EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCAFG00020009770 (Gene tree)
Gene ID: 112677544
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Canis_lupus_dingo
Status: putative
Strand: Plus strand
Length: 240979 bases
Position: chrQKWQ01001968.1:14766955-15007933
Accession: 112677544
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00020012154	EST1	PF10374.9	3.6e-15	1	1
ENSCAFP00020012154	EST1_DNA_bind	PF10373.9	1.3e-60	1	1
ENSCAFP00020012154	PIN_4	PF13638.6	4.7e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00020014019	SMG6-201	4239	-	ENSCAFP00020012154	1412 (aa)	XP_025331890	UPI0002258029

Gene Model

Click here to download ENSCAFG00020009770's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00020009770's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00020009770	SMG6	100	92.741	ENSG00000070366	SMG6	100	97.065	Homo_sapiens
ENSCAFG00020009770	SMG6	83	55.373	ENSAPOG00000019448	smg6	74	55.451	Acanthochromis_polyacanthus
ENSCAFG00020009770	SMG6	100	96.822	ENSAMEG00000007632	SMG6	100	96.822	Ailuropoda_melanoleuca
ENSCAFG00020009770	SMG6	83	55.197	ENSAOCG00000002630	smg6	74	55.234	Amphiprion_ocellaris
ENSCAFG00020009770	SMG6	83	55.354	ENSAPEG00000019101	smg6	74	55.391	Amphiprion_percula
ENSCAFG00020009770	SMG6	87	53.783	ENSATEG00000006483	smg6	76	53.788	Anabas_testudineus
ENSCAFG00020009770	SMG6	87	57.604	ENSACAG00000011783	SMG6	99	58.596	Anolis_carolinensis
ENSCAFG00020009770	SMG6	100	92.812	ENSANAG00000035760	SMG6	100	92.812	Aotus_nancymaae
ENSCAFG00020009770	SMG6	72	59.631	ENSACLG00000005288	smg6	80	55.738	Astatotilapia_calliptera
ENSCAFG00020009770	SMG6	72	62.368	ENSAMXG00000017326	smg6	98	51.291	Astyanax_mexicanus
ENSCAFG00020009770	SMG6	100	94.480	ENSBTAG00000000267	SMG6	100	94.480	Bos_taurus
ENSCAFG00020009770	SMG6	100	92.600	ENSCJAG00000001820	SMG6	100	92.600	Callithrix_jacchus
ENSCAFG00020009770	SMG6	100	100.000	ENSCAFG00000019260	SMG6	100	100.000	Canis_familiaris
ENSCAFG00020009770	SMG6	100	93.984	ENSCHIG00000021998	SMG6	100	93.984	Capra_hircus
ENSCAFG00020009770	SMG6	100	92.953	ENSTSYG00000003406	SMG6	100	97.260	Carlito_syrichta
ENSCAFG00020009770	SMG6	98	77.361	ENSCAPG00000016197	SMG6	99	82.436	Cavia_aperea
ENSCAFG00020009770	SMG6	100	90.634	ENSCPOG00000014878	SMG6	100	90.634	Cavia_porcellus
ENSCAFG00020009770	SMG6	100	92.882	ENSCCAG00000035801	SMG6	100	92.882	Cebus_capucinus
ENSCAFG00020009770	SMG6	100	92.953	ENSCATG00000031956	SMG6	100	92.953	Cercocebus_atys
