EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00020012137 (Gene tree)
Gene ID: 112666743
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Canis_lupus_dingo
Status: putative
Strand: Minus strand
Length: 13184 bases
Position: chrQKWQ01000751.1:13687896-13701079
Accession: 112666743
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00020015100	LSM	PF01423.22	1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00020017553	LSM4-201	1172	XM_025458067	ENSCAFP00020015100	139 (aa)	XP_025313852	UPI0000001C1F

Gene Model

Click here to download ENSCAFG00020012137's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00020012137's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00020012137	LSM4	52	34.722	ENSCAFG00020007165	-	56	34.722

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00020012137	LSM4	100	100.000	ENSG00000130520	LSM4	100	100.000	Homo_sapiens
ENSCAFG00020012137	LSM4	99	73.510	ENSAPOG00000005643	lsm4	58	98.864	Acanthochromis_polyacanthus
ENSCAFG00020012137	LSM4	99	100.000	ENSAMEG00000011162	LSM4	95	100.000	Ailuropoda_melanoleuca
ENSCAFG00020012137	LSM4	99	77.622	ENSAOCG00000006414	lsm4	59	98.864	Amphiprion_ocellaris
ENSCAFG00020012137	LSM4	99	75.000	ENSAPEG00000006238	lsm4	59	98.864	Amphiprion_percula
ENSCAFG00020012137	LSM4	71	96.970	ENSATEG00000016559	lsm4	58	98.864	Anabas_testudineus
ENSCAFG00020012137	LSM4	100	100.000	ENSANAG00000034659	LSM4	100	100.000	Aotus_nancymaae
ENSCAFG00020012137	LSM4	79	83.871	ENSACLG00000022738	lsm4	60	98.864	Astatotilapia_calliptera
ENSCAFG00020012137	LSM4	99	84.058	ENSAMXG00000016932	lsm4	62	97.727	Astyanax_mexicanus
ENSCAFG00020012137	LSM4	100	100.000	ENSBTAG00000008578	LSM4	100	100.000	Bos_taurus
ENSCAFG00020012137	LSM4	60	75.904	WBGene00003078	lsm-4	67	75.904	Caenorhabditis_elegans
ENSCAFG00020012137	LSM4	100	100.000	ENSCJAG00000014171	LSM4	100	100.000	Callithrix_jacchus
ENSCAFG00020012137	LSM4	99	100.000	ENSCAFG00000014900	LSM4	90	100.000	Canis_familiaris
ENSCAFG00020012137	LSM4	99	100.000	ENSCHIG00000010928	LSM4	91	100.000	Capra_hircus
ENSCAFG00020012137	LSM4	100	99.281	ENSTSYG00000030906	LSM4	100	99.281	Carlito_syrichta
ENSCAFG00020012137	LSM4	100	97.842	ENSCAPG00000014140	LSM4	100	97.842	Cavia_aperea
ENSCAFG00020012137	LSM4	100	97.842	ENSCPOG00000024117	LSM4	100	97.842	Cavia_porcellus
ENSCAFG00020012137	LSM4	100	100.000	ENSCCAG00000036308	LSM4	100	100.000	Cebus_capucinus
ENSCAFG00020012137	LSM4	100	100.000	ENSCATG00000029311	LSM4	100	100.000	Cercocebus_atys
ENSCAFG00020012137	LSM4	100	96.403	ENSCLAG00000010828	LSM4	100	96.403	Chinchilla_lanigera
ENSCAFG00020012137	LSM4	100	100.000	ENSCSAG00000005370	LSM4	100	100.000	Chlorocebus_sabaeus
ENSCAFG00020012137	LSM4	100	82.014	ENSCPBG00000012925	LSM4	100	89.928	Chrysemys_picta_bellii
ENSCAFG00020012137	LSM4	62	91.860	ENSCING00000007519	-	69	92.045	Ciona_intestinalis
ENSCAFG00020012137	LSM4	62	93.023	ENSCSAVG00000008596	-	70	93.182	Ciona_savignyi
