EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00020010823 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Canis_lupus_dingo
Status: putative
Strand: Minus strand
Length: 261 bases
Position: chrQKWQ01002043.1:22295350-22295610
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00020013502	LSM	PF01423.22	3.7e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00020015584	-	261	-	ENSCAFP00020013502	86 (aa)	-	UPI00027473B2

Gene Model

Click here to download ENSCAFG00020010823's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00020010823's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00020010823	-	77	50.000	ENSCAFG00020025902	LSM6	83	50.000
ENSCAFG00020010823	-	91	84.615	ENSCAFG00020013161	-	72	92.647

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00020010823	-	85	94.521	ENSG00000139343	SNRPF	85	91.781	Homo_sapiens
ENSCAFG00020010823	-	85	91.781	ENSAPOG00000003377	snrpf	55	91.549	Acanthochromis_polyacanthus
ENSCAFG00020010823	-	88	80.263	ENSAMEG00000018718	-	85	80.822	Ailuropoda_melanoleuca
ENSCAFG00020010823	-	85	94.521	ENSAMEG00000002166	-	84	94.366	Ailuropoda_melanoleuca
ENSCAFG00020010823	-	86	90.541	ENSACIG00000013216	snrpf	85	90.278	Amphilophus_citrinellus
ENSCAFG00020010823	-	86	90.541	ENSAOCG00000015108	snrpf	85	90.278	Amphiprion_ocellaris
ENSCAFG00020010823	-	86	90.541	ENSAPEG00000022022	snrpf	85	90.278	Amphiprion_percula
ENSCAFG00020010823	-	85	91.781	ENSATEG00000022625	snrpf	76	91.549	Anabas_testudineus
ENSCAFG00020010823	-	85	93.151	ENSACAG00000014073	SNRPF	82	92.958	Anolis_carolinensis
ENSCAFG00020010823	-	85	94.521	ENSANAG00000032845	SNRPF	85	91.781	Aotus_nancymaae
ENSCAFG00020010823	-	83	87.324	ENSANAG00000020297	-	63	86.957	Aotus_nancymaae
ENSCAFG00020010823	-	85	63.014	ENSANAG00000025860	-	79	63.380	Aotus_nancymaae
ENSCAFG00020010823	-	86	90.541	ENSACLG00000016066	snrpf	85	90.278	Astatotilapia_calliptera
ENSCAFG00020010823	-	85	89.041	ENSAMXG00000007421	snrpf	85	86.301	Astyanax_mexicanus
ENSCAFG00020010823	-	85	94.521	ENSBTAG00000016271	SNRPF	85	91.781	Bos_taurus
ENSCAFG00020010823	-	91	85.897	ENSBTAG00000050012	-	90	84.932	Bos_taurus
ENSCAFG00020010823	-	92	68.354	WBGene00004918	snr-5	84	70.423	Caenorhabditis_elegans
ENSCAFG00020010823	-	85	94.521	ENSCJAG00000002705	-	85	91.781	Callithrix_jacchus
ENSCAFG00020010823	-	100	100.000	ENSCAFG00000031151	-	100	100.000	Canis_familiaris
ENSCAFG00020010823	-	87	92.000	ENSCAFG00000006395	-	66	91.781	Canis_familiaris
ENSCAFG00020010823	-	85	83.562	ENSTSYG00000030635	-	84	80.822	Carlito_syrichta
