EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00020012906 (Gene tree)
Gene ID: 112673963
Gene Symbol: CHD6
Alias: CHD5|FLJ22369|KIAA1335|RIGB|dJ620E11.1
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Canis_lupus_dingo
Status: putative
Strand: Minus strand
Length: 135661 bases
Position: chrQKWQ01002044.1:29544736-29680396
Accession: 19057
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00020016521	ResIII	PF04851.15	1.7e-08	1	1
ENSCAFP00020016505	ResIII	PF04851.15	3.6e-08	1	1
ENSCAFP00020016501	ResIII	PF04851.15	9.1e-08	1	1
ENSCAFP00020016486	ResIII	PF04851.15	9.4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00020019134	CHD6-201	8133	-	ENSCAFP00020016486	2710 (aa)	-	-
ENSCAFT00020019172	CHD6-204	1629	-	ENSCAFP00020016521	542 (aa)	-	-
ENSCAFT00020019155	CHD6-203	2616	-	ENSCAFP00020016505	871 (aa)	-	-
ENSCAFT00020019150	CHD6-202	8016	-	ENSCAFP00020016501	2671 (aa)	-	-

Gene Model

Click here to download ENSCAFG00020012906's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00020012906's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00020012906	CHD6	95	73.988	ENSCAFG00020014565	CHD8	82	71.917
ENSCAFG00020012906	CHD6	71	41.026	ENSCAFG00020025641	SMARCA5	50	42.077
ENSCAFG00020012906	CHD6	88	40.691	ENSCAFG00020008689	CHD5	50	34.774
ENSCAFG00020012906	CHD6	95	75.145	ENSCAFG00020015856	CHD7	71	65.988
ENSCAFG00020012906	CHD6	71	40.153	ENSCAFG00020020121	CHD1L	57	41.948
ENSCAFG00020012906	CHD6	71	40.816	ENSCAFG00020001751	SMARCA1	51	41.877
ENSCAFG00020012906	CHD6	73	37.170	ENSCAFG00020026802	SMARCA2	68	32.791
ENSCAFG00020012906	CHD6	70	34.000	ENSCAFG00020004809	HELLS	74	37.851
ENSCAFG00020012906	CHD6	95	73.269	ENSCAFG00020002879	CHD9	68	64.348
ENSCAFG00020012906	CHD6	88	42.166	ENSCAFG00020007422	CHD3	50	37.200
ENSCAFG00020012906	CHD6	68	32.530	ENSCAFG00020003994	SMARCAD1	57	35.907

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00020012906	CHD6	99	97.578	ENSG00000124177	CHD6	99	99.660	Homo_sapiens
ENSCAFG00020012906	CHD6	95	84.971	ENSAPOG00000013736	chd6	67	72.267	Acanthochromis_polyacanthus
ENSCAFG00020012906	CHD6	99	98.616	ENSAMEG00000009496	CHD6	99	95.602	Ailuropoda_melanoleuca
ENSCAFG00020012906	CHD6	95	84.586	ENSATEG00000005608	chd6	67	71.037	Anabas_testudineus
ENSCAFG00020012906	CHD6	95	92.085	ENSAPLG00000015592	CHD6	99	72.714	Anas_platyrhynchos
ENSCAFG00020012906	CHD6	94	83.041	ENSACAG00000006842	CHD6	99	67.676	Anolis_carolinensis
ENSCAFG00020012906	CHD6	100	97.985	ENSANAG00000037548	CHD6	100	97.985	Aotus_nancymaae
ENSCAFG00020012906	CHD6	94	86.160	ENSAMXG00000009576	chd6	74	73.268	Astyanax_mexicanus