ENSCAFG00020012137	LSM4	100	100.000	ENSCANG00000043686	LSM4	100	100.000	Colobus_angolensis_palliatus
ENSCAFG00020012137	LSM4	100	95.683	ENSCGRG00001014436	Lsm4	100	95.683	Cricetulus_griseus_chok1gshd
ENSCAFG00020012137	LSM4	99	95.652	ENSCGRG00000009398	Lsm4	100	95.652	Cricetulus_griseus_crigri
ENSCAFG00020012137	LSM4	70	95.876	ENSCSEG00000016127	lsm4	62	97.727	Cynoglossus_semilaevis
ENSCAFG00020012137	LSM4	88	74.797	ENSCVAG00000021828	lsm4	56	97.260	Cyprinodon_variegatus
ENSCAFG00020012137	LSM4	99	77.536	ENSCVAG00000010601	lsm4	62	97.727	Cyprinodon_variegatus
ENSCAFG00020012137	LSM4	97	78.723	ENSDARG00000023852	lsm4	62	98.864	Danio_rerio
ENSCAFG00020012137	LSM4	100	97.842	ENSDORG00000024225	Lsm4	100	97.842	Dipodomys_ordii
ENSCAFG00020012137	LSM4	70	81.443	FBgn0032240	CG17768	57	88.636	Drosophila_melanogaster
ENSCAFG00020012137	LSM4	89	98.387	ENSETEG00000007762	-	100	98.387	Echinops_telfairi
ENSCAFG00020012137	LSM4	54	93.333	ENSEBUG00000003639	-	53	88.750	Eptatretus_burgeri
ENSCAFG00020012137	LSM4	100	100.000	ENSECAG00000010141	LSM4	57	100.000	Equus_caballus
ENSCAFG00020012137	LSM4	95	84.328	ENSELUG00000012821	lsm4	66	98.851	Esox_lucius
ENSCAFG00020012137	LSM4	100	100.000	ENSFCAG00000040580	LSM4	100	100.000	Felis_catus
ENSCAFG00020012137	LSM4	99	81.159	ENSFALG00000009478	LSM4	99	89.855	Ficedula_albicollis
ENSCAFG00020012137	LSM4	99	97.101	ENSFDAG00000010124	LSM4	100	97.101	Fukomys_damarensis
ENSCAFG00020012137	LSM4	69	96.875	ENSGMOG00000007729	lsm4	59	98.851	Gadus_morhua
ENSCAFG00020012137	LSM4	100	81.295	ENSGALG00000003385	LSM4	100	89.928	Gallus_gallus
ENSCAFG00020012137	LSM4	79	83.065	ENSGAFG00000004903	lsm4	55	94.521	Gambusia_affinis
ENSCAFG00020012137	LSM4	68	97.895	ENSGACG00000008140	lsm4	59	98.864	Gasterosteus_aculeatus
ENSCAFG00020012137	LSM4	100	82.014	ENSGAGG00000017812	LSM4	100	89.928	Gopherus_agassizii
ENSCAFG00020012137	LSM4	100	100.000	ENSGGOG00000012914	-	100	100.000	Gorilla_gorilla
ENSCAFG00020012137	LSM4	100	97.122	ENSHGLG00000006568	LSM4	100	97.122	Heterocephalus_glaber_female
ENSCAFG00020012137	LSM4	67	100.000	ENSHGLG00100007894	LSM4	100	100.000	Heterocephalus_glaber_male
ENSCAFG00020012137	LSM4	99	77.372	ENSHCOG00000008819	lsm4	62	98.864	Hippocampus_comes
ENSCAFG00020012137	LSM4	99	84.058	ENSIPUG00000005368	Lsm4	62	98.864	Ictalurus_punctatus
ENSCAFG00020012137	LSM4	100	100.000	ENSSTOG00000016494	LSM4	100	100.000	Ictidomys_tridecemlineatus
ENSCAFG00020012137	LSM4	100	97.122	ENSJJAG00000017420	Lsm4	100	97.122	Jaculus_jaculus
ENSCAFG00020012137	LSM4	62	97.674	ENSKMAG00000005073	lsm4	61	97.727	Kryptolebias_marmoratus
ENSCAFG00020012137	LSM4	71	96.970	ENSLBEG00000027930	lsm4	59	98.864	Labrus_bergylta
ENSCAFG00020012137	LSM4	99	83.212	ENSLACG00000015861	LSM4	98	83.212	Latimeria_chalumnae
ENSCAFG00020012137	LSM4	93	83.721	ENSLOCG00000002025	lsm4	62	97.727	Lepisosteus_oculatus
ENSCAFG00020012137	LSM4	99	98.551	ENSLAFG00000017459	LSM4	99	98.551	Loxodonta_africana
ENSCAFG00020012137	LSM4	100	100.000	ENSMFAG00000031194	LSM4	100	100.000	Macaca_fascicularis