ENSCAFG00020010823	-	95	87.805	ENSTSYG00000031636	-	61	88.889	Carlito_syrichta
ENSCAFG00020010823	-	85	87.838	ENSTSYG00000036502	-	85	86.486	Carlito_syrichta
ENSCAFG00020010823	-	85	94.521	ENSCAPG00000007242	SNRPF	84	94.366	Cavia_aperea
ENSCAFG00020010823	-	85	94.521	ENSCPOG00000013898	SNRPF	85	91.781	Cavia_porcellus
ENSCAFG00020010823	-	85	91.781	ENSCCAG00000017356	-	85	91.781	Cebus_capucinus
ENSCAFG00020010823	-	100	83.721	ENSCCAG00000033627	-	57	84.932	Cebus_capucinus
ENSCAFG00020010823	-	85	94.521	ENSCCAG00000037378	-	85	91.781	Cebus_capucinus
ENSCAFG00020010823	-	85	94.521	ENSCLAG00000007200	SNRPF	85	91.781	Chinchilla_lanigera
ENSCAFG00020010823	-	87	92.000	ENSCSAG00000003602	-	59	91.781	Chlorocebus_sabaeus
ENSCAFG00020010823	-	74	90.625	ENSCHOG00000009392	SNRPF	100	90.625	Choloepus_hoffmanni
ENSCAFG00020010823	-	100	80.233	ENSCPBG00000001985	-	87	82.192	Chrysemys_picta_bellii
ENSCAFG00020010823	-	98	88.095	ENSCPBG00000024287	-	57	90.141	Chrysemys_picta_bellii
ENSCAFG00020010823	-	100	81.395	ENSCPBG00000026463	-	85	82.192	Chrysemys_picta_bellii
ENSCAFG00020010823	-	85	86.301	ENSCPBG00000006227	-	85	83.562	Chrysemys_picta_bellii
ENSCAFG00020010823	-	99	83.529	ENSCSAVG00000007498	-	82	84.722	Ciona_savignyi
ENSCAFG00020010823	-	85	94.521	ENSCGRG00001017100	-	85	91.781	Cricetulus_griseus_chok1gshd
ENSCAFG00020010823	-	87	85.333	ENSCGRG00001008965	-	57	84.932	Cricetulus_griseus_chok1gshd
ENSCAFG00020010823	-	93	86.250	ENSCGRG00000018878	-	91	84.932	Cricetulus_griseus_crigri
ENSCAFG00020010823	-	85	94.521	ENSCGRG00000000336	-	85	91.781	Cricetulus_griseus_crigri
ENSCAFG00020010823	-	85	90.411	ENSCSEG00000004748	snrpf	85	87.671	Cynoglossus_semilaevis
ENSCAFG00020010823	-	85	91.781	ENSCVAG00000000397	snrpf	56	91.549	Cyprinodon_variegatus
ENSCAFG00020010823	-	85	89.333	ENSDARG00000105037	snrpf	85	86.667	Danio_rerio
ENSCAFG00020010823	-	87	92.000	ENSDNOG00000048989	-	65	91.781	Dasypus_novemcinctus
ENSCAFG00020010823	-	84	79.167	ENSDNOG00000049373	-	61	80.000	Dasypus_novemcinctus
ENSCAFG00020010823	-	69	93.220	ENSDORG00000029740	-	70	92.982	Dipodomys_ordii
ENSCAFG00020010823	-	84	81.944	ENSDORG00000025351	-	100	81.944	Dipodomys_ordii
ENSCAFG00020010823	-	95	75.610	FBgn0000426	SmF	81	78.873	Drosophila_melanogaster
ENSCAFG00020010823	-	85	94.521	ENSETEG00000001558	-	85	91.781	Echinops_telfairi
ENSCAFG00020010823	-	93	72.500	ENSEBUG00000001793	-	72	80.597	Eptatretus_burgeri
ENSCAFG00020010823	-	87	92.000	ENSECAG00000019817	SNRPF	59	91.781	Equus_caballus
