EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCAFG00020012347 (Gene tree)
Gene ID: 112666765
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Canis_lupus_dingo
Status: putative
Strand: Plus strand
Length: 34956 bases
Position: chrQKWQ01000751.1:14136544-14171499
Accession: 112666765
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00020015362	UPF1_Zn_bind	PF09416.10	8.2e-75	1	1
ENSCAFP00020015362	ResIII	PF04851.15	2.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00020017848	UPF1-201	3711	-	ENSCAFP00020015362	1119 (aa)	XP_025313913	UPI00005A3BDA

Gene Model

Click here to download ENSCAFG00020012347's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00020012347's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00020012347	UPF1	100	99.643	ENSG00000005007	UPF1	100	99.643	Homo_sapiens
ENSCAFG00020012347	UPF1	100	91.370	ENSAPOG00000023773	upf1	100	91.459	Acanthochromis_polyacanthus
ENSCAFG00020012347	UPF1	100	92.685	ENSAPOG00000010916	-	100	92.685	Acanthochromis_polyacanthus
ENSCAFG00020012347	UPF1	100	97.705	ENSAMEG00000011474	UPF1	100	97.705	Ailuropoda_melanoleuca
ENSCAFG00020012347	UPF1	92	95.024	ENSACIG00000010985	-	100	95.122	Amphilophus_citrinellus
ENSCAFG00020012347	UPF1	100	91.200	ENSACIG00000019949	upf1	100	91.548	Amphilophus_citrinellus
ENSCAFG00020012347	UPF1	100	90.885	ENSAOCG00000018519	upf1	100	91.454	Amphiprion_ocellaris
ENSCAFG00020012347	UPF1	100	92.685	ENSAOCG00000006352	-	100	92.685	Amphiprion_ocellaris
ENSCAFG00020012347	UPF1	100	92.685	ENSAPEG00000006292	-	100	92.685	Amphiprion_percula
ENSCAFG00020012347	UPF1	100	90.885	ENSAPEG00000016344	upf1	100	91.454	Amphiprion_percula
ENSCAFG00020012347	UPF1	100	90.062	ENSATEG00000017867	upf1	100	90.853	Anabas_testudineus
ENSCAFG00020012347	UPF1	100	92.774	ENSATEG00000016606	-	100	92.774	Anabas_testudineus
ENSCAFG00020012347	UPF1	93	98.008	ENSAPLG00000009175	UPF1	100	98.008	Anas_platyrhynchos
ENSCAFG00020012347	UPF1	95	96.004	ENSANAG00000024107	UPF1	97	96.004	Aotus_nancymaae
ENSCAFG00020012347	UPF1	100	90.933	ENSACLG00000007181	upf1	100	91.281	Astatotilapia_calliptera
ENSCAFG00020012347	UPF1	100	92.417	ENSACLG00000022630	-	100	92.328	Astatotilapia_calliptera
ENSCAFG00020012347	UPF1	100	93.137	ENSAMXG00000042187	upf1	100	93.583	Astyanax_mexicanus
ENSCAFG00020012347	UPF1	100	98.584	ENSBTAG00000020922	UPF1	100	98.584	Bos_taurus
ENSCAFG00020012347	UPF1	89	50.940	WBGene00004880	smg-2	99	48.075	Caenorhabditis_elegans
ENSCAFG00020012347	UPF1	100	98.673	ENSCJAG00000019627	UPF1	100	98.673	Callithrix_jacchus