ENSCAFG00020009770	SMG6	100	92.107	ENSCLAG00000006748	SMG6	100	92.107	Chinchilla_lanigera
ENSCAFG00020009770	SMG6	100	93.376	ENSCSAG00000013800	SMG6	100	93.376	Chlorocebus_sabaeus
ENSCAFG00020009770	SMG6	52	95.522	ENSCHOG00000005024	-	66	95.522	Choloepus_hoffmanni
ENSCAFG00020009770	SMG6	100	72.847	ENSCPBG00000020369	SMG6	100	73.403	Chrysemys_picta_bellii
ENSCAFG00020009770	SMG6	98	93.285	ENSCANG00000031764	SMG6	100	96.673	Colobus_angolensis_palliatus
ENSCAFG00020009770	SMG6	55	87.933	ENSCGRG00001019595	Smg6	97	87.933	Cricetulus_griseus_chok1gshd
ENSCAFG00020009770	SMG6	98	84.838	ENSCGRG00000007782	Smg6	99	84.982	Cricetulus_griseus_crigri
ENSCAFG00020009770	SMG6	86	54.273	ENSCSEG00000012757	smg6	81	54.328	Cynoglossus_semilaevis
ENSCAFG00020009770	SMG6	72	57.713	ENSCVAG00000012789	smg6	74	54.239	Cyprinodon_variegatus
ENSCAFG00020009770	SMG6	100	50.336	ENSDARG00000100481	smg6	89	55.687	Danio_rerio
ENSCAFG00020009770	SMG6	100	93.094	ENSDNOG00000048283	SMG6	100	93.094	Dasypus_novemcinctus
ENSCAFG00020009770	SMG6	100	88.912	ENSDORG00000016614	Smg6	94	96.847	Dipodomys_ordii
ENSCAFG00020009770	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSCAFG00020009770	SMG6	69	52.737	ENSEBUG00000005059	smg6	71	50.048	Eptatretus_burgeri
ENSCAFG00020009770	SMG6	99	95.748	ENSEASG00005009318	SMG6	99	95.748	Equus_asinus_asinus
ENSCAFG00020009770	SMG6	99	95.535	ENSECAG00000006519	SMG6	99	95.535	Equus_caballus
ENSCAFG00020009770	SMG6	100	83.227	ENSEEUG00000003493	SMG6	100	83.227	Erinaceus_europaeus
ENSCAFG00020009770	SMG6	72	60.278	ENSELUG00000005934	smg6	67	56.477	Esox_lucius
ENSCAFG00020009770	SMG6	100	97.240	ENSFCAG00000028817	SMG6	100	97.240	Felis_catus
ENSCAFG00020009770	SMG6	98	72.682	ENSFALG00000006538	SMG6	99	72.753	Ficedula_albicollis
ENSCAFG00020009770	SMG6	100	91.966	ENSFDAG00000015106	SMG6	100	91.966	Fukomys_damarensis
ENSCAFG00020009770	SMG6	83	53.001	ENSFHEG00000013282	smg6	75	53.396	Fundulus_heteroclitus
ENSCAFG00020009770	SMG6	53	69.159	ENSGMOG00000019077	smg6	58	69.159	Gadus_morhua
ENSCAFG00020009770	SMG6	100	72.050	ENSGALG00000003108	SMG6	98	72.268	Gallus_gallus
ENSCAFG00020009770	SMG6	83	53.840	ENSGAFG00000000379	smg6	74	54.082	Gambusia_affinis
ENSCAFG00020009770	SMG6	91	53.949	ENSGACG00000020521	smg6	99	53.675	Gasterosteus_aculeatus
ENSCAFG00020009770	SMG6	98	72.650	ENSGAGG00000025617	SMG6	99	73.219	Gopherus_agassizii
ENSCAFG00020009770	SMG6	100	93.658	ENSGGOG00000017156	SMG6	100	93.658	Gorilla_gorilla
ENSCAFG00020009770	SMG6	83	54.581	ENSHBUG00000021311	smg6	74	55.816	Haplochromis_burtoni
