EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCAFG00020009263 (Gene tree)
Gene ID: 112659986
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Canis_lupus_dingo
Status: putative
Strand: Plus strand
Length: 13323 bases
Position: chrQKWQ01000243.1:25678974-25692296
Accession: 25792
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00020011494	HVSL	PF09749.9	1.7e-64	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00020013289	USB1-201	801	-	ENSCAFP00020011494	266 (aa)	-	-

Gene Model

Click here to download ENSCAFG00020009263's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00020009263's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00020009263	USB1	99	78.755	ENSG00000103005	USB1	99	86.854	Homo_sapiens
ENSCAFG00020009263	USB1	85	51.327	ENSAPOG00000011942	usb1	80	51.327	Acanthochromis_polyacanthus
ENSCAFG00020009263	USB1	99	85.921	ENSAMEG00000017205	USB1	99	88.060	Ailuropoda_melanoleuca
ENSCAFG00020009263	USB1	88	53.419	ENSACIG00000012234	usb1	99	51.111	Amphilophus_citrinellus
ENSCAFG00020009263	USB1	85	52.655	ENSAOCG00000014831	usb1	99	46.429	Amphiprion_ocellaris
ENSCAFG00020009263	USB1	85	53.097	ENSAPEG00000000296	usb1	99	46.786	Amphiprion_percula
ENSCAFG00020009263	USB1	98	48.387	ENSATEG00000009348	usb1	99	48.746	Anabas_testudineus
ENSCAFG00020009263	USB1	84	71.111	ENSAPLG00000002756	USB1	99	71.556	Anas_platyrhynchos
ENSCAFG00020009263	USB1	85	62.719	ENSACAG00000015481	USB1	99	62.719	Anolis_carolinensis
ENSCAFG00020009263	USB1	99	79.121	ENSANAG00000035640	USB1	99	80.220	Aotus_nancymaae
ENSCAFG00020009263	USB1	84	53.363	ENSACLG00000020586	usb1	99	48.387	Astatotilapia_calliptera
ENSCAFG00020009263	USB1	94	47.809	ENSAMXG00000040146	usb1	83	47.809	Astyanax_mexicanus
ENSCAFG00020009263	USB1	99	82.642	ENSBTAG00000015758	USB1	99	82.642	Bos_taurus
ENSCAFG00020009263	USB1	99	80.220	ENSCJAG00000011733	USB1	99	81.319	Callithrix_jacchus
ENSCAFG00020009263	USB1	100	93.407	ENSCAFG00000008556	USB1	73	93.407	Canis_familiaris
ENSCAFG00020009263	USB1	99	81.887	ENSCHIG00000024290	USB1	99	81.887	Capra_hircus
ENSCAFG00020009263	USB1	99	83.459	ENSTSYG00000006997	USB1	99	83.459	Carlito_syrichta
ENSCAFG00020009263	USB1	87	69.697	ENSCAPG00000009057	USB1	99	69.697	Cavia_aperea
ENSCAFG00020009263	USB1	99	79.401	ENSCPOG00000014325	USB1	99	79.401	Cavia_porcellus
ENSCAFG00020009263	USB1	99	79.487	ENSCCAG00000022132	USB1	99	80.586	Cebus_capucinus
ENSCAFG00020009263	USB1	99	79.853	ENSCATG00000032174	USB1	99	83.019	Cercocebus_atys
ENSCAFG00020009263	USB1	66	88.571	ENSCLAG00000007363	USB1	99	88.571	Chinchilla_lanigera
ENSCAFG00020009263	USB1	99	80.586	ENSCSAG00000004783	USB1	99	83.774	Chlorocebus_sabaeus
ENSCAFG00020009263	USB1	87	68.398	ENSCPBG00000026943	USB1	99	63.309	Chrysemys_picta_bellii
ENSCAFG00020009263	USB1	87	87.446	ENSCANG00000037135	USB1	99	82.642	Colobus_angolensis_palliatus
ENSCAFG00020009263	USB1	99	82.528	ENSCGRG00001011243	USB1	99	82.528	Cricetulus_griseus_chok1gshd
ENSCAFG00020009263	USB1	99	82.528	ENSCGRG00000013252	USB1	99	82.528	Cricetulus_griseus_crigri