ENSCAFG00020012137	LSM4	100	100.000	ENSMMUG00000004405	LSM4	100	100.000	Macaca_mulatta
ENSCAFG00020012137	LSM4	100	100.000	ENSMNEG00000042899	LSM4	100	100.000	Macaca_nemestrina
ENSCAFG00020012137	LSM4	100	100.000	ENSMLEG00000027948	LSM4	100	100.000	Mandrillus_leucophaeus
ENSCAFG00020012137	LSM4	99	79.710	ENSMAMG00000006190	lsm4	62	98.864	Mastacembelus_armatus
ENSCAFG00020012137	LSM4	79	83.871	ENSMZEG00005016420	lsm4	60	98.864	Maylandia_zebra
ENSCAFG00020012137	LSM4	99	82.734	ENSMGAG00000004976	LSM4	99	89.855	Meleagris_gallopavo
ENSCAFG00020012137	LSM4	100	99.281	ENSMICG00000000222	LSM4	100	99.281	Microcebus_murinus
ENSCAFG00020012137	LSM4	100	96.403	ENSMOCG00000020861	Lsm4	100	96.403	Microtus_ochrogaster
ENSCAFG00020012137	LSM4	89	95.968	ENSMODG00000015044	-	100	95.968	Monodelphis_domestica
ENSCAFG00020012137	LSM4	99	77.143	ENSMALG00000018159	lsm4	62	97.727	Monopterus_albus
ENSCAFG00020012137	LSM4	100	96.403	MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	Mus_caroli
ENSCAFG00020012137	LSM4	100	96.403	ENSMUSG00000031848	Lsm4	100	96.403	Mus_musculus
ENSCAFG00020012137	LSM4	100	96.403	MGP_PahariEiJ_G0021623	Lsm4	100	96.403	Mus_pahari
ENSCAFG00020012137	LSM4	100	96.403	MGP_SPRETEiJ_G0032276	Lsm4	100	96.403	Mus_spretus
ENSCAFG00020012137	LSM4	100	100.000	ENSMPUG00000015589	LSM4	100	100.000	Mustela_putorius_furo
ENSCAFG00020012137	LSM4	99	100.000	ENSMLUG00000004010	LSM4	99	100.000	Myotis_lucifugus
ENSCAFG00020012137	LSM4	100	96.403	ENSNGAG00000008644	Lsm4	100	96.403	Nannospalax_galili
ENSCAFG00020012137	LSM4	71	96.939	ENSNBRG00000022150	lsm4	54	98.851	Neolamprologus_brichardi
ENSCAFG00020012137	LSM4	89	92.742	ENSMEUG00000013229	LSM4	100	92.742	Notamacropus_eugenii
ENSCAFG00020012137	LSM4	89	93.548	ENSOPRG00000005575	LSM4	100	83.065	Ochotona_princeps
ENSCAFG00020012137	LSM4	100	87.050	ENSODEG00000004519	-	100	74.820	Octodon_degus
ENSCAFG00020012137	LSM4	100	73.381	ENSODEG00000011712	-	100	73.381	Octodon_degus
ENSCAFG00020012137	LSM4	100	97.122	ENSODEG00000020549	-	100	97.122	Octodon_degus
ENSCAFG00020012137	LSM4	79	83.871	ENSONIG00000012724	lsm4	60	98.864	Oreochromis_niloticus
ENSCAFG00020012137	LSM4	63	93.407	ENSOANG00000007434	LSM4	78	93.407	Ornithorhynchus_anatinus
ENSCAFG00020012137	LSM4	99	85.106	ENSORLG00000008391	lsm4	61	97.727	Oryzias_latipes
ENSCAFG00020012137	LSM4	99	72.848	ENSORLG00020014829	lsm4	61	97.727	Oryzias_latipes_hni
ENSCAFG00020012137	LSM4	99	85.106	ENSORLG00015010205	lsm4	61	97.727	Oryzias_latipes_hsok
ENSCAFG00020012137	LSM4	100	83.453	ENSOMEG00000003606	lsm4	61	97.727	Oryzias_melastigma
ENSCAFG00020012137	LSM4	71	98.990	ENSOGAG00000027992	LSM4	60	100.000	Otolemur_garnettii
ENSCAFG00020012137	LSM4	86	100.000	ENSOARG00000012553	LSM4	94	100.000	Ovis_aries
ENSCAFG00020012137	LSM4	100	100.000	ENSPPAG00000044045	-	100	100.000	Pan_paniscus
ENSCAFG00020012137	LSM4	100	100.000	ENSPPRG00000018264	LSM4	100	100.000	Panthera_pardus