ENSCAFG00020012347	UPF1	100	99.027	ENSCAFG00000014578	UPF1	100	99.027	Canis_familiaris
ENSCAFG00020012347	UPF1	100	99.553	ENSCHIG00000011018	UPF1	100	99.553	Capra_hircus
ENSCAFG00020012347	UPF1	96	96.852	ENSTSYG00000008877	UPF1	99	96.852	Carlito_syrichta
ENSCAFG00020012347	UPF1	93	98.002	ENSCAPG00000005758	UPF1	95	98.002	Cavia_aperea
ENSCAFG00020012347	UPF1	100	95.763	ENSCPOG00000025463	UPF1	100	95.763	Cavia_porcellus
ENSCAFG00020012347	UPF1	100	99.643	ENSCCAG00000032175	UPF1	100	99.643	Cebus_capucinus
ENSCAFG00020012347	UPF1	93	98.574	ENSCATG00000040306	UPF1	98	98.574	Cercocebus_atys
ENSCAFG00020012347	UPF1	96	97.045	ENSCLAG00000004037	UPF1	99	98.573	Chinchilla_lanigera
ENSCAFG00020012347	UPF1	100	99.553	ENSCSAG00000005276	UPF1	100	99.553	Chlorocebus_sabaeus
ENSCAFG00020012347	UPF1	100	96.975	ENSCPBG00000012513	UPF1	100	96.975	Chrysemys_picta_bellii
ENSCAFG00020012347	UPF1	78	77.918	ENSCING00000021399	-	99	78.146	Ciona_intestinalis
ENSCAFG00020012347	UPF1	99	71.820	ENSCSAVG00000006533	-	99	71.908	Ciona_savignyi
ENSCAFG00020012347	UPF1	95	97.666	ENSCANG00000029819	UPF1	99	97.666	Colobus_angolensis_palliatus
ENSCAFG00020012347	UPF1	100	98.570	ENSCGRG00001021067	Upf1	100	98.570	Cricetulus_griseus_chok1gshd
ENSCAFG00020012347	UPF1	94	97.191	ENSCGRG00000013480	Upf1	99	97.191	Cricetulus_griseus_crigri
ENSCAFG00020012347	UPF1	100	86.173	ENSCSEG00000017239	upf1	100	86.262	Cynoglossus_semilaevis
ENSCAFG00020012347	UPF1	100	92.679	ENSCSEG00000016159	-	100	92.589	Cynoglossus_semilaevis
ENSCAFG00020012347	UPF1	100	92.328	ENSCVAG00000010561	upf1	100	92.239	Cyprinodon_variegatus
ENSCAFG00020012347	UPF1	100	92.959	ENSDARG00000016302	upf1	100	93.405	Danio_rerio
ENSCAFG00020012347	UPF1	95	94.678	ENSDORG00000009984	Upf1	95	95.722	Dipodomys_ordii
ENSCAFG00020012347	UPF1	85	70.868	FBgn0030354	Upf1	84	67.368	Drosophila_melanogaster
ENSCAFG00020012347	UPF1	55	84.951	ENSEBUG00000010069	upf1	96	85.113	Eptatretus_burgeri
ENSCAFG00020012347	UPF1	100	99.553	ENSEASG00005006549	UPF1	100	99.553	Equus_asinus_asinus
ENSCAFG00020012347	UPF1	100	99.553	ENSECAG00000010639	UPF1	100	99.553	Equus_caballus
ENSCAFG00020012347	UPF1	100	91.755	ENSELUG00000012916	-	100	91.674	Esox_lucius
ENSCAFG00020012347	UPF1	100	90.417	ENSELUG00000020917	upf1	100	90.683	Esox_lucius
ENSCAFG00020012347	UPF1	100	98.938	ENSFCAG00000009757	UPF1	100	98.938	Felis_catus
ENSCAFG00020012347	UPF1	96	96.849	ENSFALG00000009312	UPF1	99	96.849	Ficedula_albicollis
ENSCAFG00020012347	UPF1	97	95.967	ENSFDAG00000014816	UPF1	99	98.478	Fukomys_damarensis
