EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00020009120 (Gene tree)
Gene ID: 112660976
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Canis_lupus_dingo
Status: putative
Strand: Minus strand
Length: 98199 bases
Position: chrQKWQ01000558.1:17578403-17676601
Accession: 112660976
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00020011413	XRN_N	PF03159.18	1.8e-96	1	1
ENSCAFP00020011402	XRN_N	PF03159.18	4e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00020013191	XRN1-201	5193	-	ENSCAFP00020011402	1730 (aa)	XP_025304577	UPI000DC750EA
ENSCAFT00020013202	XRN1-202	2883	-	ENSCAFP00020011413	960 (aa)	-	-

Gene Model

Click here to download ENSCAFG00020009120's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00020009120's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00020009120	XRN1	52	45.856	ENSCAFG00020027479	XRN2	71	39.971

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00020009120	XRN1	99	94.286	ENSG00000114127	XRN1	100	98.182	Homo_sapiens
ENSCAFG00020009120	XRN1	99	76.220	ENSAPOG00000000622	xrn1	93	76.972	Acanthochromis_polyacanthus
ENSCAFG00020009120	XRN1	99	98.813	ENSAMEG00000012538	XRN1	100	97.233	Ailuropoda_melanoleuca
ENSCAFG00020009120	XRN1	99	76.415	ENSACIG00000001057	xrn1	93	73.089	Amphilophus_citrinellus
ENSCAFG00020009120	XRN1	99	76.341	ENSAOCG00000014097	xrn1	96	70.625	Amphiprion_ocellaris
ENSCAFG00020009120	XRN1	99	76.341	ENSAPEG00000006620	xrn1	91	73.034	Amphiprion_percula
ENSCAFG00020009120	XRN1	99	77.060	ENSATEG00000009752	xrn1	96	71.667	Anabas_testudineus
ENSCAFG00020009120	XRN1	96	86.161	ENSAPLG00000004905	XRN1	100	76.798	Anas_platyrhynchos
ENSCAFG00020009120	XRN1	99	82.938	ENSACAG00000004985	XRN1	100	73.438	Anolis_carolinensis
ENSCAFG00020009120	XRN1	99	93.987	ENSANAG00000029013	XRN1	99	96.470	Aotus_nancymaae
ENSCAFG00020009120	XRN1	99	75.472	ENSACLG00000004806	xrn1	95	62.208	Astatotilapia_calliptera
ENSCAFG00020009120	XRN1	99	72.063	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSCAFG00020009120	XRN1	99	98.204	ENSBTAG00000011524	XRN1	100	91.743	Bos_taurus
ENSCAFG00020009120	XRN1	93	51.198	WBGene00012730	xrn-1	83	38.905	Caenorhabditis_elegans
ENSCAFG00020009120	XRN1	99	93.429	ENSCJAG00000001872	XRN1	100	91.623	Callithrix_jacchus
ENSCAFG00020009120	XRN1	100	99.884	ENSCAFG00000007783	XRN1	100	99.884	Canis_familiaris
ENSCAFG00020009120	XRN1	99	98.204	ENSCHIG00000019192	XRN1	99	93.754	Capra_hircus
ENSCAFG00020009120	XRN1	99	94.000	ENSTSYG00000002705	XRN1	100	91.917	Carlito_syrichta
ENSCAFG00020009120	XRN1	97	74.973	ENSCAPG00000004604	-	99	77.280	Cavia_aperea
ENSCAFG00020009120	XRN1	99	95.263	ENSCCAG00000034800	XRN1	99	97.464	Cebus_capucinus
ENSCAFG00020009120	XRN1	99	94.286	ENSCATG00000041794	XRN1	100	92.259	Cercocebus_atys
ENSCAFG00020009120	XRN1	99	93.615	ENSCLAG00000001451	XRN1	99	95.721	Chinchilla_lanigera
ENSCAFG00020009120	XRN1	99	94.286	ENSCSAG00000011265	XRN1	100	91.628	Chlorocebus_sabaeus
ENSCAFG00020009120	XRN1	57	98.701	ENSCHOG00000013961	-	59	98.701	Choloepus_hoffmanni
ENSCAFG00020009120	XRN1	84	59.625	ENSCSAVG00000008584	-	98	44.556	Ciona_savignyi