ENSCAFG00020012137	LSM4	99	100.000	ENSPTIG00000006306	LSM4	100	100.000	Panthera_tigris_altaica
ENSCAFG00020012137	LSM4	100	100.000	ENSPTRG00000031470	LSM4	100	100.000	Pan_troglodytes
ENSCAFG00020012137	LSM4	100	100.000	ENSPANG00000014399	LSM4	100	100.000	Papio_anubis
ENSCAFG00020012137	LSM4	99	81.752	ENSPKIG00000006154	lsm4	62	98.864	Paramormyrops_kingsleyae
ENSCAFG00020012137	LSM4	99	81.159	ENSPSIG00000012358	LSM4	100	89.855	Pelodiscus_sinensis
ENSCAFG00020012137	LSM4	100	96.403	ENSPEMG00000001358	Lsm4	100	96.403	Peromyscus_maniculatus_bairdii
ENSCAFG00020012137	LSM4	99	76.389	ENSPLAG00000016267	lsm4	62	98.864	Poecilia_latipinna
ENSCAFG00020012137	LSM4	98	78.417	ENSPMEG00000016378	lsm4	63	98.851	Poecilia_mexicana
ENSCAFG00020012137	LSM4	100	100.000	ENSPPYG00000009736	LSM4	100	100.000	Pongo_abelii
ENSCAFG00020012137	LSM4	89	98.387	ENSPCAG00000008513	LSM4	100	98.387	Procavia_capensis
ENSCAFG00020012137	LSM4	100	99.281	ENSPCOG00000019837	LSM4	100	99.281	Propithecus_coquereli
ENSCAFG00020012137	LSM4	100	100.000	ENSPVAG00000015383	LSM4	100	100.000	Pteropus_vampyrus
ENSCAFG00020012137	LSM4	79	83.871	ENSPNYG00000016794	lsm4	60	98.864	Pundamilia_nyererei
ENSCAFG00020012137	LSM4	96	83.582	ENSPNAG00000016598	lsm4	65	98.851	Pygocentrus_nattereri
ENSCAFG00020012137	LSM4	100	96.403	ENSRNOG00000019572	Lsm4	100	96.403	Rattus_norvegicus
ENSCAFG00020012137	LSM4	100	100.000	ENSRBIG00000024717	LSM4	100	100.000	Rhinopithecus_bieti
ENSCAFG00020012137	LSM4	100	100.000	ENSRROG00000045706	LSM4	100	100.000	Rhinopithecus_roxellana
ENSCAFG00020012137	LSM4	60	40.860	YER112W	LSM4	51	39.583	Saccharomyces_cerevisiae
ENSCAFG00020012137	LSM4	90	100.000	ENSSBOG00000022455	LSM4	100	100.000	Saimiri_boliviensis_boliviensis
ENSCAFG00020012137	LSM4	100	96.403	ENSSHAG00000011559	LSM4	100	96.403	Sarcophilus_harrisii
ENSCAFG00020012137	LSM4	99	80.292	ENSSFOG00015021067	lsm4	62	98.864	Scleropages_formosus
ENSCAFG00020012137	LSM4	99	71.831	ENSSMAG00000021020	lsm4	95	72.535	Scophthalmus_maximus
ENSCAFG00020012137	LSM4	71	96.970	ENSSDUG00000009588	lsm4	53	98.864	Seriola_dumerili
ENSCAFG00020012137	LSM4	71	96.970	ENSSLDG00000006827	lsm4	52	98.864	Seriola_lalandi_dorsalis
ENSCAFG00020012137	LSM4	63	98.851	ENSSPUG00000010166	LSM4	56	98.851	Sphenodon_punctatus
ENSCAFG00020012137	LSM4	99	73.510	ENSSPAG00000011615	lsm4	58	98.864	Stegastes_partitus
ENSCAFG00020012137	LSM4	100	100.000	ENSSSCG00000034314	LSM4	100	100.000	Sus_scrofa
ENSCAFG00020012137	LSM4	79	81.452	ENSTRUG00000021737	lsm4	62	96.591	Takifugu_rubripes
ENSCAFG00020012137	LSM4	99	80.714	ENSTNIG00000010191	lsm4	61	97.727	Tetraodon_nigroviridis
ENSCAFG00020012137	LSM4	99	100.000	ENSUAMG00000000665	LSM4	99	100.000	Ursus_americanus
ENSCAFG00020012137	LSM4	100	100.000	ENSUMAG00000009013	LSM4	100	100.000	Ursus_maritimus
ENSCAFG00020012137	LSM4	99	100.000	ENSVVUG00000008136	LSM4	71	100.000	Vulpes_vulpes
ENSCAFG00020012137	LSM4	100	91.367	ENSXETG00000024933	lsm4	100	89.209	Xenopus_tropicalis