENSCAFG00020006061	SMG5	93	76.471	ENSCPBG00000025848	SMG5	100	77.181	Chrysemys_picta_bellii
ENSCAFG00020006061	SMG5	93	34.809	ENSCING00000008706	-	99	34.116	Ciona_intestinalis
ENSCAFG00020006061	SMG5	100	89.961	ENSCANG00000029208	SMG5	100	90.945	Colobus_angolensis_palliatus
ENSCAFG00020006061	SMG5	100	90.855	ENSCGRG00001006336	Smg5	100	90.462	Cricetulus_griseus_chok1gshd
ENSCAFG00020006061	SMG5	98	90.735	ENSCGRG00000005111	Smg5	100	90.323	Cricetulus_griseus_crigri
ENSCAFG00020006061	SMG5	92	77.381	ENSCSEG00000014220	smg5	99	64.990	Cynoglossus_semilaevis
ENSCAFG00020006061	SMG5	99	60.648	ENSCVAG00000000529	smg5	99	60.314	Cyprinodon_variegatus
ENSCAFG00020006061	SMG5	52	59.601	ENSDARG00000041481	smg5	99	62.443	Danio_rerio
ENSCAFG00020006061	SMG5	92	36.422	ENSDNOG00000039862	-	100	35.207	Dasypus_novemcinctus
ENSCAFG00020006061	SMG5	100	89.567	ENSDNOG00000000051	SMG5	100	90.275	Dasypus_novemcinctus
ENSCAFG00020006061	SMG5	100	91.364	ENSDORG00000010382	Smg5	100	91.642	Dipodomys_ordii
ENSCAFG00020006061	SMG5	68	35.256	FBgn0019890	Smg5	62	35.256	Drosophila_melanogaster
ENSCAFG00020006061	SMG5	82	97.087	ENSETEG00000010336	SMG5	89	97.087	Echinops_telfairi
ENSCAFG00020006061	SMG5	90	47.761	ENSEBUG00000003739	smg5	98	47.071	Eptatretus_burgeri
ENSCAFG00020006061	SMG5	100	94.685	ENSEASG00005019122	SMG5	100	94.685	Equus_asinus_asinus
ENSCAFG00020006061	SMG5	100	94.685	ENSECAG00000001389	SMG5	100	94.685	Equus_caballus
ENSCAFG00020006061	SMG5	72	97.118	ENSEEUG00000012690	SMG5	73	97.118	Erinaceus_europaeus
ENSCAFG00020006061	SMG5	99	65.370	ENSELUG00000012585	smg5	99	65.370	Esox_lucius
ENSCAFG00020006061	SMG5	100	97.036	ENSFCAG00000011783	SMG5	100	97.036	Felis_catus
ENSCAFG00020006061	SMG5	58	81.302	ENSFALG00000001166	-	99	81.072	Ficedula_albicollis
ENSCAFG00020006061	SMG5	98	91.734	ENSFDAG00000017388	SMG5	100	91.633	Fukomys_damarensis
ENSCAFG00020006061	SMG5	97	61.958	ENSFHEG00000013939	smg5	95	68.541	Fundulus_heteroclitus
ENSCAFG00020006061	SMG5	99	60.545	ENSGMOG00000007310	smg5	92	75.751	Gadus_morhua
ENSCAFG00020006061	SMG5	99	76.663	ENSGALG00000029918	-	100	75.806	Gallus_gallus
ENSCAFG00020006061	SMG5	82	75.515	ENSGAFG00000021691	smg5	95	66.773	Gambusia_affinis
ENSCAFG00020006061	SMG5	93	75.000	ENSGACG00000013142	smg5	99	61.226	Gasterosteus_aculeatus
ENSCAFG00020006061	SMG5	100	78.748	ENSGAGG00000016131	SMG5	100	78.273	Gopherus_agassizii
ENSCAFG00020006061	SMG5	100	93.701	ENSGGOG00000010932	SMG5	100	94.390	Gorilla_gorilla
ENSCAFG00020006061	SMG5	99	64.603	ENSHBUG00000008654	smg5	99	64.951	Haplochromis_burtoni
ENSCAFG00020006061	SMG5	100	91.159	ENSHGLG00000019152	SMG5	100	91.650	Heterocephalus_glaber_female
ENSCAFG00020006061	SMG5	90	91.118	ENSHGLG00100015948	SMG5	99	91.667	Heterocephalus_glaber_male
ENSCAFG00020006061	SMG5	86	73.171	ENSHCOG00000010229	smg5	83	78.571	Hippocampus_comes
ENSCAFG00020006061	SMG5	99	61.650	ENSIPUG00000006624	Smg5	99	61.217	Ictalurus_punctatus