ENSCAFG00020009770	SMG6	100	91.626	ENSHGLG00000012882	SMG6	100	91.626	Heterocephalus_glaber_female
ENSCAFG00020009770	SMG6	100	91.696	ENSHGLG00100017815	SMG6	100	91.696	Heterocephalus_glaber_male
ENSCAFG00020009770	SMG6	72	59.312	ENSHCOG00000008761	smg6	97	53.777	Hippocampus_comes
ENSCAFG00020009770	SMG6	83	55.547	ENSIPUG00000012493	smg6	81	53.438	Ictalurus_punctatus
ENSCAFG00020009770	SMG6	100	93.583	ENSSTOG00000028127	SMG6	100	93.583	Ictidomys_tridecemlineatus
ENSCAFG00020009770	SMG6	79	89.107	ENSJJAG00000015367	Smg6	95	87.164	Jaculus_jaculus
ENSCAFG00020009770	SMG6	88	53.206	ENSKMAG00000000279	smg6	79	53.418	Kryptolebias_marmoratus
ENSCAFG00020009770	SMG6	83	54.248	ENSLBEG00000002184	smg6	74	54.574	Labrus_bergylta
ENSCAFG00020009770	SMG6	55	57.973	ENSLACG00000000806	-	98	58.714	Latimeria_chalumnae
ENSCAFG00020009770	SMG6	73	65.388	ENSLOCG00000006448	smg6	99	54.539	Lepisosteus_oculatus
ENSCAFG00020009770	SMG6	100	93.023	ENSLAFG00000001261	SMG6	100	93.023	Loxodonta_africana
ENSCAFG00020009770	SMG6	100	93.517	ENSMFAG00000003394	SMG6	100	93.517	Macaca_fascicularis
ENSCAFG00020009770	SMG6	100	93.446	ENSMMUG00000023161	SMG6	100	93.446	Macaca_mulatta
ENSCAFG00020009770	SMG6	100	88.545	ENSMNEG00000044592	SMG6	100	88.545	Macaca_nemestrina
ENSCAFG00020009770	SMG6	93	96.805	ENSMLEG00000029353	SMG6	99	96.805	Mandrillus_leucophaeus
ENSCAFG00020009770	SMG6	83	56.113	ENSMAMG00000020119	smg6	79	56.279	Mastacembelus_armatus
ENSCAFG00020009770	SMG6	72	59.631	ENSMZEG00005024736	smg6	74	55.625	Maylandia_zebra
ENSCAFG00020009770	SMG6	73	66.855	ENSMGAG00000005401	-	99	66.855	Meleagris_gallopavo
ENSCAFG00020009770	SMG6	100	94.785	ENSMICG00000012913	SMG6	100	94.785	Microcebus_murinus
ENSCAFG00020009770	SMG6	100	48.101	ENSMMOG00000010883	smg6	100	48.093	Mola_mola
ENSCAFG00020009770	SMG6	100	86.146	ENSMODG00000010622	SMG6	100	86.146	Monodelphis_domestica
ENSCAFG00020009770	SMG6	83	55.102	ENSMALG00000001106	smg6	73	55.694	Monopterus_albus
ENSCAFG00020009770	SMG6	100	91.191	MGP_CAROLIEiJ_G0016729	Smg6	100	91.191	Mus_caroli
ENSCAFG00020009770	SMG6	100	90.909	ENSMUSG00000038290	Smg6	100	90.909	Mus_musculus
ENSCAFG00020009770	SMG6	100	90.691	MGP_PahariEiJ_G0017866	Smg6	100	90.691	Mus_pahari
ENSCAFG00020009770	SMG6	100	90.839	MGP_SPRETEiJ_G0017572	Smg6	100	90.839	Mus_spretus
ENSCAFG00020009770	SMG6	100	96.815	ENSMPUG00000013046	SMG6	100	96.815	Mustela_putorius_furo
ENSCAFG00020009770	SMG6	100	94.551	ENSMLUG00000005739	SMG6	100	94.551	Myotis_lucifugus