ENSCAFG00020012347	UPF1	85	94.763	ENSFHEG00000016276	-	96	94.763	Fundulus_heteroclitus
ENSCAFG00020012347	UPF1	100	88.407	ENSFHEG00000006428	upf1	100	88.407	Fundulus_heteroclitus
ENSCAFG00020012347	UPF1	100	91.166	ENSGMOG00000007541	upf1	100	91.608	Gadus_morhua
ENSCAFG00020012347	UPF1	100	97.855	ENSGALG00000003220	UPF1	100	97.855	Gallus_gallus
ENSCAFG00020012347	UPF1	62	95.533	ENSGAFG00000015443	-	88	93.166	Gambusia_affinis
ENSCAFG00020012347	UPF1	100	92.232	ENSGAFG00000004831	upf1	100	92.143	Gambusia_affinis
ENSCAFG00020012347	UPF1	100	97.321	ENSGAGG00000022217	UPF1	100	97.321	Gopherus_agassizii
ENSCAFG00020012347	UPF1	93	99.808	ENSGGOG00000002608	UPF1	99	99.808	Gorilla_gorilla
ENSCAFG00020012347	UPF1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSCAFG00020012347	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSCAFG00020012347	UPF1	100	98.142	ENSHGLG00000010900	UPF1	100	98.142	Heterocephalus_glaber_female
ENSCAFG00020012347	UPF1	96	94.737	ENSHGLG00100005904	UPF1	99	94.737	Heterocephalus_glaber_male
ENSCAFG00020012347	UPF1	100	91.696	ENSHCOG00000008918	upf1	100	94.004	Hippocampus_comes
ENSCAFG00020012347	UPF1	100	93.583	ENSIPUG00000005108	UPF1	100	93.939	Ictalurus_punctatus
ENSCAFG00020012347	UPF1	100	99.464	ENSSTOG00000009196	UPF1	100	99.464	Ictidomys_tridecemlineatus
ENSCAFG00020012347	UPF1	100	97.168	ENSJJAG00000023151	Upf1	100	97.168	Jaculus_jaculus
ENSCAFG00020012347	UPF1	100	92.685	ENSKMAG00000004962	upf1	100	92.596	Kryptolebias_marmoratus
ENSCAFG00020012347	UPF1	100	89.427	ENSLBEG00000014862	upf1	100	90.573	Labrus_bergylta
ENSCAFG00020012347	UPF1	100	92.424	ENSLBEG00000027848	-	100	92.424	Labrus_bergylta
ENSCAFG00020012347	UPF1	62	97.418	ENSLACG00000008482	UPF1	100	97.418	Latimeria_chalumnae
ENSCAFG00020012347	UPF1	100	95.089	ENSLOCG00000002072	upf1	100	95.089	Lepisosteus_oculatus
ENSCAFG00020012347	UPF1	100	97.788	ENSLAFG00000014963	UPF1	100	97.788	Loxodonta_africana
ENSCAFG00020012347	UPF1	100	98.673	ENSMFAG00000037748	UPF1	100	98.673	Macaca_fascicularis
ENSCAFG00020012347	UPF1	100	98.673	ENSMMUG00000023286	UPF1	100	98.673	Macaca_mulatta
ENSCAFG00020012347	UPF1	100	98.673	ENSMNEG00000000046	UPF1	100	98.673	Macaca_nemestrina
ENSCAFG00020012347	UPF1	93	98.763	ENSMLEG00000028404	UPF1	99	98.763	Mandrillus_leucophaeus
ENSCAFG00020012347	UPF1	100	89.798	ENSMAMG00000006229	upf1	100	90.765	Mastacembelus_armatus
ENSCAFG00020012347	UPF1	100	91.800	ENSMAMG00000006231	-	100	92.246	Mastacembelus_armatus