ENSCAFG00020009120	XRN1	99	95.675	ENSCANG00000037495	XRN1	99	98.204	Colobus_angolensis_palliatus
ENSCAFG00020009120	XRN1	99	93.402	ENSCGRG00001019411	Xrn1	99	95.721	Cricetulus_griseus_chok1gshd
ENSCAFG00020009120	XRN1	99	93.402	ENSCGRG00000012464	Xrn1	99	95.721	Cricetulus_griseus_crigri
ENSCAFG00020009120	XRN1	99	75.671	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSCAFG00020009120	XRN1	99	74.209	ENSCVAG00000013089	xrn1	99	72.840	Cyprinodon_variegatus
ENSCAFG00020009120	XRN1	99	76.656	ENSDARG00000091652	xrn1	98	80.380	Danio_rerio
ENSCAFG00020009120	XRN1	99	92.247	ENSDORG00000013833	Xrn1	100	87.637	Dipodomys_ordii
ENSCAFG00020009120	XRN1	96	52.769	FBgn0020261	pcm	76	39.614	Drosophila_melanogaster
ENSCAFG00020009120	XRN1	86	100.000	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSCAFG00020009120	XRN1	99	98.204	ENSEASG00005002687	XRN1	99	98.204	Equus_asinus_asinus
ENSCAFG00020009120	XRN1	99	98.503	ENSECAG00000008301	XRN1	100	91.915	Equus_caballus
ENSCAFG00020009120	XRN1	84	93.870	ENSEEUG00000011323	XRN1	92	83.187	Erinaceus_europaeus
ENSCAFG00020009120	XRN1	99	76.741	ENSELUG00000000169	xrn1	95	62.765	Esox_lucius
ENSCAFG00020009120	XRN1	99	97.006	ENSFCAG00000027589	XRN1	99	97.143	Felis_catus
ENSCAFG00020009120	XRN1	99	85.759	ENSFALG00000007021	XRN1	100	74.902	Ficedula_albicollis
ENSCAFG00020009120	XRN1	99	95.796	ENSFDAG00000020494	XRN1	99	95.087	Fukomys_damarensis
ENSCAFG00020009120	XRN1	99	74.563	ENSGMOG00000006396	xrn1	80	68.117	Gadus_morhua
ENSCAFG00020009120	XRN1	99	86.234	ENSGALG00000002706	XRN1	100	75.660	Gallus_gallus
ENSCAFG00020009120	XRN1	99	74.725	ENSGACG00000014328	xrn1	95	62.217	Gasterosteus_aculeatus
ENSCAFG00020009120	XRN1	99	88.024	ENSGAGG00000017535	XRN1	99	79.024	Gopherus_agassizii
ENSCAFG00020009120	XRN1	99	94.000	ENSGGOG00000008047	XRN1	100	91.912	Gorilla_gorilla
ENSCAFG00020009120	XRN1	99	76.115	ENSHBUG00000005908	xrn1	98	74.534	Haplochromis_burtoni
ENSCAFG00020009120	XRN1	99	94.027	ENSHGLG00000014476	XRN1	99	96.407	Heterocephalus_glaber_female
ENSCAFG00020009120	XRN1	99	94.027	ENSHGLG00100015130	XRN1	99	96.407	Heterocephalus_glaber_male
ENSCAFG00020009120	XRN1	99	74.154	ENSHCOG00000014062	xrn1	97	70.312	Hippocampus_comes
ENSCAFG00020009120	XRN1	99	76.619	ENSIPUG00000015229	xrn1	96	63.406	Ictalurus_punctatus
ENSCAFG00020009120	XRN1	99	95.562	ENSSTOG00000013552	XRN1	99	98.204	Ictidomys_tridecemlineatus
ENSCAFG00020009120	XRN1	97	92.706	ENSJJAG00000010863	Xrn1	99	94.611	Jaculus_jaculus
ENSCAFG00020009120	XRN1	99	75.835	ENSKMAG00000021356	xrn1	94	77.004	Kryptolebias_marmoratus
ENSCAFG00020009120	XRN1	99	75.316	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSCAFG00020009120	XRN1	99	81.732	ENSLACG00000009020	XRN1	96	71.760	Latimeria_chalumnae
ENSCAFG00020009120	XRN1	99	79.624	ENSLOCG00000007944	xrn1	98	65.182	Lepisosteus_oculatus
ENSCAFG00020009120	XRN1	99	93.354	ENSLAFG00000015426	XRN1	100	96.445	Loxodonta_africana
ENSCAFG00020009120	XRN1	99	94.286	ENSMFAG00000032599	XRN1	100	92.374	Macaca_fascicularis
ENSCAFG00020009120	XRN1	99	94.286	ENSMMUG00000014038	XRN1	100	92.317	Macaca_mulatta