ENSCAFG00020009263	USB1	98	46.350	ENSCSEG00000013881	usb1	99	46.350	Cynoglossus_semilaevis
ENSCAFG00020009263	USB1	84	47.577	ENSCVAG00000009252	usb1	97	48.018	Cyprinodon_variegatus
ENSCAFG00020009263	USB1	84	51.121	ENSDARG00000003841	usb1	99	46.350	Danio_rerio
ENSCAFG00020009263	USB1	99	76.923	ENSDORG00000001888	Usb1	99	79.623	Dipodomys_ordii
ENSCAFG00020009263	USB1	78	39.906	FBgn0037713	CG16790	97	37.313	Drosophila_melanogaster
ENSCAFG00020009263	USB1	99	67.293	ENSETEG00000019682	USB1	99	67.293	Echinops_telfairi
ENSCAFG00020009263	USB1	83	50.000	ENSEBUG00000005889	usb1	78	50.000	Eptatretus_burgeri
ENSCAFG00020009263	USB1	99	82.463	ENSEASG00005005484	USB1	99	82.463	Equus_asinus_asinus
ENSCAFG00020009263	USB1	99	82.836	ENSECAG00000019493	USB1	91	82.836	Equus_caballus
ENSCAFG00020009263	USB1	66	78.286	ENSEEUG00000000154	USB1	66	78.286	Erinaceus_europaeus
ENSCAFG00020009263	USB1	85	48.458	ENSELUG00000010974	usb1	83	48.458	Esox_lucius
ENSCAFG00020009263	USB1	99	81.159	ENSFCAG00000002693	USB1	99	86.090	Felis_catus
ENSCAFG00020009263	USB1	84	65.919	ENSFALG00000006876	USB1	99	60.595	Ficedula_albicollis
ENSCAFG00020009263	USB1	99	82.331	ENSFDAG00000010052	USB1	99	82.331	Fukomys_damarensis
ENSCAFG00020009263	USB1	85	47.107	ENSFHEG00000012334	usb1	96	47.521	Fundulus_heteroclitus
ENSCAFG00020009263	USB1	83	50.450	ENSGMOG00000004228	usb1	99	50.450	Gadus_morhua
ENSCAFG00020009263	USB1	83	67.713	ENSGALG00000035604	USB1	99	62.782	Gallus_gallus
ENSCAFG00020009263	USB1	98	48.175	ENSGAFG00000021890	usb1	99	48.175	Gambusia_affinis
ENSCAFG00020009263	USB1	84	51.121	ENSGACG00000003257	usb1	99	46.909	Gasterosteus_aculeatus
ENSCAFG00020009263	USB1	99	63.370	ENSGAGG00000022572	USB1	99	63.370	Gopherus_agassizii
ENSCAFG00020009263	USB1	99	79.487	ENSGGOG00000017147	USB1	99	80.586	Gorilla_gorilla
ENSCAFG00020009263	USB1	85	53.540	ENSHBUG00000009823	usb1	99	47.842	Haplochromis_burtoni
ENSCAFG00020009263	USB1	99	82.331	ENSHGLG00000016078	USB1	97	82.331	Heterocephalus_glaber_female
ENSCAFG00020009263	USB1	99	82.331	ENSHGLG00100005562	USB1	97	82.331	Heterocephalus_glaber_male
ENSCAFG00020009263	USB1	81	53.241	ENSHCOG00000015633	usb1	99	50.000	Hippocampus_comes
ENSCAFG00020009263	USB1	84	53.363	ENSIPUG00000008601	usb1	77	53.363	Ictalurus_punctatus
ENSCAFG00020009263	USB1	99	78.648	ENSSTOG00000007548	USB1	99	80.882	Ictidomys_tridecemlineatus
ENSCAFG00020009263	USB1	99	81.685	ENSJJAG00000021859	Usb1	99	81.685	Jaculus_jaculus
ENSCAFG00020009263	USB1	85	51.770	ENSKMAG00000007200	usb1	98	47.312	Kryptolebias_marmoratus
ENSCAFG00020009263	USB1	78	48.077	ENSLBEG00000008452	usb1	70	48.077	Labrus_bergylta
ENSCAFG00020009263	USB1	77	61.244	ENSLACG00000000105	USB1	72	61.244	Latimeria_chalumnae
ENSCAFG00020009263	USB1	86	56.769	ENSLOCG00000000465	usb1	99	50.714	Lepisosteus_oculatus
ENSCAFG00020009263	USB1	99	62.454	ENSLAFG00000002267	USB1	99	62.825	Loxodonta_africana
ENSCAFG00020009263	USB1	99	80.220	ENSMFAG00000003926	USB1	99	83.396	Macaca_fascicularis
ENSCAFG00020009263	USB1	99	80.220	ENSMMUG00000022669	USB1	99	83.396	Macaca_mulatta