ENSCAFG00020010823	-	85	94.521	ENSEEUG00000013509	SNRPF	84	94.366	Erinaceus_europaeus
ENSCAFG00020010823	-	85	89.041	ENSELUG00000003121	RUXF	85	86.301	Esox_lucius
ENSCAFG00020010823	-	98	86.905	ENSELUG00000007737	RUXF	84	84.932	Esox_lucius
ENSCAFG00020010823	-	85	69.863	ENSFCAG00000021942	-	84	67.123	Felis_catus
ENSCAFG00020010823	-	98	71.429	ENSFCAG00000031148	-	72	69.231	Felis_catus
ENSCAFG00020010823	-	85	94.521	ENSFCAG00000029966	-	85	91.781	Felis_catus
ENSCAFG00020010823	-	85	94.521	ENSFALG00000010799	SNRPF	83	94.366	Ficedula_albicollis
ENSCAFG00020010823	-	85	94.521	ENSFDAG00000002831	-	85	91.781	Fukomys_damarensis
ENSCAFG00020010823	-	85	91.781	ENSFHEG00000003240	snrpf	62	91.549	Fundulus_heteroclitus
ENSCAFG00020010823	-	85	91.781	ENSGMOG00000007741	snrpf	84	91.549	Gadus_morhua
ENSCAFG00020010823	-	85	94.521	ENSGALG00000011409	SNRPF	85	91.781	Gallus_gallus
ENSCAFG00020010823	-	85	91.781	ENSGAFG00000016187	snrpf	82	91.549	Gambusia_affinis
ENSCAFG00020010823	-	85	90.411	ENSGACG00000020055	snrpf	84	90.141	Gasterosteus_aculeatus
ENSCAFG00020010823	-	86	89.189	ENSGAGG00000012945	-	67	86.301	Gopherus_agassizii
ENSCAFG00020010823	-	72	87.097	ENSGAGG00000020974	-	54	84.375	Gopherus_agassizii
ENSCAFG00020010823	-	92	84.810	ENSGAGG00000022991	-	78	87.879	Gopherus_agassizii
ENSCAFG00020010823	-	80	78.261	ENSGAGG00000014132	-	83	78.261	Gopherus_agassizii
ENSCAFG00020010823	-	70	86.667	ENSGAGG00000011163	-	82	91.489	Gopherus_agassizii
ENSCAFG00020010823	-	92	68.354	ENSGGOG00000039564	-	88	65.753	Gorilla_gorilla
ENSCAFG00020010823	-	85	94.521	ENSGGOG00000001127	-	85	93.056	Gorilla_gorilla
ENSCAFG00020010823	-	98	75.000	ENSGGOG00000039936	-	81	71.233	Gorilla_gorilla
ENSCAFG00020010823	-	85	94.521	ENSHGLG00000009108	SNRPF	85	91.781	Heterocephalus_glaber_female
ENSCAFG00020010823	-	85	93.151	ENSHGLG00000021172	-	85	90.411	Heterocephalus_glaber_female
ENSCAFG00020010823	-	85	94.521	ENSHGLG00100008103	-	84	94.366	Heterocephalus_glaber_male
ENSCAFG00020010823	-	85	93.151	ENSHGLG00100019596	-	85	90.411	Heterocephalus_glaber_male
ENSCAFG00020010823	-	73	80.000	ENSHCOG00000018663	snrpf	55	80.000	Hippocampus_comes
ENSCAFG00020010823	-	85	91.781	ENSIPUG00000018994	snrpf	85	90.278	Ictalurus_punctatus
ENSCAFG00020010823	-	85	94.521	ENSSTOG00000010434	-	85	91.781	Ictidomys_tridecemlineatus
ENSCAFG00020010823	-	100	79.070	ENSJJAG00000010502	-	86	81.944	Jaculus_jaculus
ENSCAFG00020010823	-	87	93.333	ENSJJAG00000011272	-	84	93.151	Jaculus_jaculus
ENSCAFG00020010823	-	77	89.394	ENSJJAG00000004828	-	82	92.453	Jaculus_jaculus