ENSCAFG00020009120	XRN1	99	94.286	ENSMNEG00000034217	XRN1	100	92.201	Macaca_nemestrina
ENSCAFG00020009120	XRN1	99	76.850	ENSMAMG00000013219	xrn1	94	77.664	Mastacembelus_armatus
ENSCAFG00020009120	XRN1	99	75.314	ENSMZEG00005015099	xrn1	95	62.091	Maylandia_zebra
ENSCAFG00020009120	XRN1	97	82.286	ENSMGAG00000006333	XRN1	100	75.668	Meleagris_gallopavo
ENSCAFG00020009120	XRN1	99	94.286	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSCAFG00020009120	XRN1	99	92.539	ENSMOCG00000008665	Xrn1	99	94.770	Microtus_ochrogaster
ENSCAFG00020009120	XRN1	54	65.867	ENSMMOG00000020896	-	96	67.528	Mola_mola
ENSCAFG00020009120	XRN1	99	87.714	ENSMODG00000021236	XRN1	100	79.954	Monodelphis_domestica
ENSCAFG00020009120	XRN1	99	69.036	ENSMALG00000004098	xrn1	98	67.189	Monopterus_albus
ENSCAFG00020009120	XRN1	99	92.894	MGP_CAROLIEiJ_G0032535	Xrn1	100	97.500	Mus_caroli
ENSCAFG00020009120	XRN1	99	92.791	ENSMUSG00000032410	Xrn1	100	97.500	Mus_musculus
ENSCAFG00020009120	XRN1	99	92.791	MGP_PahariEiJ_G0015404	Xrn1	100	97.500	Mus_pahari
ENSCAFG00020009120	XRN1	99	92.791	MGP_SPRETEiJ_G0033678	Xrn1	100	97.500	Mus_spretus
ENSCAFG00020009120	XRN1	99	99.401	ENSMPUG00000012040	XRN1	100	94.323	Mustela_putorius_furo
ENSCAFG00020009120	XRN1	98	96.262	ENSMLUG00000016885	XRN1	100	92.263	Myotis_lucifugus
ENSCAFG00020009120	XRN1	99	90.589	ENSNGAG00000023964	Xrn1	100	90.589	Nannospalax_galili
ENSCAFG00020009120	XRN1	99	94.006	ENSNLEG00000004726	XRN1	100	92.085	Nomascus_leucogenys
ENSCAFG00020009120	XRN1	75	98.969	ENSMEUG00000014473	-	77	99.029	Notamacropus_eugenii
ENSCAFG00020009120	XRN1	74	94.565	ENSOPRG00000007337	-	78	84.800	Ochotona_princeps
ENSCAFG00020009120	XRN1	99	76.063	ENSONIG00000016673	xrn1	99	64.728	Oreochromis_niloticus
ENSCAFG00020009120	XRN1	85	84.286	ENSOANG00000006735	XRN1	100	76.229	Ornithorhynchus_anatinus
ENSCAFG00020009120	XRN1	99	94.571	ENSOCUG00000001861	XRN1	100	91.404	Oryctolagus_cuniculus
ENSCAFG00020009120	XRN1	99	76.220	ENSORLG00000013005	xrn1	92	72.378	Oryzias_latipes
ENSCAFG00020009120	XRN1	99	76.935	ENSORLG00020005559	xrn1	98	72.632	Oryzias_latipes_hni
ENSCAFG00020009120	XRN1	99	76.461	ENSORLG00015022523	xrn1	89	72.472	Oryzias_latipes_hsok
ENSCAFG00020009120	XRN1	99	75.987	ENSOMEG00000015397	xrn1	100	73.187	Oryzias_melastigma
ENSCAFG00020009120	XRN1	99	93.714	ENSOGAG00000000170	XRN1	100	88.424	Otolemur_garnettii
ENSCAFG00020009120	XRN1	99	98.204	ENSOARG00000006343	XRN1	99	93.743	Ovis_aries
ENSCAFG00020009120	XRN1	99	94.286	ENSPPAG00000010180	XRN1	100	91.912	Pan_paniscus
ENSCAFG00020009120	XRN1	99	98.802	ENSPPRG00000007125	XRN1	100	94.342	Panthera_pardus
ENSCAFG00020009120	XRN1	99	98.802	ENSPTIG00000021081	XRN1	100	94.400	Panthera_tigris_altaica
ENSCAFG00020009120	XRN1	99	94.286	ENSPTRG00000015482	XRN1	100	91.912	Pan_troglodytes
ENSCAFG00020009120	XRN1	99	94.286	ENSPANG00000010638	XRN1	100	92.201	Papio_anubis
ENSCAFG00020009120	XRN1	99	86.310	ENSPSIG00000018050	XRN1	100	77.898	Pelodiscus_sinensis
ENSCAFG00020009120	XRN1	99	73.018	ENSPMGG00000002648	xrn1	98	78.807	Periophthalmus_magnuspinnatus
ENSCAFG00020009120	XRN1	99	92.784	ENSPEMG00000020610	Xrn1	99	95.404	Peromyscus_maniculatus_bairdii