ENSCAFG00020012347	UPF1	100	89.895	ENSMZEG00005003489	upf1	100	91.078	Maylandia_zebra
ENSCAFG00020012347	UPF1	100	92.417	ENSMZEG00005016386	-	100	92.328	Maylandia_zebra
ENSCAFG00020012347	UPF1	93	97.624	ENSMGAG00000004745	UPF1	100	97.624	Meleagris_gallopavo
ENSCAFG00020012347	UPF1	95	96.475	ENSMAUG00000011398	Upf1	97	96.475	Mesocricetus_auratus
ENSCAFG00020012347	UPF1	100	99.374	ENSMICG00000001659	UPF1	100	99.374	Microcebus_murinus
ENSCAFG00020012347	UPF1	100	97.522	ENSMOCG00000005699	Upf1	100	97.522	Microtus_ochrogaster
ENSCAFG00020012347	UPF1	93	92.536	ENSMMOG00000007537	-	99	92.632	Mola_mola
ENSCAFG00020012347	UPF1	100	90.617	ENSMMOG00000007881	upf1	100	91.071	Mola_mola
ENSCAFG00020012347	UPF1	100	97.264	ENSMODG00000003689	UPF1	100	97.264	Monodelphis_domestica
ENSCAFG00020012347	UPF1	100	91.474	ENSMALG00000018100	-	100	91.474	Monopterus_albus
ENSCAFG00020012347	UPF1	100	90.885	ENSMALG00000000144	upf1	100	91.153	Monopterus_albus
ENSCAFG00020012347	UPF1	100	98.481	MGP_CAROLIEiJ_G0031142	Upf1	100	98.481	Mus_caroli
ENSCAFG00020012347	UPF1	100	98.481	ENSMUSG00000058301	Upf1	100	98.481	Mus_musculus
ENSCAFG00020012347	UPF1	100	98.481	MGP_PahariEiJ_G0021607	Upf1	100	98.481	Mus_pahari
ENSCAFG00020012347	UPF1	100	98.481	MGP_SPRETEiJ_G0032260	Upf1	100	98.481	Mus_spretus
ENSCAFG00020012347	UPF1	100	100.000	ENSMPUG00000015516	UPF1	100	100.000	Mustela_putorius_furo
ENSCAFG00020012347	UPF1	99	99.552	ENSMLUG00000012122	UPF1	99	99.552	Myotis_lucifugus
ENSCAFG00020012347	UPF1	100	97.522	ENSNGAG00000024107	Upf1	100	97.522	Nannospalax_galili
ENSCAFG00020012347	UPF1	100	89.244	ENSNBRG00000000670	upf1	100	89.591	Neolamprologus_brichardi
ENSCAFG00020012347	UPF1	100	89.071	ENSNBRG00000022069	-	100	93.975	Neolamprologus_brichardi
ENSCAFG00020012347	UPF1	93	92.959	ENSNLEG00000006062	UPF1	99	92.959	Nomascus_leucogenys
ENSCAFG00020012347	UPF1	83	94.510	ENSMEUG00000014146	-	83	94.510	Notamacropus_eugenii
ENSCAFG00020012347	UPF1	93	91.731	ENSOPRG00000014018	UPF1	99	91.731	Ochotona_princeps
ENSCAFG00020012347	UPF1	100	96.726	ENSODEG00000012426	UPF1	100	96.726	Octodon_degus
ENSCAFG00020012347	UPF1	100	90.158	ENSONIG00000010452	upf1	100	91.343	Oreochromis_niloticus
ENSCAFG00020012347	UPF1	100	92.507	ENSONIG00000012729	-	100	92.417	Oreochromis_niloticus
ENSCAFG00020012347	UPF1	100	96.466	ENSOANG00000004568	UPF1	100	96.466	Ornithorhynchus_anatinus
ENSCAFG00020012347	UPF1	100	92.596	ENSORLG00000008453	upf1	100	92.596	Oryzias_latipes
ENSCAFG00020012347	UPF1	100	92.513	ENSORLG00020014758	upf1	100	92.513	Oryzias_latipes_hni