ENSCAFG00020012906	CHD6	99	96.194	ENSBTAG00000005733	CHD6	99	88.782	Bos_taurus
ENSCAFG00020012906	CHD6	100	97.802	ENSCJAG00000017920	CHD6	100	97.802	Callithrix_jacchus
ENSCAFG00020012906	CHD6	100	99.183	ENSCAFG00000009236	CHD6	99	99.297	Canis_familiaris
ENSCAFG00020012906	CHD6	99	96.309	ENSCHIG00000017606	CHD6	99	89.049	Capra_hircus
ENSCAFG00020012906	CHD6	84	89.614	ENSTSYG00000014635	CHD6	100	89.614	Carlito_syrichta
ENSCAFG00020012906	CHD6	99	96.886	ENSCPOG00000015641	CHD6	99	89.919	Cavia_porcellus
ENSCAFG00020012906	CHD6	100	97.985	ENSCCAG00000036828	CHD6	100	97.985	Cebus_capucinus
ENSCAFG00020012906	CHD6	100	97.985	ENSCATG00000039248	CHD6	100	97.985	Cercocebus_atys
ENSCAFG00020012906	CHD6	99	97.116	ENSCLAG00000013743	CHD6	99	89.609	Chinchilla_lanigera
ENSCAFG00020012906	CHD6	99	97.463	ENSCSAG00000013997	CHD6	99	90.812	Chlorocebus_sabaeus
ENSCAFG00020012906	CHD6	99	86.851	ENSCHOG00000012647	CHD6	94	88.918	Choloepus_hoffmanni
ENSCAFG00020012906	CHD6	95	91.892	ENSCPBG00000019382	CHD6	99	73.961	Chrysemys_picta_bellii
ENSCAFG00020012906	CHD6	100	97.985	ENSCANG00000043435	CHD6	100	97.985	Colobus_angolensis_palliatus
ENSCAFG00020012906	CHD6	99	94.694	ENSCGRG00001002694	Chd6	99	88.179	Cricetulus_griseus_chok1gshd
ENSCAFG00020012906	CHD6	100	95.604	ENSCGRG00000006749	-	100	95.604	Cricetulus_griseus_crigri
ENSCAFG00020012906	CHD6	91	88.866	ENSDARG00000017244	chd6	80	72.625	Danio_rerio
ENSCAFG00020012906	CHD6	99	96.078	ENSDNOG00000004176	CHD6	99	89.478	Dasypus_novemcinctus
ENSCAFG00020012906	CHD6	99	98.616	ENSEASG00005023433	CHD6	100	97.431	Equus_asinus_asinus
ENSCAFG00020012906	CHD6	99	98.501	ENSECAG00000011761	CHD6	99	93.279	Equus_caballus
ENSCAFG00020012906	CHD6	94	84.990	ENSELUG00000012309	chd6	92	80.605	Esox_lucius
ENSCAFG00020012906	CHD6	99	98.847	ENSFCAG00000003572	CHD6	99	94.678	Felis_catus
ENSCAFG00020012906	CHD6	95	91.506	ENSFALG00000012563	CHD6	98	71.236	Ficedula_albicollis
ENSCAFG00020012906	CHD6	99	96.540	ENSFDAG00000013791	CHD6	99	89.808	Fukomys_damarensis
ENSCAFG00020012906	CHD6	89	82.510	ENSGMOG00000011715	chd6	86	70.210	Gadus_morhua
ENSCAFG00020012906	CHD6	91	81.818	ENSGACG00000000037	chd6	92	64.201	Gasterosteus_aculeatus
ENSCAFG00020012906	CHD6	62	93.713	ENSGAGG00000007475	-	79	93.878	Gopherus_agassizii
ENSCAFG00020012906	CHD6	100	97.985	ENSGGOG00000013123	CHD6	100	97.985	Gorilla_gorilla
ENSCAFG00020012906	CHD6	95	83.815	ENSHBUG00000014701	chd6	65	73.227	Haplochromis_burtoni
ENSCAFG00020012906	CHD6	99	96.655	ENSHGLG00000004548	CHD6	99	89.738	Heterocephalus_glaber_female