ENSCAFG00020006061	SMG5	100	93.898	ENSSTOG00000001780	SMG5	100	94.193	Ictidomys_tridecemlineatus
ENSCAFG00020006061	SMG5	100	90.579	ENSJJAG00000022763	Smg5	100	90.186	Jaculus_jaculus
ENSCAFG00020006061	SMG5	91	77.488	ENSKMAG00000014586	smg5	99	60.393	Kryptolebias_marmoratus
ENSCAFG00020006061	SMG5	99	65.411	ENSLBEG00000002145	smg5	99	65.015	Labrus_bergylta
ENSCAFG00020006061	SMG5	100	63.019	ENSLACG00000010521	SMG5	100	63.878	Latimeria_chalumnae
ENSCAFG00020006061	SMG5	97	78.140	ENSLOCG00000008380	smg5	92	78.436	Lepisosteus_oculatus
ENSCAFG00020006061	SMG5	100	93.602	ENSLAFG00000006241	SMG5	100	93.602	Loxodonta_africana
ENSCAFG00020006061	SMG5	100	93.799	ENSMFAG00000045357	SMG5	100	94.587	Macaca_fascicularis
ENSCAFG00020006061	SMG5	100	93.799	ENSMMUG00000000090	SMG5	100	94.587	Macaca_mulatta
ENSCAFG00020006061	SMG5	100	93.701	ENSMNEG00000044425	SMG5	100	94.488	Macaca_nemestrina
ENSCAFG00020006061	SMG5	100	88.333	ENSMLEG00000041192	SMG5	100	88.333	Mandrillus_leucophaeus
ENSCAFG00020006061	SMG5	99	60.286	ENSMAMG00000010683	smg5	99	60.286	Mastacembelus_armatus
ENSCAFG00020006061	SMG5	99	63.619	ENSMZEG00005015815	smg5	99	63.092	Maylandia_zebra
ENSCAFG00020006061	SMG5	62	58.626	ENSMZEG00005016543	smg5	100	58.589	Maylandia_zebra
ENSCAFG00020006061	SMG5	100	89.872	ENSMAUG00000010381	Smg5	100	89.479	Mesocricetus_auratus
ENSCAFG00020006061	SMG5	55	44.737	ENSMAUG00000000043	-	96	44.308	Mesocricetus_auratus
ENSCAFG00020006061	SMG5	100	93.996	ENSMICG00000002257	SMG5	100	94.685	Microcebus_murinus
ENSCAFG00020006061	SMG5	100	89.794	ENSMOCG00000016590	Smg5	100	89.598	Microtus_ochrogaster
ENSCAFG00020006061	SMG5	99	58.183	ENSMMOG00000017199	smg5	99	59.730	Mola_mola
ENSCAFG00020006061	SMG5	87	88.063	ENSMODG00000016901	SMG5	98	88.739	Monodelphis_domestica
ENSCAFG00020006061	SMG5	76	37.280	ENSMODG00000010675	-	84	37.666	Monodelphis_domestica
ENSCAFG00020006061	SMG5	97	34.187	ENSMODG00000004511	-	99	33.762	Monodelphis_domestica
ENSCAFG00020006061	SMG5	75	39.370	ENSMODG00000004735	-	86	39.467	Monodelphis_domestica
ENSCAFG00020006061	SMG5	93	37.221	ENSMODG00000004532	-	83	38.133	Monodelphis_domestica
ENSCAFG00020006061	SMG5	99	60.161	ENSMALG00000010375	smg5	99	57.833	Monopterus_albus
ENSCAFG00020006061	SMG5	100	90.954	MGP_CAROLIEiJ_G0025163	Smg5	100	98.324	Mus_caroli
ENSCAFG00020006061	SMG5	100	91.052	ENSMUSG00000001415	Smg5	99	98.324	Mus_musculus
ENSCAFG00020006061	SMG5	100	90.579	MGP_PahariEiJ_G0026606	Smg5	100	98.324	Mus_pahari
ENSCAFG00020006061	SMG5	100	90.954	MGP_SPRETEiJ_G0026104	Smg5	100	98.324	Mus_spretus
ENSCAFG00020006061	SMG5	93	95.026	ENSMPUG00000004546	SMG5	100	95.026	Mustela_putorius_furo
ENSCAFG00020006061	SMG5	100	92.633	ENSMLUG00000008518	SMG5	100	92.633	Myotis_lucifugus
ENSCAFG00020006061	SMG5	98	44.456	ENSNGAG00000012101	-	98	44.522	Nannospalax_galili
ENSCAFG00020006061	SMG5	100	91.445	ENSNGAG00000020706	Smg5	100	91.839	Nannospalax_galili