ENSCAFG00020009263	USB1	99	79.853	ENSMNEG00000042487	USB1	99	83.019	Macaca_nemestrina
ENSCAFG00020009263	USB1	99	80.220	ENSMLEG00000028756	USB1	99	83.396	Mandrillus_leucophaeus
ENSCAFG00020009263	USB1	98	47.101	ENSMAMG00000015092	usb1	99	47.101	Mastacembelus_armatus
ENSCAFG00020009263	USB1	84	53.363	ENSMZEG00005010008	usb1	99	47.842	Maylandia_zebra
ENSCAFG00020009263	USB1	99	80.224	ENSMAUG00000007832	Usb1	99	80.224	Mesocricetus_auratus
ENSCAFG00020009263	USB1	99	83.396	ENSMICG00000004900	USB1	99	83.396	Microcebus_murinus
ENSCAFG00020009263	USB1	99	78.810	ENSMOCG00000022647	Usb1	99	78.810	Microtus_ochrogaster
ENSCAFG00020009263	USB1	85	51.101	ENSMMOG00000000490	usb1	99	49.231	Mola_mola
ENSCAFG00020009263	USB1	82	72.811	ENSMODG00000014067	USB1	99	67.164	Monodelphis_domestica
ENSCAFG00020009263	USB1	85	53.982	ENSMALG00000005930	usb1	99	48.214	Monopterus_albus
ENSCAFG00020009263	USB1	99	79.104	MGP_CAROLIEiJ_G0031421	Usb1	100	80.531	Mus_caroli
ENSCAFG00020009263	USB1	99	79.478	ENSMUSG00000031792	Usb1	100	81.416	Mus_musculus
ENSCAFG00020009263	USB1	99	75.273	MGP_PahariEiJ_G0023019	Usb1	100	82.051	Mus_pahari
ENSCAFG00020009263	USB1	99	79.104	MGP_SPRETEiJ_G0032540	Usb1	99	79.104	Mus_spretus
ENSCAFG00020009263	USB1	99	85.075	ENSMPUG00000004684	USB1	96	85.821	Mustela_putorius_furo
ENSCAFG00020009263	USB1	86	88.261	ENSMLUG00000007400	USB1	99	88.261	Myotis_lucifugus
ENSCAFG00020009263	USB1	99	83.643	ENSNGAG00000009703	Usb1	99	83.643	Nannospalax_galili
ENSCAFG00020009263	USB1	86	47.826	ENSNBRG00000008747	usb1	99	52.113	Neolamprologus_brichardi
ENSCAFG00020009263	USB1	94	78.764	ENSNLEG00000003340	USB1	100	82.072	Nomascus_leucogenys
ENSCAFG00020009263	USB1	62	87.500	ENSOPRG00000011803	USB1	72	87.500	Ochotona_princeps
ENSCAFG00020009263	USB1	99	80.970	ENSODEG00000016214	USB1	99	80.970	Octodon_degus
ENSCAFG00020009263	USB1	98	48.014	ENSONIG00000011063	usb1	99	48.014	Oreochromis_niloticus
ENSCAFG00020009263	USB1	89	70.168	ENSOANG00000012118	USB1	98	70.168	Ornithorhynchus_anatinus
ENSCAFG00020009263	USB1	84	49.776	ENSORLG00000012479	usb1	99	45.185	Oryzias_latipes
ENSCAFG00020009263	USB1	84	49.776	ENSORLG00020018671	usb1	99	45.556	Oryzias_latipes_hni
ENSCAFG00020009263	USB1	84	49.776	ENSORLG00015009679	usb1	99	46.296	Oryzias_latipes_hsok
ENSCAFG00020009263	USB1	84	50.224	ENSOMEG00000012930	usb1	99	46.350	Oryzias_melastigma
ENSCAFG00020009263	USB1	99	76.226	ENSOGAG00000003273	USB1	99	76.226	Otolemur_garnettii
ENSCAFG00020009263	USB1	87	86.580	ENSOARG00000001107	USB1	89	86.580	Ovis_aries
ENSCAFG00020009263	USB1	99	79.121	ENSPPAG00000042137	USB1	99	80.220	Pan_paniscus
ENSCAFG00020009263	USB1	99	86.090	ENSPPRG00000024797	USB1	99	86.090	Panthera_pardus
ENSCAFG00020009263	USB1	99	80.797	ENSPTIG00000007506	USB1	99	85.714	Panthera_tigris_altaica
ENSCAFG00020009263	USB1	99	72.894	ENSPTRG00000008172	USB1	99	87.793	Pan_troglodytes
ENSCAFG00020009263	USB1	99	80.220	ENSPANG00000025138	USB1	99	83.396	Papio_anubis
ENSCAFG00020009263	USB1	96	49.804	ENSPKIG00000015109	usb1	84	49.804	Paramormyrops_kingsleyae