ENSCAFG00020012347	UPF1	100	92.513	ENSORLG00015010165	upf1	100	92.513	Oryzias_latipes_hsok
ENSCAFG00020012347	UPF1	100	92.685	ENSOMEG00000003665	upf1	100	92.596	Oryzias_melastigma
ENSCAFG00020012347	UPF1	100	99.732	ENSOGAG00000012866	UPF1	100	99.732	Otolemur_garnettii
ENSCAFG00020012347	UPF1	96	96.596	ENSOARG00000010739	UPF1	100	96.596	Ovis_aries
ENSCAFG00020012347	UPF1	95	97.666	ENSPPAG00000043884	UPF1	97	97.666	Pan_paniscus
ENSCAFG00020012347	UPF1	100	98.938	ENSPPRG00000023470	UPF1	100	98.938	Panthera_pardus
ENSCAFG00020012347	UPF1	93	97.793	ENSPTIG00000010159	UPF1	99	97.793	Panthera_tigris_altaica
ENSCAFG00020012347	UPF1	100	98.673	ENSPTRG00000010721	UPF1	100	98.673	Pan_troglodytes
ENSCAFG00020012347	UPF1	100	98.673	ENSPANG00000008847	UPF1	100	98.673	Papio_anubis
ENSCAFG00020012347	UPF1	91	94.829	ENSPKIG00000006069	upf1	99	92.344	Paramormyrops_kingsleyae
ENSCAFG00020012347	UPF1	68	98.039	ENSPSIG00000009491	UPF1	100	98.039	Pelodiscus_sinensis
ENSCAFG00020012347	UPF1	100	89.235	ENSPMGG00000017327	upf1	100	89.343	Periophthalmus_magnuspinnatus
ENSCAFG00020012347	UPF1	100	97.611	ENSPEMG00000001085	Upf1	100	97.611	Peromyscus_maniculatus_bairdii
ENSCAFG00020012347	UPF1	100	86.879	ENSPMAG00000001206	upf1	100	86.613	Petromyzon_marinus
ENSCAFG00020012347	UPF1	100	98.749	ENSPCIG00000006156	UPF1	100	98.749	Phascolarctos_cinereus
ENSCAFG00020012347	UPF1	100	92.321	ENSPLAG00000016232	-	100	92.232	Poecilia_latipinna
ENSCAFG00020012347	UPF1	100	89.381	ENSPLAG00000018155	-	100	89.292	Poecilia_latipinna
ENSCAFG00020012347	UPF1	100	92.239	ENSPMEG00000016319	-	100	92.150	Poecilia_mexicana
ENSCAFG00020012347	UPF1	100	89.929	ENSPMEG00000011443	-	100	89.840	Poecilia_mexicana
ENSCAFG00020012347	UPF1	100	92.143	ENSPREG00000011247	-	100	92.054	Poecilia_reticulata
ENSCAFG00020012347	UPF1	100	89.823	ENSPREG00000009940	upf1	100	89.823	Poecilia_reticulata
ENSCAFG00020012347	UPF1	100	93.717	ENSPPYG00000009752	UPF1	100	93.717	Pongo_abelii
ENSCAFG00020012347	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSCAFG00020012347	UPF1	100	98.584	ENSPCOG00000023813	UPF1	100	98.584	Propithecus_coquereli
ENSCAFG00020012347	UPF1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSCAFG00020012347	UPF1	100	92.417	ENSPNYG00000016731	-	100	92.328	Pundamilia_nyererei
ENSCAFG00020012347	UPF1	100	89.895	ENSPNYG00000003694	upf1	100	91.078	Pundamilia_nyererei
ENSCAFG00020012347	UPF1	100	93.137	ENSPNAG00000025614	upf1	100	93.583	Pygocentrus_nattereri
ENSCAFG00020012347	UPF1	100	98.481	ENSRNOG00000020134	Upf1	100	98.481	Rattus_norvegicus
