EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00020006412 (Gene tree)
Gene ID: 112665393
Gene Symbol: YBX3
Alias: CSDA|CSDA1|ZONAB|dbpA
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Canis_lupus_dingo
Status: putative
Strand: Minus strand
Length: 24704 bases
Position: chrQKWQ01001746.1:1859667-1884370
Accession: 2428
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00020007948	CSD	PF00313.22	4.7e-14	1	1
ENSCAFP00020007950	CSD	PF00313.22	1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00020009218	YBX3-201	1095	-	ENSCAFP00020007948	364 (aa)	-	-
ENSCAFT00020009220	YBX3-202	891	-	ENSCAFP00020007950	296 (aa)	-	-

Gene Model

Click here to download ENSCAFG00020006412's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00020006412's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00020006412	YBX3	80	43.750	ENSCAFG00020002915	YBX1	84	51.930
ENSCAFG00020006412	YBX3	87	44.785	ENSCAFG00020014118	-	87	42.215
ENSCAFG00020006412	YBX3	80	40.385	ENSCAFG00020024987	-	88	44.561

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00020006412	YBX3	100	86.400	ENSG00000060138	YBX3	100	87.467	Homo_sapiens
ENSCAFG00020006412	YBX3	95	89.802	ENSAMEG00000009393	YBX3	95	92.582	Ailuropoda_melanoleuca
ENSCAFG00020006412	YBX3	68	89.320	ENSAPLG00000003147	YBX3	100	66.667	Anas_platyrhynchos
ENSCAFG00020006412	YBX3	99	83.077	ENSANAG00000033366	-	93	81.538	Aotus_nancymaae
ENSCAFG00020006412	YBX3	89	88.393	ENSANAG00000024492	-	100	85.067	Aotus_nancymaae
ENSCAFG00020006412	YBX3	100	85.526	ENSBTAG00000009663	YBX3	87	92.857	Bos_taurus
ENSCAFG00020006412	YBX3	74	89.873	ENSCJAG00000033824	-	97	89.041	Callithrix_jacchus
ENSCAFG00020006412	YBX3	100	85.867	ENSCJAG00000021660	-	100	87.200	Callithrix_jacchus
ENSCAFG00020006412	YBX3	76	95.804	ENSCAFG00000013401	YBX3	100	94.931	Canis_familiaris
ENSCAFG00020006412	YBX3	100	84.375	ENSCHIG00000010863	YBX3	100	81.183	Capra_hircus
ENSCAFG00020006412	YBX3	76	90.941	ENSTSYG00000004204	-	88	91.289	Carlito_syrichta
ENSCAFG00020006412	YBX3	100	71.475	ENSTSYG00000035821	-	100	67.213	Carlito_syrichta
ENSCAFG00020006412	YBX3	76	86.014	ENSCAPG00000015039	YBX3	93	86.014	Cavia_aperea
ENSCAFG00020006412	YBX3	78	87.031	ENSCPOG00000011329	YBX3	86	86.986	Cavia_porcellus
ENSCAFG00020006412	YBX3	100	86.133	ENSCCAG00000016469	YBX3	100	87.200	Cebus_capucinus
ENSCAFG00020006412	YBX3	100	86.400	ENSCATG00000034411	YBX3	100	87.200	Cercocebus_atys
ENSCAFG00020006412	YBX3	76	87.063	ENSCLAG00000016030	YBX3	94	87.063	Chinchilla_lanigera
ENSCAFG00020006412	YBX3	100	86.400	ENSCSAG00000008744	YBX3	100	87.200	Chlorocebus_sabaeus
ENSCAFG00020006412	YBX3	98	72.581	ENSCHOG00000011988	YBX3	56	88.000	Choloepus_hoffmanni
ENSCAFG00020006412	YBX3	77	77.855	ENSCPBG00000014147	YBX3	81	77.663	Chrysemys_picta_bellii
ENSCAFG00020006412	YBX3	78	88.814	ENSCANG00000036801	YBX3	93	89.420	Colobus_angolensis_palliatus
ENSCAFG00020006412	YBX3	84	88.608	ENSCGRG00001016148	Ybx3	100	81.600	Cricetulus_griseus_chok1gshd