ENSCAFG00020010823	-	98	77.381	ENSJJAG00000004558	-	87	75.342	Jaculus_jaculus
ENSCAFG00020010823	-	87	89.333	ENSKMAG00000013566	snrpf	85	89.041	Kryptolebias_marmoratus
ENSCAFG00020010823	-	85	90.411	ENSLBEG00000008800	snrpf	85	87.671	Labrus_bergylta
ENSCAFG00020010823	-	85	94.521	ENSLACG00000002456	-	61	94.366	Latimeria_chalumnae
ENSCAFG00020010823	-	85	89.041	ENSLOCG00000015744	snrpf	85	86.301	Lepisosteus_oculatus
ENSCAFG00020010823	-	85	94.521	ENSLAFG00000017426	SNRPF	83	94.366	Loxodonta_africana
ENSCAFG00020010823	-	86	89.189	ENSMAMG00000016593	snrpf	85	88.889	Mastacembelus_armatus
ENSCAFG00020010823	-	86	90.541	ENSMZEG00005014701	snrpf	85	90.278	Maylandia_zebra
ENSCAFG00020010823	-	85	94.521	ENSMGAG00000011453	-	64	94.366	Meleagris_gallopavo
ENSCAFG00020010823	-	87	86.667	ENSMAUG00000008799	-	85	86.301	Mesocricetus_auratus
ENSCAFG00020010823	-	73	95.238	ENSMAUG00000016909	-	82	95.082	Mesocricetus_auratus
ENSCAFG00020010823	-	73	95.238	ENSMAUG00000019737	-	82	95.082	Mesocricetus_auratus
ENSCAFG00020010823	-	71	88.525	ENSMAUG00000010289	-	63	93.750	Mesocricetus_auratus
ENSCAFG00020010823	-	85	94.521	ENSMICG00000012153	-	85	91.781	Microcebus_murinus
ENSCAFG00020010823	-	87	85.333	ENSMICG00000030494	-	58	84.932	Microcebus_murinus
ENSCAFG00020010823	-	79	77.941	ENSMOCG00000020220	-	84	78.788	Microtus_ochrogaster
ENSCAFG00020010823	-	85	82.192	ENSMOCG00000022166	-	78	81.690	Microtus_ochrogaster
ENSCAFG00020010823	-	85	94.521	ENSMOCG00000020437	Snrpf	85	91.781	Microtus_ochrogaster
ENSCAFG00020010823	-	85	90.411	ENSMMOG00000007127	snrpf	83	90.141	Mola_mola
ENSCAFG00020010823	-	87	92.000	ENSMODG00000008091	SNRPF	64	91.781	Monodelphis_domestica
ENSCAFG00020010823	-	86	90.541	ENSMALG00000012328	snrpf	85	90.278	Monopterus_albus
ENSCAFG00020010823	-	85	94.521	MGP_CAROLIEiJ_G0015735	-	85	91.781	Mus_caroli
ENSCAFG00020010823	-	85	94.521	ENSMUSG00000020018	Snrpf	85	91.781	Mus_musculus
ENSCAFG00020010823	-	85	94.521	MGP_PahariEiJ_G0031350	Snrpf	85	91.781	Mus_pahari
ENSCAFG00020010823	-	85	94.521	MGP_SPRETEiJ_G0016553	Snrpf	85	91.781	Mus_spretus
ENSCAFG00020010823	-	87	92.000	ENSMPUG00000007176	-	65	91.781	Mustela_putorius_furo
ENSCAFG00020010823	-	85	94.521	ENSMLUG00000029201	-	69	91.781	Myotis_lucifugus
ENSCAFG00020010823	-	85	94.521	ENSMLUG00000027932	-	69	91.781	Myotis_lucifugus
ENSCAFG00020010823	-	85	94.521	ENSMLUG00000026149	-	69	91.781	Myotis_lucifugus
ENSCAFG00020010823	-	85	94.521	ENSMLUG00000013577	-	84	94.366	Myotis_lucifugus
ENSCAFG00020010823	-	95	79.268	ENSMLUG00000026269	-	69	75.342	Myotis_lucifugus