ENSCAFG00020009770	SMG6	98	90.535	ENSNGAG00000007287	Smg6	99	90.535	Nannospalax_galili
ENSCAFG00020009770	SMG6	87	52.477	ENSNBRG00000009511	smg6	81	54.907	Neolamprologus_brichardi
ENSCAFG00020009770	SMG6	98	92.970	ENSNLEG00000017171	SMG6	100	97.260	Nomascus_leucogenys
ENSCAFG00020009770	SMG6	98	82.565	ENSMEUG00000015804	SMG6	99	82.565	Notamacropus_eugenii
ENSCAFG00020009770	SMG6	62	90.498	ENSOPRG00000000579	SMG6	85	97.895	Ochotona_princeps
ENSCAFG00020009770	SMG6	100	85.222	ENSODEG00000008038	SMG6	100	85.222	Octodon_degus
ENSCAFG00020009770	SMG6	100	51.037	ENSONIG00000005594	smg6	100	52.099	Oreochromis_niloticus
ENSCAFG00020009770	SMG6	100	92.822	ENSOCUG00000013018	SMG6	100	92.963	Oryctolagus_cuniculus
ENSCAFG00020009770	SMG6	83	54.137	ENSORLG00000003317	smg6	74	54.631	Oryzias_latipes
ENSCAFG00020009770	SMG6	83	54.301	ENSORLG00020015343	smg6	74	54.403	Oryzias_latipes_hni
ENSCAFG00020009770	SMG6	83	54.173	ENSORLG00015020454	smg6	74	54.760	Oryzias_latipes_hsok
ENSCAFG00020009770	SMG6	83	53.937	ENSOMEG00000010838	smg6	75	54.058	Oryzias_melastigma
ENSCAFG00020009770	SMG6	100	93.944	ENSOGAG00000004483	SMG6	100	93.944	Otolemur_garnettii
ENSCAFG00020009770	SMG6	100	92.449	ENSOARG00000015076	SMG6	100	93.922	Ovis_aries
ENSCAFG00020009770	SMG6	100	93.517	ENSPPAG00000043296	SMG6	100	93.517	Pan_paniscus
ENSCAFG00020009770	SMG6	100	97.311	ENSPPRG00000014581	SMG6	100	97.311	Panthera_pardus
ENSCAFG00020009770	SMG6	98	97.252	ENSPTIG00000008925	SMG6	100	99.022	Panthera_tigris_altaica
ENSCAFG00020009770	SMG6	100	93.587	ENSPTRG00000008544	SMG6	100	97.065	Pan_troglodytes
ENSCAFG00020009770	SMG6	100	93.305	ENSPANG00000024588	SMG6	100	93.305	Papio_anubis
ENSCAFG00020009770	SMG6	89	71.261	ENSPSIG00000006660	SMG6	96	71.339	Pelodiscus_sinensis
ENSCAFG00020009770	SMG6	98	60.870	ENSPMGG00000000844	smg6	100	60.870	Periophthalmus_magnuspinnatus
ENSCAFG00020009770	SMG6	100	91.966	ENSPEMG00000020707	Smg6	100	91.966	Peromyscus_maniculatus_bairdii
ENSCAFG00020009770	SMG6	100	51.574	ENSPFOG00000012035	smg6	100	51.713	Poecilia_formosa
ENSCAFG00020009770	SMG6	83	54.517	ENSPLAG00000017660	smg6	74	54.445	Poecilia_latipinna
ENSCAFG00020009770	SMG6	77	56.752	ENSPMEG00000000258	smg6	74	54.760	Poecilia_mexicana
ENSCAFG00020009770	SMG6	83	54.281	ENSPREG00000010066	smg6	74	54.239	Poecilia_reticulata
ENSCAFG00020009770	SMG6	100	88.397	ENSPPYG00000007790	SMG6	100	88.397	Pongo_abelii
ENSCAFG00020009770	SMG6	100	88.654	ENSPCAG00000000552	SMG6	100	88.654	Procavia_capensis