ENSCAFG00020009263	USB1	84	53.571	ENSPSIG00000004305	USB1	99	53.571	Pelodiscus_sinensis
ENSCAFG00020009263	USB1	85	51.111	ENSPMGG00000017725	usb1	98	48.289	Periophthalmus_magnuspinnatus
ENSCAFG00020009263	USB1	99	79.487	ENSPEMG00000016183	Usb1	99	79.412	Peromyscus_maniculatus_bairdii
ENSCAFG00020009263	USB1	84	51.556	ENSPMAG00000000462	usb1	95	51.556	Petromyzon_marinus
ENSCAFG00020009263	USB1	98	48.364	ENSPFOG00000011130	usb1	99	48.364	Poecilia_formosa
ENSCAFG00020009263	USB1	98	47.636	ENSPLAG00000009820	usb1	99	47.636	Poecilia_latipinna
ENSCAFG00020009263	USB1	98	48.364	ENSPMEG00000006402	usb1	99	48.364	Poecilia_mexicana
ENSCAFG00020009263	USB1	85	49.174	ENSPREG00000001047	usb1	98	49.174	Poecilia_reticulata
ENSCAFG00020009263	USB1	95	76.245	ENSPPYG00000007401	USB1	100	79.447	Pongo_abelii
ENSCAFG00020009263	USB1	99	79.487	ENSPCOG00000022612	USB1	99	84.211	Propithecus_coquereli
ENSCAFG00020009263	USB1	99	80.000	ENSPVAG00000004613	USB1	99	80.000	Pteropus_vampyrus
ENSCAFG00020009263	USB1	85	53.540	ENSPNYG00000022262	usb1	99	48.561	Pundamilia_nyererei
ENSCAFG00020009263	USB1	84	52.018	ENSPNAG00000011736	usb1	76	52.018	Pygocentrus_nattereri
ENSCAFG00020009263	USB1	99	80.970	ENSRNOG00000013216	Usb1	99	80.970	Rattus_norvegicus
ENSCAFG00020009263	USB1	99	73.455	ENSRBIG00000044466	USB1	99	89.202	Rhinopithecus_bieti
ENSCAFG00020009263	USB1	99	79.636	ENSRROG00000029211	USB1	99	83.774	Rhinopithecus_roxellana
ENSCAFG00020009263	USB1	99	79.121	ENSSBOG00000029362	USB1	99	82.642	Saimiri_boliviensis_boliviensis
ENSCAFG00020009263	USB1	82	72.936	ENSSHAG00000006993	USB1	99	67.323	Sarcophilus_harrisii
ENSCAFG00020009263	USB1	85	56.828	ENSSFOG00015023663	usb1	91	49.306	Scleropages_formosus
ENSCAFG00020009263	USB1	97	47.810	ENSSMAG00000015834	usb1	99	46.416	Scophthalmus_maximus
ENSCAFG00020009263	USB1	85	54.667	ENSSDUG00000002949	usb1	99	50.187	Seriola_dumerili
ENSCAFG00020009263	USB1	84	54.709	ENSSLDG00000014174	usb1	99	49.286	Seriola_lalandi_dorsalis
ENSCAFG00020009263	USB1	80	68.545	ENSSPUG00000006741	USB1	99	68.545	Sphenodon_punctatus
ENSCAFG00020009263	USB1	85	52.655	ENSSPAG00000007484	usb1	88	47.860	Stegastes_partitus
ENSCAFG00020009263	USB1	99	81.343	ENSSSCG00000002807	USB1	99	81.343	Sus_scrofa
ENSCAFG00020009263	USB1	79	68.095	ENSTGUG00000004792	USB1	99	61.509	Taeniopygia_guttata
ENSCAFG00020009263	USB1	98	46.442	ENSTRUG00000021069	usb1	99	46.442	Takifugu_rubripes
ENSCAFG00020009263	USB1	98	44.195	ENSTNIG00000000626	usb1	97	44.195	Tetraodon_nigroviridis
ENSCAFG00020009263	USB1	87	58.009	ENSTBEG00000001507	USB1	99	58.009	Tupaia_belangeri
ENSCAFG00020009263	USB1	99	84.477	ENSUAMG00000016823	USB1	99	86.765	Ursus_americanus
ENSCAFG00020009263	USB1	80	92.019	ENSUMAG00000021369	USB1	99	92.019	Ursus_maritimus
ENSCAFG00020009263	USB1	100	94.052	ENSVVUG00000023700	USB1	90	99.142	Vulpes_vulpes
ENSCAFG00020009263	USB1	82	56.621	ENSXETG00000013795	usb1	90	56.696	Xenopus_tropicalis
ENSCAFG00020009263	USB1	85	51.542	ENSXMAG00000024687	usb1	80	48.980	Xiphophorus_maculatus