ENSCAFG00020010823	-	85	94.521	ENSNGAG00000024292	-	85	91.781	Nannospalax_galili
ENSCAFG00020010823	-	73	87.302	ENSNGAG00000005851	-	68	86.207	Nannospalax_galili
ENSCAFG00020010823	-	85	91.781	ENSNBRG00000011682	snrpf	72	91.549	Neolamprologus_brichardi
ENSCAFG00020010823	-	85	64.384	ENSMEUG00000000671	SNRPF	84	63.380	Notamacropus_eugenii
ENSCAFG00020010823	-	85	94.521	ENSODEG00000010328	-	85	93.056	Octodon_degus
ENSCAFG00020010823	-	85	94.521	ENSOCUG00000010925	SNRPF	65	91.781	Oryctolagus_cuniculus
ENSCAFG00020010823	-	85	89.041	ENSORLG00020008216	snrpf	83	88.732	Oryzias_latipes_hni
ENSCAFG00020010823	-	85	89.041	ENSORLG00015007418	snrpf	83	88.732	Oryzias_latipes_hsok
ENSCAFG00020010823	-	86	89.189	ENSOMEG00000003018	snrpf	85	88.889	Oryzias_melastigma
ENSCAFG00020010823	-	85	93.151	ENSOGAG00000030323	-	85	90.411	Otolemur_garnettii
ENSCAFG00020010823	-	87	92.000	ENSOARG00000011853	-	63	91.781	Ovis_aries
ENSCAFG00020010823	-	90	71.429	ENSPPAG00000037479	-	85	69.014	Pan_paniscus
ENSCAFG00020010823	-	98	75.000	ENSPPAG00000037544	-	81	71.233	Pan_paniscus
ENSCAFG00020010823	-	98	70.238	ENSPPRG00000007449	-	74	68.493	Panthera_pardus
ENSCAFG00020010823	-	85	94.521	ENSPPRG00000005875	-	85	91.781	Panthera_pardus
ENSCAFG00020010823	-	85	94.521	ENSPTIG00000007520	SNRPF	85	91.781	Panthera_tigris_altaica
ENSCAFG00020010823	-	98	72.619	ENSPTIG00000005117	-	87	68.493	Panthera_tigris_altaica
ENSCAFG00020010823	-	98	75.000	ENSPTRG00000043814	-	81	71.233	Pan_troglodytes
ENSCAFG00020010823	-	90	71.429	ENSPTRG00000047717	-	85	69.014	Pan_troglodytes
ENSCAFG00020010823	-	85	91.781	ENSPKIG00000014784	snrpf	78	91.549	Paramormyrops_kingsleyae
ENSCAFG00020010823	-	85	94.521	ENSPSIG00000016462	SNRPF	83	94.366	Pelodiscus_sinensis
ENSCAFG00020010823	-	85	90.411	ENSPMGG00000023548	snrpf	83	90.141	Periophthalmus_magnuspinnatus
ENSCAFG00020010823	-	85	94.521	ENSPEMG00000023326	Snrpf	85	91.781	Peromyscus_maniculatus_bairdii
ENSCAFG00020010823	-	86	90.541	ENSPLAG00000023932	snrpf	85	90.278	Poecilia_latipinna
ENSCAFG00020010823	-	86	90.541	ENSPMEG00000003377	snrpf	85	90.278	Poecilia_mexicana
ENSCAFG00020010823	-	86	90.541	ENSPREG00000022635	snrpf	83	90.278	Poecilia_reticulata
ENSCAFG00020010823	-	85	94.521	ENSPPYG00000004847	-	85	91.781	Pongo_abelii
ENSCAFG00020010823	-	85	94.521	ENSPCOG00000023833	-	85	91.781	Propithecus_coquereli
ENSCAFG00020010823	-	85	94.521	ENSPVAG00000009036	SNRPF	85	91.781	Pteropus_vampyrus
ENSCAFG00020010823	-	86	90.541	ENSPNYG00000021712	snrpf	85	90.278	Pundamilia_nyererei