ENSCAFG00020009120	XRN1	93	52.221	ENSPMAG00000002975	xrn1	91	78.736	Petromyzon_marinus
ENSCAFG00020009120	XRN1	99	87.951	ENSPCIG00000028735	XRN1	99	90.194	Phascolarctos_cinereus
ENSCAFG00020009120	XRN1	99	75.824	ENSPFOG00000013932	xrn1	99	64.201	Poecilia_formosa
ENSCAFG00020009120	XRN1	99	76.220	ENSPLAG00000021653	xrn1	99	63.631	Poecilia_latipinna
ENSCAFG00020009120	XRN1	99	75.868	ENSPMEG00000003076	xrn1	95	63.740	Poecilia_mexicana
ENSCAFG00020009120	XRN1	99	75.743	ENSPREG00000021147	xrn1	96	69.819	Poecilia_reticulata
ENSCAFG00020009120	XRN1	99	94.000	ENSPPYG00000014172	XRN1	100	91.112	Pongo_abelii
ENSCAFG00020009120	XRN1	92	91.143	ENSPCAG00000005638	XRN1	96	82.411	Procavia_capensis
ENSCAFG00020009120	XRN1	99	95.572	ENSPCOG00000013089	XRN1	99	98.503	Propithecus_coquereli
ENSCAFG00020009120	XRN1	99	97.289	ENSPVAG00000016265	XRN1	93	92.981	Pteropus_vampyrus
ENSCAFG00020009120	XRN1	99	75.629	ENSPNYG00000010570	xrn1	94	72.231	Pundamilia_nyererei
ENSCAFG00020009120	XRN1	99	74.092	ENSPNAG00000023531	xrn1	97	61.273	Pygocentrus_nattereri
ENSCAFG00020009120	XRN1	99	91.325	ENSRNOG00000042951	Xrn1	100	88.966	Rattus_norvegicus
ENSCAFG00020009120	XRN1	99	94.000	ENSRBIG00000041227	XRN1	100	91.450	Rhinopithecus_bieti
ENSCAFG00020009120	XRN1	88	52.589	YGL173C	XRN1	81	34.355	Saccharomyces_cerevisiae
ENSCAFG00020009120	XRN1	99	93.691	ENSSBOG00000029561	XRN1	100	91.681	Saimiri_boliviensis_boliviensis
ENSCAFG00020009120	XRN1	96	87.143	ENSSHAG00000016207	XRN1	100	81.024	Sarcophilus_harrisii
ENSCAFG00020009120	XRN1	99	76.789	ENSSFOG00015024211	xrn1	97	62.441	Scleropages_formosus
ENSCAFG00020009120	XRN1	99	77.129	ENSSMAG00000016534	xrn1	94	72.698	Scophthalmus_maximus
ENSCAFG00020009120	XRN1	99	77.093	ENSSDUG00000010306	xrn1	92	72.986	Seriola_dumerili
ENSCAFG00020009120	XRN1	99	77.093	ENSSLDG00000021543	xrn1	96	72.452	Seriola_lalandi_dorsalis
ENSCAFG00020009120	XRN1	89	88.797	ENSSARG00000007741	-	81	85.434	Sorex_araneus
ENSCAFG00020009120	XRN1	50	73.494	ENSSPAG00000009856	-	96	76.876	Stegastes_partitus
ENSCAFG00020009120	XRN1	99	85.918	ENSTGUG00000008498	XRN1	100	76.335	Taeniopygia_guttata
ENSCAFG00020009120	XRN1	99	74.960	ENSTRUG00000004895	xrn1	96	77.244	Takifugu_rubripes
ENSCAFG00020009120	XRN1	97	72.977	ENSTNIG00000017615	xrn1	96	59.467	Tetraodon_nigroviridis
ENSCAFG00020009120	XRN1	91	94.382	ENSTBEG00000003256	XRN1	89	86.922	Tupaia_belangeri
ENSCAFG00020009120	XRN1	99	98.494	ENSTTRG00000012914	XRN1	100	88.245	Tursiops_truncatus
ENSCAFG00020009120	XRN1	99	99.701	ENSUAMG00000001608	XRN1	99	99.701	Ursus_americanus
ENSCAFG00020009120	XRN1	99	99.701	ENSUMAG00000013625	XRN1	100	98.095	Ursus_maritimus
ENSCAFG00020009120	XRN1	99	97.006	ENSVPAG00000004690	XRN1	100	89.564	Vicugna_pacos
ENSCAFG00020009120	XRN1	100	99.538	ENSVVUG00000024461	XRN1	100	99.538	Vulpes_vulpes
ENSCAFG00020009120	XRN1	99	80.975	ENSXETG00000000619	xrn1	99	88.802	Xenopus_tropicalis
ENSCAFG00020009120	XRN1	99	76.424	ENSXCOG00000007917	xrn1	92	72.861	Xiphophorus_couchianus
ENSCAFG00020009120	XRN1	99	75.000	ENSXMAG00000018320	xrn1	93	72.453	Xiphophorus_maculatus