ENSCAFG00020009770	SMG6	100	94.292	ENSPCOG00000020925	SMG6	100	94.292	Propithecus_coquereli
ENSCAFG00020009770	SMG6	86	96.552	ENSPVAG00000002159	SMG6	86	96.552	Pteropus_vampyrus
ENSCAFG00020009770	SMG6	83	55.897	ENSPNYG00000024151	smg6	79	57.615	Pundamilia_nyererei
ENSCAFG00020009770	SMG6	97	47.843	ENSPNAG00000015480	smg6	87	63.196	Pygocentrus_nattereri
ENSCAFG00020009770	SMG6	100	91.121	ENSRNOG00000003041	Smg6	100	91.121	Rattus_norvegicus
ENSCAFG00020009770	SMG6	100	93.376	ENSRBIG00000024746	SMG6	100	93.376	Rhinopithecus_bieti
ENSCAFG00020009770	SMG6	100	93.446	ENSRROG00000030423	SMG6	100	96.282	Rhinopithecus_roxellana
ENSCAFG00020009770	SMG6	100	92.882	ENSSBOG00000022518	SMG6	100	91.191	Saimiri_boliviensis_boliviensis
ENSCAFG00020009770	SMG6	99	85.336	ENSSHAG00000010045	SMG6	98	85.336	Sarcophilus_harrisii
ENSCAFG00020009770	SMG6	74	62.000	ENSSFOG00015005436	smg6	70	57.753	Scleropages_formosus
ENSCAFG00020009770	SMG6	88	53.812	ENSSMAG00000019777	smg6	78	53.150	Scophthalmus_maximus
ENSCAFG00020009770	SMG6	83	55.852	ENSSDUG00000016412	smg6	74	55.677	Seriola_dumerili
ENSCAFG00020009770	SMG6	80	55.012	ENSSLDG00000020747	smg6	77	54.849	Seriola_lalandi_dorsalis
ENSCAFG00020009770	SMG6	99	70.378	ENSSPUG00000007152	SMG6	99	70.308	Sphenodon_punctatus
ENSCAFG00020009770	SMG6	83	54.631	ENSSPAG00000015633	smg6	74	54.945	Stegastes_partitus
ENSCAFG00020009770	SMG6	100	94.625	ENSSSCG00000017826	SMG6	100	94.625	Sus_scrofa
ENSCAFG00020009770	SMG6	100	72.861	ENSTGUG00000005836	SMG6	100	73.001	Taeniopygia_guttata
ENSCAFG00020009770	SMG6	83	54.976	ENSTRUG00000000358	smg6	81	55.520	Takifugu_rubripes
ENSCAFG00020009770	SMG6	100	49.505	ENSTNIG00000016164	smg6	100	49.704	Tetraodon_nigroviridis
ENSCAFG00020009770	SMG6	100	88.584	ENSTBEG00000011424	SMG6	100	88.584	Tupaia_belangeri
ENSCAFG00020009770	SMG6	91	92.273	ENSTTRG00000001175	SMG6	91	92.273	Tursiops_truncatus
ENSCAFG00020009770	SMG6	100	96.963	ENSUAMG00000025152	SMG6	100	96.963	Ursus_americanus
ENSCAFG00020009770	SMG6	98	97.178	ENSUMAG00000009306	SMG6	100	97.178	Ursus_maritimus
ENSCAFG00020009770	SMG6	85	100.000	ENSVPAG00000000225	SMG6	88	100.000	Vicugna_pacos
ENSCAFG00020009770	SMG6	100	99.575	ENSVVUG00000021727	SMG6	100	99.575	Vulpes_vulpes
ENSCAFG00020009770	SMG6	98	59.507	ENSXETG00000023799	SMG6	99	59.465	Xenopus_tropicalis
ENSCAFG00020009770	SMG6	83	54.976	ENSXCOG00000009867	smg6	74	54.960	Xiphophorus_couchianus
ENSCAFG00020009770	SMG6	83	54.389	ENSXMAG00000010321	smg6	74	54.317	Xiphophorus_maculatus