ENSCAFG00020006061	SMG5	96	62.993	ENSNBRG00000004332	smg5	98	63.471	Neolamprologus_brichardi
ENSCAFG00020006061	SMG5	100	93.406	ENSNLEG00000012439	SMG5	100	94.094	Nomascus_leucogenys
ENSCAFG00020006061	SMG5	100	86.627	ENSMEUG00000012834	SMG5	100	86.136	Notamacropus_eugenii
ENSCAFG00020006061	SMG5	100	91.732	ENSOPRG00000009152	SMG5	100	92.028	Ochotona_princeps
ENSCAFG00020006061	SMG5	100	92.815	ENSODEG00000012237	SMG5	100	93.504	Octodon_degus
ENSCAFG00020006061	SMG5	99	59.769	ENSONIG00000008632	smg5	92	76.960	Oreochromis_niloticus
ENSCAFG00020006061	SMG5	98	93.246	ENSOCUG00000012886	SMG5	100	93.851	Oryctolagus_cuniculus
ENSCAFG00020006061	SMG5	89	41.170	ENSOCUG00000023338	-	99	40.684	Oryctolagus_cuniculus
ENSCAFG00020006061	SMG5	99	64.027	ENSORLG00020013127	smg5	99	65.294	Oryzias_latipes_hni
ENSCAFG00020006061	SMG5	99	63.938	ENSORLG00015019014	smg5	99	65.298	Oryzias_latipes_hsok
ENSCAFG00020006061	SMG5	100	93.406	ENSOGAG00000004966	SMG5	100	94.094	Otolemur_garnettii
ENSCAFG00020006061	SMG5	99	44.161	ENSOARG00000011963	-	99	44.161	Ovis_aries
ENSCAFG00020006061	SMG5	100	94.094	ENSOARG00000005778	SMG5	100	94.094	Ovis_aries
ENSCAFG00020006061	SMG5	100	93.602	ENSPPAG00000011996	SMG5	100	94.291	Pan_paniscus
ENSCAFG00020006061	SMG5	98	97.062	ENSPPRG00000011901	SMG5	100	97.062	Panthera_pardus
ENSCAFG00020006061	SMG5	99	88.600	ENSPTIG00000007892	SMG5	99	88.188	Panthera_tigris_altaica
ENSCAFG00020006061	SMG5	100	93.799	ENSPTRG00000023925	SMG5	100	94.488	Pan_troglodytes
ENSCAFG00020006061	SMG5	100	93.799	ENSPTRG00000049282	-	100	94.488	Pan_troglodytes
ENSCAFG00020006061	SMG5	100	93.898	ENSPANG00000011201	SMG5	100	94.685	Papio_anubis
ENSCAFG00020006061	SMG5	99	65.456	ENSPKIG00000009402	smg5	99	66.568	Paramormyrops_kingsleyae
ENSCAFG00020006061	SMG5	98	78.989	ENSPSIG00000015198	SMG5	100	79.187	Pelodiscus_sinensis
ENSCAFG00020006061	SMG5	99	60.313	ENSPMGG00000010465	smg5	99	59.871	Periophthalmus_magnuspinnatus
ENSCAFG00020006061	SMG5	55	46.290	ENSPEMG00000010022	-	95	45.583	Peromyscus_maniculatus_bairdii
ENSCAFG00020006061	SMG5	100	90.855	ENSPEMG00000001819	Smg5	100	90.462	Peromyscus_maniculatus_bairdii
ENSCAFG00020006061	SMG5	99	50.096	ENSPMAG00000000410	smg5	100	50.522	Petromyzon_marinus
ENSCAFG00020006061	SMG5	100	88.016	ENSPCIG00000018938	SMG5	100	88.507	Phascolarctos_cinereus
ENSCAFG00020006061	SMG5	93	75.744	ENSPFOG00000010191	smg5	99	61.601	Poecilia_formosa
ENSCAFG00020006061	SMG5	93	75.744	ENSPLAG00000009332	smg5	99	61.511	Poecilia_latipinna
ENSCAFG00020006061	SMG5	93	75.744	ENSPMEG00000014105	smg5	99	65.377	Poecilia_mexicana
ENSCAFG00020006061	SMG5	93	75.744	ENSPREG00000017713	smg5	99	61.241	Poecilia_reticulata
ENSCAFG00020006061	SMG5	100	93.898	ENSPPYG00000000723	SMG5	100	94.587	Pongo_abelii
ENSCAFG00020006061	SMG5	75	94.475	ENSPCAG00000008412	SMG5	81	94.475	Procavia_capensis