ENSCAFG00020012906	CHD6	99	96.655	ENSHGLG00100006401	CHD6	99	89.738	Heterocephalus_glaber_male
ENSCAFG00020012906	CHD6	94	85.380	ENSIPUG00000003692	chd6	75	76.697	Ictalurus_punctatus
ENSCAFG00020012906	CHD6	99	97.232	ENSSTOG00000013382	CHD6	99	90.399	Ictidomys_tridecemlineatus
ENSCAFG00020012906	CHD6	95	87.066	ENSLACG00000010881	CHD6	89	74.565	Latimeria_chalumnae
ENSCAFG00020012906	CHD6	94	86.745	ENSLOCG00000007386	chd6	82	75.875	Lepisosteus_oculatus
ENSCAFG00020012906	CHD6	99	97.347	ENSLAFG00000012144	CHD6	99	90.660	Loxodonta_africana
ENSCAFG00020012906	CHD6	100	97.985	ENSMFAG00000032830	CHD6	100	97.985	Macaca_fascicularis
ENSCAFG00020012906	CHD6	100	97.985	ENSMMUG00000020458	CHD6	100	97.985	Macaca_mulatta
ENSCAFG00020012906	CHD6	100	97.985	ENSMNEG00000040847	CHD6	100	97.985	Macaca_nemestrina
ENSCAFG00020012906	CHD6	100	97.985	ENSMLEG00000031965	CHD6	100	97.985	Mandrillus_leucophaeus
ENSCAFG00020012906	CHD6	95	84.200	ENSMAMG00000013111	chd6	65	73.576	Mastacembelus_armatus
ENSCAFG00020012906	CHD6	95	91.522	ENSMGAG00000001121	CHD6	100	71.877	Meleagris_gallopavo
ENSCAFG00020012906	CHD6	100	97.436	ENSMICG00000016641	CHD6	100	97.436	Microcebus_murinus
ENSCAFG00020012906	CHD6	99	95.271	ENSMOCG00000014004	-	97	94.665	Microtus_ochrogaster
ENSCAFG00020012906	CHD6	95	94.402	ENSMODG00000000720	-	99	80.885	Monodelphis_domestica
ENSCAFG00020012906	CHD6	99	93.426	MGP_CAROLIEiJ_G0024604	Chd6	99	94.293	Mus_caroli
ENSCAFG00020012906	CHD6	99	93.426	ENSMUSG00000057133	Chd6	99	94.208	Mus_musculus
ENSCAFG00020012906	CHD6	99	94.002	MGP_PahariEiJ_G0026048	Chd6	99	94.634	Mus_pahari
ENSCAFG00020012906	CHD6	99	93.541	MGP_SPRETEiJ_G0025526	Chd6	99	94.293	Mus_spretus
ENSCAFG00020012906	CHD6	99	98.731	ENSMPUG00000017695	CHD6	99	94.434	Mustela_putorius_furo
ENSCAFG00020012906	CHD6	99	97.693	ENSMLUG00000016247	CHD6	99	91.657	Myotis_lucifugus
ENSCAFG00020012906	CHD6	94	84.078	ENSNBRG00000013839	chd6	79	74.339	Neolamprologus_brichardi
ENSCAFG00020012906	CHD6	99	95.271	ENSNLEG00000006496	CHD6	99	90.620	Nomascus_leucogenys
ENSCAFG00020012906	CHD6	99	91.696	ENSOPRG00000013376	-	99	86.484	Ochotona_princeps
ENSCAFG00020012906	CHD6	95	84.008	ENSONIG00000000393	chd6	85	74.617	Oreochromis_niloticus
ENSCAFG00020012906	CHD6	95	92.085	ENSOANG00000014347	CHD6	99	70.599	Ornithorhynchus_anatinus
ENSCAFG00020012906	CHD6	99	97.116	ENSOCUG00000012394	CHD6	99	88.737	Oryctolagus_cuniculus
ENSCAFG00020012906	CHD6	96	83.748	ENSORLG00020021891	chd6	99	83.748	Oryzias_latipes_hni
ENSCAFG00020012906	CHD6	99	96.309	ENSOGAG00000002427	CHD6	99	89.402	Otolemur_garnettii