ENSCAFG00020010823	-	86	89.189	ENSPNAG00000019117	snrpf	85	88.889	Pygocentrus_nattereri
ENSCAFG00020010823	-	85	94.521	ENSRNOG00000005556	Snrpf	85	91.781	Rattus_norvegicus
ENSCAFG00020010823	-	87	90.667	ENSRBIG00000030414	-	85	90.411	Rhinopithecus_bieti
ENSCAFG00020010823	-	87	90.667	ENSRROG00000021975	-	85	90.411	Rhinopithecus_roxellana
ENSCAFG00020010823	-	81	56.338	YPR182W	SMX3	83	56.338	Saccharomyces_cerevisiae
ENSCAFG00020010823	-	85	94.521	ENSSBOG00000036179	-	85	91.781	Saimiri_boliviensis_boliviensis
ENSCAFG00020010823	-	85	79.452	ENSSBOG00000032297	-	83	76.712	Saimiri_boliviensis_boliviensis
ENSCAFG00020010823	-	88	75.949	ENSSBOG00000027638	-	91	74.074	Saimiri_boliviensis_boliviensis
ENSCAFG00020010823	-	85	94.521	ENSSBOG00000012868	-	85	91.781	Saimiri_boliviensis_boliviensis
ENSCAFG00020010823	-	85	94.521	ENSSHAG00000012294	SNRPF	64	94.366	Sarcophilus_harrisii
ENSCAFG00020010823	-	73	90.476	ENSSFOG00015021523	snrpf	94	90.476	Scleropages_formosus
ENSCAFG00020010823	-	85	90.411	ENSSMAG00000005533	snrpf	84	87.671	Scophthalmus_maximus
ENSCAFG00020010823	-	73	90.476	ENSSDUG00000016283	snrpf	75	90.476	Seriola_dumerili
ENSCAFG00020010823	-	85	91.781	ENSSLDG00000005119	snrpf	83	91.549	Seriola_lalandi_dorsalis
ENSCAFG00020010823	-	93	70.000	ENSSLDG00000003885	-	88	73.611	Seriola_lalandi_dorsalis
ENSCAFG00020010823	-	86	93.243	ENSSPUG00000014590	-	85	93.056	Sphenodon_punctatus
ENSCAFG00020010823	-	85	91.781	ENSSPAG00000003283	snrpf	81	91.549	Stegastes_partitus
ENSCAFG00020010823	-	85	94.521	ENSSSCG00000000895	SNRPF	85	91.781	Sus_scrofa
ENSCAFG00020010823	-	67	89.655	ENSTRUG00000014956	snrpf	81	89.286	Takifugu_rubripes
ENSCAFG00020010823	-	85	90.411	ENSTNIG00000012672	snrpf	85	87.671	Tetraodon_nigroviridis
ENSCAFG00020010823	-	85	64.384	ENSTTRG00000006070	SNRPF	85	61.644	Tursiops_truncatus
ENSCAFG00020010823	-	98	80.952	ENSUAMG00000001101	-	86	80.822	Ursus_americanus
ENSCAFG00020010823	-	85	94.521	ENSUAMG00000008176	-	85	91.781	Ursus_americanus
ENSCAFG00020010823	-	85	83.562	ENSUMAG00000006177	-	86	80.822	Ursus_maritimus
ENSCAFG00020010823	-	85	94.521	ENSUMAG00000003528	-	85	91.781	Ursus_maritimus
ENSCAFG00020010823	-	85	94.521	ENSVPAG00000008712	-	85	91.781	Vicugna_pacos
ENSCAFG00020010823	-	91	88.462	ENSVVUG00000023821	-	94	87.671	Vulpes_vulpes
ENSCAFG00020010823	-	85	69.333	ENSXETG00000021630	snrpf	84	68.493	Xenopus_tropicalis
ENSCAFG00020010823	-	85	91.781	ENSXCOG00000013860	snrpf	82	91.549	Xiphophorus_couchianus
ENSCAFG00020010823	-	86	90.541	ENSXMAG00000015448	snrpf	85	90.278	Xiphophorus_maculatus