ENSCAFG00020012347	UPF1	95	95.331	ENSRBIG00000013894	UPF1	98	99.671	Rhinopithecus_bieti
ENSCAFG00020012347	UPF1	95	97.666	ENSRROG00000040935	UPF1	98	99.671	Rhinopithecus_roxellana
ENSCAFG00020012347	UPF1	71	57.822	YMR080C	NAM7	82	57.822	Saccharomyces_cerevisiae
ENSCAFG00020012347	UPF1	96	96.501	ENSSBOG00000023632	UPF1	98	96.501	Saimiri_boliviensis_boliviensis
ENSCAFG00020012347	UPF1	93	98.006	ENSSHAG00000010499	UPF1	100	98.006	Sarcophilus_harrisii
ENSCAFG00020012347	UPF1	100	95.004	ENSSFOG00015021095	upf1	99	97.315	Scleropages_formosus
ENSCAFG00020012347	UPF1	100	89.075	ENSSMAG00000005055	upf1	100	89.877	Scophthalmus_maximus
ENSCAFG00020012347	UPF1	100	92.513	ENSSMAG00000021018	-	100	92.513	Scophthalmus_maximus
ENSCAFG00020012347	UPF1	100	92.781	ENSSDUG00000009629	-	100	92.781	Seriola_dumerili
ENSCAFG00020012347	UPF1	100	90.062	ENSSDUG00000013320	upf1	100	91.029	Seriola_dumerili
ENSCAFG00020012347	UPF1	100	90.861	ENSSLDG00000020868	upf1	100	91.320	Seriola_lalandi_dorsalis
ENSCAFG00020012347	UPF1	100	92.781	ENSSLDG00000006878	-	100	92.781	Seriola_lalandi_dorsalis
ENSCAFG00020012347	UPF1	100	97.230	ENSSPUG00000010538	UPF1	100	97.230	Sphenodon_punctatus
ENSCAFG00020012347	UPF1	100	89.375	ENSSPAG00000000003	upf1	100	89.314	Stegastes_partitus
ENSCAFG00020012347	UPF1	100	92.768	ENSSPAG00000011521	-	100	92.679	Stegastes_partitus
ENSCAFG00020012347	UPF1	100	99.464	ENSSSCG00000039301	UPF1	100	99.464	Sus_scrofa
ENSCAFG00020012347	UPF1	83	89.597	ENSTGUG00000001057	UPF1	100	95.428	Taeniopygia_guttata
ENSCAFG00020012347	UPF1	100	91.607	ENSTRUG00000005131	-	100	91.607	Takifugu_rubripes
ENSCAFG00020012347	UPF1	100	90.527	ENSTRUG00000000150	upf1	100	90.527	Takifugu_rubripes
ENSCAFG00020012347	UPF1	100	95.621	ENSTTRG00000011544	UPF1	100	95.621	Tursiops_truncatus
ENSCAFG00020012347	UPF1	100	99.911	ENSUAMG00000007093	UPF1	100	99.911	Ursus_americanus
ENSCAFG00020012347	UPF1	95	98.680	ENSUMAG00000006652	UPF1	99	100.000	Ursus_maritimus
ENSCAFG00020012347	UPF1	100	100.000	ENSVVUG00000007797	UPF1	100	100.000	Vulpes_vulpes
ENSCAFG00020012347	UPF1	100	82.467	ENSXETG00000013602	upf1	100	82.467	Xenopus_tropicalis
ENSCAFG00020012347	UPF1	92	94.859	ENSXCOG00000005764	-	100	94.859	Xiphophorus_couchianus
ENSCAFG00020012347	UPF1	97	89.751	ENSXCOG00000015275	-	96	89.658	Xiphophorus_couchianus
ENSCAFG00020012347	UPF1	100	90.000	ENSXMAG00000001703	-	100	89.911	Xiphophorus_maculatus
ENSCAFG00020012347	UPF1	100	92.061	ENSXMAG00000002540	-	100	91.971	Xiphophorus_maculatus