ENSCAFG00020012906	CHD6	99	94.810	ENSOARG00000002597	CHD6	99	87.172	Ovis_aries
ENSCAFG00020012906	CHD6	99	98.847	ENSPPRG00000014756	CHD6	99	94.826	Panthera_pardus
ENSCAFG00020012906	CHD6	99	98.847	ENSPTIG00000011094	CHD6	99	94.715	Panthera_tigris_altaica
ENSCAFG00020012906	CHD6	100	97.985	ENSPTRG00000013504	CHD6	99	97.985	Pan_troglodytes
ENSCAFG00020012906	CHD6	100	97.802	ENSPANG00000025554	CHD6	100	97.802	Papio_anubis
ENSCAFG00020012906	CHD6	94	86.745	ENSPKIG00000005578	chd6	79	72.848	Paramormyrops_kingsleyae
ENSCAFG00020012906	CHD6	95	84.749	ENSPMGG00000014877	chd6	88	75.622	Periophthalmus_magnuspinnatus
ENSCAFG00020012906	CHD6	100	95.604	ENSPEMG00000014672	-	100	95.604	Peromyscus_maniculatus_bairdii
ENSCAFG00020012906	CHD6	95	94.402	ENSPCIG00000028037	CHD6	99	80.472	Phascolarctos_cinereus
ENSCAFG00020012906	CHD6	95	83.815	ENSPLAG00000003128	chd6	65	71.875	Poecilia_latipinna
ENSCAFG00020012906	CHD6	96	83.333	ENSPREG00000022653	chd6	99	86.630	Poecilia_reticulata
ENSCAFG00020012906	CHD6	99	97.463	ENSPPYG00000011016	CHD6	99	91.221	Pongo_abelii
ENSCAFG00020012906	CHD6	100	97.985	ENSPCOG00000001089	CHD6	100	97.985	Propithecus_coquereli
ENSCAFG00020012906	CHD6	95	83.815	ENSPNYG00000022516	chd6	78	75.033	Pundamilia_nyererei
ENSCAFG00020012906	CHD6	94	86.745	ENSPNAG00000012825	chd6	79	71.308	Pygocentrus_nattereri
ENSCAFG00020012906	CHD6	99	93.195	ENSRNOG00000016744	Chd6	99	86.499	Rattus_norvegicus
ENSCAFG00020012906	CHD6	100	97.985	ENSSBOG00000022089	CHD6	99	97.985	Saimiri_boliviensis_boliviensis
ENSCAFG00020012906	CHD6	95	94.208	ENSSHAG00000017072	CHD6	99	80.221	Sarcophilus_harrisii
ENSCAFG00020012906	CHD6	94	86.550	ENSSFOG00015012920	chd6	81	73.309	Scleropages_formosus
ENSCAFG00020012906	CHD6	85	99.563	ENSSARG00000002615	-	60	100.000	Sorex_araneus
ENSCAFG00020012906	CHD6	99	97.001	ENSSSCG00000007360	CHD6	99	91.931	Sus_scrofa
ENSCAFG00020012906	CHD6	95	91.892	ENSTGUG00000003179	CHD6	99	73.754	Taeniopygia_guttata
ENSCAFG00020012906	CHD6	95	82.852	ENSTNIG00000017487	chd6	64	69.894	Tetraodon_nigroviridis
ENSCAFG00020012906	CHD6	99	95.963	ENSTTRG00000013438	CHD6	99	88.483	Tursiops_truncatus
ENSCAFG00020012906	CHD6	100	100.000	ENSUAMG00000024036	CHD6	100	100.000	Ursus_americanus
ENSCAFG00020012906	CHD6	100	100.000	ENSUMAG00000002017	CHD6	100	100.000	Ursus_maritimus
ENSCAFG00020012906	CHD6	99	91.264	ENSVPAG00000007941	CHD6	93	92.417	Vicugna_pacos
ENSCAFG00020012906	CHD6	100	98.701	ENSVVUG00000029164	CHD6	99	98.817	Vulpes_vulpes
ENSCAFG00020012906	CHD6	99	66.514	ENSXETG00000021445	chd6	91	68.788	Xenopus_tropicalis