ENSCAFG00020006061	SMG5	100	93.996	ENSPCOG00000004741	SMG5	100	94.685	Propithecus_coquereli
ENSCAFG00020006061	SMG5	100	84.843	ENSPVAG00000016748	SMG5	100	84.843	Pteropus_vampyrus
ENSCAFG00020006061	SMG5	99	59.541	ENSPNYG00000013397	smg5	99	60.391	Pundamilia_nyererei
ENSCAFG00020006061	SMG5	99	62.078	ENSPNAG00000028363	smg5	99	61.722	Pygocentrus_nattereri
ENSCAFG00020006061	SMG5	100	91.445	ENSRNOG00000019590	Smg5	100	90.855	Rattus_norvegicus
ENSCAFG00020006061	SMG5	100	93.898	ENSRBIG00000027428	SMG5	100	94.685	Rhinopithecus_bieti
ENSCAFG00020006061	SMG5	100	93.799	ENSRROG00000030035	SMG5	100	94.587	Rhinopithecus_roxellana
ENSCAFG00020006061	SMG5	100	93.799	ENSSBOG00000033339	SMG5	100	94.488	Saimiri_boliviensis_boliviensis
ENSCAFG00020006061	SMG5	99	33.689	ENSSHAG00000009572	-	99	32.008	Sarcophilus_harrisii
ENSCAFG00020006061	SMG5	98	87.487	ENSSHAG00000014163	SMG5	100	88.088	Sarcophilus_harrisii
ENSCAFG00020006061	SMG5	64	40.351	ENSSHAG00000000935	-	92	41.463	Sarcophilus_harrisii
ENSCAFG00020006061	SMG5	87	40.157	ENSSHAG00000000561	-	87	40.157	Sarcophilus_harrisii
ENSCAFG00020006061	SMG5	99	66.470	ENSSFOG00015024175	smg5	99	66.372	Scleropages_formosus
ENSCAFG00020006061	SMG5	92	76.157	ENSSMAG00000013059	smg5	99	60.197	Scophthalmus_maximus
ENSCAFG00020006061	SMG5	99	59.627	ENSSDUG00000007122	smg5	92	76.000	Seriola_dumerili
ENSCAFG00020006061	SMG5	99	59.840	ENSSLDG00000011418	smg5	92	76.485	Seriola_lalandi_dorsalis
ENSCAFG00020006061	SMG5	90	80.698	ENSSARG00000012484	SMG5	100	80.589	Sorex_araneus
ENSCAFG00020006061	SMG5	93	76.393	ENSSPUG00000002260	SMG5	100	75.988	Sphenodon_punctatus
ENSCAFG00020006061	SMG5	91	77.123	ENSSPAG00000014266	smg5	98	65.340	Stegastes_partitus
ENSCAFG00020006061	SMG5	100	95.177	ENSSSCG00000006490	-	100	95.177	Sus_scrofa
ENSCAFG00020006061	SMG5	99	73.267	ENSSSCG00000039308	-	100	73.465	Sus_scrofa
ENSCAFG00020006061	SMG5	99	79.327	ENSTGUG00000003748	-	100	79.102	Taeniopygia_guttata
ENSCAFG00020006061	SMG5	99	63.830	ENSTRUG00000012580	smg5	92	75.410	Takifugu_rubripes
ENSCAFG00020006061	SMG5	99	64.888	ENSTNIG00000010303	smg5	92	74.074	Tetraodon_nigroviridis
ENSCAFG00020006061	SMG5	60	99.015	ENSTBEG00000002777	SMG5	60	99.015	Tupaia_belangeri
ENSCAFG00020006061	SMG5	100	89.567	ENSTTRG00000001401	SMG5	100	89.567	Tursiops_truncatus
ENSCAFG00020006061	SMG5	100	96.637	ENSUAMG00000013721	SMG5	100	96.637	Ursus_americanus
ENSCAFG00020006061	SMG5	98	91.616	ENSUMAG00000018041	SMG5	97	91.616	Ursus_maritimus
ENSCAFG00020006061	SMG5	98	85.267	ENSVPAG00000009446	SMG5	99	85.267	Vicugna_pacos
ENSCAFG00020006061	SMG5	100	99.604	ENSVVUG00000005887	SMG5	100	99.604	Vulpes_vulpes
ENSCAFG00020006061	SMG5	76	64.817	ENSXETG00000033791	SMG5	99	64.187	Xenopus_tropicalis
ENSCAFG00020006061	SMG5	69	75.286	ENSXCOG00000004379	smg5	95	69.231	Xiphophorus_couchianus
ENSCAFG00020006061	SMG5	93	75.057	ENSXMAG00000013499	smg5	99	65.366	Xiphophorus_maculatus