ENSCAFG00020006412	YBX3	76	89.347	ENSCGRG00000004563	Ybx3	98	89.347	Cricetulus_griseus_crigri
ENSCAFG00020006412	YBX3	89	81.711	ENSDORG00000009103	Ybx3	81	90.559	Dipodomys_ordii
ENSCAFG00020006412	YBX3	75	82.168	ENSETEG00000002557	YBX3	99	80.282	Echinops_telfairi
ENSCAFG00020006412	YBX3	100	91.758	ENSEASG00005014726	YBX3	100	92.582	Equus_asinus_asinus
ENSCAFG00020006412	YBX3	100	95.604	ENSECAG00000013777	YBX3	100	95.604	Equus_caballus
ENSCAFG00020006412	YBX3	75	89.085	ENSEEUG00000010415	YBX3	100	89.437	Erinaceus_europaeus
ENSCAFG00020006412	YBX3	100	93.566	ENSFCAG00000027748	YBX3	100	93.566	Felis_catus
ENSCAFG00020006412	YBX3	70	85.185	ENSFALG00000003661	YBX3	75	87.629	Ficedula_albicollis
ENSCAFG00020006412	YBX3	76	83.217	ENSFDAG00000021192	YBX3	92	83.217	Fukomys_damarensis
ENSCAFG00020006412	YBX3	100	53.476	ENSGALG00000031890	YBX3	76	78.378	Gallus_gallus
ENSCAFG00020006412	YBX3	100	67.105	ENSGAGG00000017780	YBX3	77	81.081	Gopherus_agassizii
ENSCAFG00020006412	YBX3	100	86.667	ENSGGOG00000001352	YBX3	100	87.467	Gorilla_gorilla
ENSCAFG00020006412	YBX3	73	77.737	ENSHGLG00000015495	-	88	74.074	Heterocephalus_glaber_female
ENSCAFG00020006412	YBX3	80	74.183	ENSHGLG00000014798	-	86	75.338	Heterocephalus_glaber_female
ENSCAFG00020006412	YBX3	71	88.991	ENSHGLG00100003589	YBX3	87	85.780	Heterocephalus_glaber_male
ENSCAFG00020006412	YBX3	76	85.664	ENSSTOG00000002108	-	88	85.664	Ictidomys_tridecemlineatus
ENSCAFG00020006412	YBX3	92	84.593	ENSSTOG00000032577	-	100	80.429	Ictidomys_tridecemlineatus
ENSCAFG00020006412	YBX3	78	67.230	ENSJJAG00000014239	Ybx3	95	74.419	Jaculus_jaculus
ENSCAFG00020006412	YBX3	100	90.617	ENSLAFG00000017247	YBX3	100	90.617	Loxodonta_africana
ENSCAFG00020006412	YBX3	100	87.332	ENSMFAG00000039369	YBX3	100	88.410	Macaca_fascicularis
ENSCAFG00020006412	YBX3	86	87.692	ENSMMUG00000022469	YBX3	98	88.715	Macaca_mulatta
ENSCAFG00020006412	YBX3	100	87.062	ENSMNEG00000045109	YBX3	100	88.140	Macaca_nemestrina
ENSCAFG00020006412	YBX3	91	81.050	ENSMLEG00000033618	YBX3	81	90.909	Mandrillus_leucophaeus
ENSCAFG00020006412	YBX3	70	78.704	ENSMGAG00000014224	YBX3	100	78.704	Meleagris_gallopavo
ENSCAFG00020006412	YBX3	87	87.692	ENSMAUG00000012185	Ybx3	91	89.726	Mesocricetus_auratus
ENSCAFG00020006412	YBX3	100	90.080	ENSMICG00000038002	-	100	90.617	Microcebus_murinus
ENSCAFG00020006412	YBX3	100	72.368	ENSMICG00000031459	-	85	81.429	Microcebus_murinus
ENSCAFG00020006412	YBX3	80	90.397	ENSMOCG00000016291	Ybx3	95	90.411	Microtus_ochrogaster
ENSCAFG00020006412	YBX3	76	82.230	ENSMODG00000018248	YBX3	91	82.230	Monodelphis_domestica
ENSCAFG00020006412	YBX3	84	88.924	MGP_CAROLIEiJ_G0028947	Ybx3	100	81.867	Mus_caroli
ENSCAFG00020006412	YBX3	84	88.924	ENSMUSG00000030189	Ybx3	100	81.867	Mus_musculus
ENSCAFG00020006412	YBX3	84	88.924	MGP_PahariEiJ_G0022709	Ybx3	100	81.867	Mus_pahari
ENSCAFG00020006412	YBX3	84	89.241	MGP_SPRETEiJ_G0029994	Ybx3	100	82.133	Mus_spretus
ENSCAFG00020006412	YBX3	100	77.690	ENSMPUG00000011810	YBX3	100	78.215	Mustela_putorius_furo
ENSCAFG00020006412	YBX3	69	95.686	ENSMLUG00000007476	YBX3	95	95.686	Myotis_lucifugus
ENSCAFG00020006412	YBX3	84	83.281	ENSNGAG00000000710	Ybx3	100	81.855	Nannospalax_galili
ENSCAFG00020006412	YBX3	88	85.843	ENSNLEG00000034844	YBX3	91	85.266	Nomascus_leucogenys
ENSCAFG00020006412	YBX3	80	83.775	ENSODEG00000017957	YBX3	93	82.965	Octodon_degus
ENSCAFG00020006412	YBX3	78	86.735	ENSOCUG00000001889	YBX3	85	86.644	Oryctolagus_cuniculus
ENSCAFG00020006412	YBX3	100	88.684	ENSOGAG00000013245	YBX3	100	89.211	Otolemur_garnettii
ENSCAFG00020006412	YBX3	79	81.757	ENSOARG00000020919	YBX3	99	82.253	Ovis_aries
ENSCAFG00020006412	YBX3	100	79.467	ENSPPAG00000039068	YBX3	82	90.444	Pan_paniscus
ENSCAFG00020006412	YBX3	100	93.834	ENSPPRG00000005859	YBX3	100	93.834	Panthera_pardus
ENSCAFG00020006412	YBX3	76	95.439	ENSPTIG00000005322	YBX3	81	95.439	Panthera_tigris_altaica
ENSCAFG00020006412	YBX3	100	86.933	ENSPTRG00000004681	YBX3	100	87.467	Pan_troglodytes
ENSCAFG00020006412	YBX3	100	86.133	ENSPANG00000010280	YBX3	100	87.200	Papio_anubis
ENSCAFG00020006412	YBX3	70	81.860	ENSPSIG00000009247	YBX3	93	89.011	Pelodiscus_sinensis
ENSCAFG00020006412	YBX3	86	88.820	ENSPEMG00000012132	-	92	90.753	Peromyscus_maniculatus_bairdii
ENSCAFG00020006412	YBX3	80	87.805	ENSPEMG00000010391	-	84	89.686	Peromyscus_maniculatus_bairdii
ENSCAFG00020006412	YBX3	69	82.072	ENSPCIG00000029949	YBX3	97	82.072	Phascolarctos_cinereus
ENSCAFG00020006412	YBX3	100	85.867	ENSPPYG00000004279	YBX3	100	87.200	Pongo_abelii
ENSCAFG00020006412	YBX3	78	86.689	ENSPCAG00000001397	YBX3	98	86.411	Procavia_capensis
ENSCAFG00020006412	YBX3	53	71.084	ENSPCOG00000011663	YBX3	100	89.370	Propithecus_coquereli
ENSCAFG00020006412	YBX3	100	77.212	ENSPVAG00000006740	YBX3	77	88.850	Pteropus_vampyrus
ENSCAFG00020006412	YBX3	84	88.924	ENSRNOG00000005480	Ybx3	100	81.867	Rattus_norvegicus
ENSCAFG00020006412	YBX3	100	85.333	ENSRBIG00000039208	YBX3	100	86.667	Rhinopithecus_bieti
ENSCAFG00020006412	YBX3	100	86.093	ENSRROG00000029638	YBX3	100	87.748	Rhinopithecus_roxellana
ENSCAFG00020006412	YBX3	85	92.793	ENSSBOG00000030573	YBX3	86	88.660	Saimiri_boliviensis_boliviensis
ENSCAFG00020006412	YBX3	67	88.660	ENSSHAG00000003262	YBX3	98	79.381	Sarcophilus_harrisii
ENSCAFG00020006412	YBX3	100	85.789	ENSSSCG00000000633	YBX3	100	89.211	Sus_scrofa
ENSCAFG00020006412	YBX3	69	87.619	ENSTGUG00000012047	YBX3	100	64.211	Taeniopygia_guttata
ENSCAFG00020006412	YBX3	100	79.679	ENSTBEG00000012570	YBX3	81	90.444	Tupaia_belangeri
ENSCAFG00020006412	YBX3	71	83.206	ENSTTRG00000008045	YBX3	96	85.882	Tursiops_truncatus
ENSCAFG00020006412	YBX3	74	95.971	ENSUAMG00000016662	YBX3	100	95.971	Ursus_americanus
ENSCAFG00020006412	YBX3	76	94.737	ENSUMAG00000016118	YBX3	94	94.737	Ursus_maritimus
ENSCAFG00020006412	YBX3	75	65.625	ENSVPAG00000000876	YBX3	100	68.905	Vicugna_pacos
ENSCAFG00020006412	YBX3	74	99.627	ENSVVUG00000004956	YBX3	100	99.627	Vulpes_vulpes
ENSCAFG00020006412	YBX3	71	68.326	ENSXETG00000016239	ybx3	90	66.964	Xenopus_tropicalis