EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCAFG00020014462 (Gene tree)
Gene ID: 112646283
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Canis_lupus_dingo
Status: putative
Strand: Minus strand
Length: 13312 bases
Position: chrQKWQ01002087.1:10191255-10204566
Accession: 2327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00020018090	zf-CCCH	PF00642.24	6e-18	1	2
ENSCAFP00020018090	zf-CCCH	PF00642.24	6e-18	2	2
ENSCAFP00020018092	zf-CCCH	PF00642.24	3.1e-13	1	2
ENSCAFP00020018092	zf-CCCH	PF00642.24	3.1e-13	2	2
ENSCAFP00020018092	zf-CCHC	PF00098.23	3.5e-06	1	1
ENSCAFP00020018090	zf-CCHC	PF00098.23	4.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00020020981	CPSF4-202	615	-	ENSCAFP00020018092	204 (aa)	-	-
ENSCAFT00020020979	CPSF4-201	789	-	ENSCAFP00020018090	262 (aa)	-	-

Gene Model

Click here to download ENSCAFG00020014462's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00020014462's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00020014462	CPSF4	100	92.565	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSCAFG00020014462	CPSF4	69	74.725	ENSAPOG00000004921	cpsf4	100	74.725	Acanthochromis_polyacanthus
ENSCAFG00020014462	CPSF4	100	93.309	ENSAMEG00000006252	CPSF4	100	93.309	Ailuropoda_melanoleuca
ENSCAFG00020014462	CPSF4	100	74.721	ENSACIG00000009248	cpsf4	100	72.862	Amphilophus_citrinellus
ENSCAFG00020014462	CPSF4	100	80.741	ENSAOCG00000019616	cpsf4	100	80.741	Amphiprion_ocellaris
ENSCAFG00020014462	CPSF4	100	80.741	ENSAPEG00000011679	cpsf4	100	80.741	Amphiprion_percula
ENSCAFG00020014462	CPSF4	100	79.779	ENSATEG00000007010	cpsf4	100	79.779	Anabas_testudineus
ENSCAFG00020014462	CPSF4	100	87.361	ENSACAG00000012941	CPSF4	89	87.361	Anolis_carolinensis
ENSCAFG00020014462	CPSF4	100	92.565	ENSANAG00000021360	CPSF4	100	92.565	Aotus_nancymaae
ENSCAFG00020014462	CPSF4	100	78.889	ENSACLG00000010374	cpsf4	100	78.889	Astatotilapia_calliptera
ENSCAFG00020014462	CPSF4	100	80.074	ENSAMXG00000031647	cpsf4	100	80.812	Astyanax_mexicanus
ENSCAFG00020014462	CPSF4	100	82.900	ENSBTAG00000002090	CPSF4	100	80.297	Bos_taurus
ENSCAFG00020014462	CPSF4	100	92.565	ENSCJAG00000015826	CPSF4	100	92.565	Callithrix_jacchus
ENSCAFG00020014462	CPSF4	100	93.680	ENSCAFG00000015036	CPSF4	100	93.680	Canis_familiaris
ENSCAFG00020014462	CPSF4	100	92.565	ENSCHIG00000014313	CPSF4	100	92.565	Capra_hircus
ENSCAFG00020014462	CPSF4	100	80.751	ENSTSYG00000014604	-	100	80.751	Carlito_syrichta
ENSCAFG00020014462	CPSF4	78	88.889	ENSTSYG00000008195	-	89	88.889	Carlito_syrichta
ENSCAFG00020014462	CPSF4	100	90.521	ENSTSYG00000005712	-	100	90.521	Carlito_syrichta
ENSCAFG00020014462	CPSF4	87	98.246	ENSCAPG00000013881	CPSF4	96	95.021	Cavia_aperea
ENSCAFG00020014462	CPSF4	100	91.469	ENSCPOG00000001783	CPSF4	100	91.469	Cavia_porcellus
ENSCAFG00020014462	CPSF4	100	92.565	ENSCCAG00000028291	CPSF4	100	92.565	Cebus_capucinus
ENSCAFG00020014462	CPSF4	100	92.565	ENSCATG00000038440	CPSF4	100	92.565	Cercocebus_atys
ENSCAFG00020014462	CPSF4	100	92.937	ENSCLAG00000007050	CPSF4	100	92.937	Chinchilla_lanigera
ENSCAFG00020014462	CPSF4	100	92.565	ENSCSAG00000017795	CPSF4	100	92.565	Chlorocebus_sabaeus
ENSCAFG00020014462	CPSF4	60	73.939	ENSCPBG00000010269	-	99	73.939	Chrysemys_picta_bellii
ENSCAFG00020014462	CPSF4	82	95.370	ENSCPBG00000020869	CPSF4	100	95.370	Chrysemys_picta_bellii
ENSCAFG00020014462	CPSF4	97	52.874	ENSCING00000021080	-	97	52.874	Ciona_intestinalis
ENSCAFG00020014462	CPSF4	96	50.530	ENSCSAVG00000011469	-	97	50.178	Ciona_savignyi
ENSCAFG00020014462	CPSF4	100	92.565	ENSCANG00000019384	CPSF4	100	92.565	Colobus_angolensis_palliatus
ENSCAFG00020014462	CPSF4	100	91.469	ENSCGRG00001024184	Cpsf4	100	91.469	Cricetulus_griseus_chok1gshd
ENSCAFG00020014462	CPSF4	100	93.309	ENSCGRG00000013892	Cpsf4	100	93.309	Cricetulus_griseus_crigri
ENSCAFG00020014462	CPSF4	100	79.259	ENSCSEG00000019055	cpsf4	100	79.259	Cynoglossus_semilaevis
ENSCAFG00020014462	CPSF4	100	78.889	ENSCVAG00000016528	cpsf4	100	78.889	Cyprinodon_variegatus
ENSCAFG00020014462	CPSF4	100	80.443	ENSDARG00000020217	cpsf4	100	80.443	Danio_rerio
ENSCAFG00020014462	CPSF4	100	92.937	ENSDNOG00000006344	CPSF4	100	92.937	Dasypus_novemcinctus
ENSCAFG00020014462	CPSF4	83	99.078	ENSDORG00000000742	Cpsf4	100	99.078	Dipodomys_ordii
ENSCAFG00020014462	CPSF4	100	51.712	FBgn0015621	Clp	99	51.027	Drosophila_melanogaster
ENSCAFG00020014462	CPSF4	73	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSCAFG00020014462	CPSF4	99	61.049	ENSEBUG00000012552	cpsf4	98	61.049	Eptatretus_burgeri
ENSCAFG00020014462	CPSF4	100	84.015	ENSEASG00005002487	CPSF4	100	84.015	Equus_asinus_asinus
ENSCAFG00020014462	CPSF4	100	93.309	ENSECAG00000007525	CPSF4	100	93.309	Equus_caballus
ENSCAFG00020014462	CPSF4	63	100.000	ENSEEUG00000002158	CPSF4	66	100.000	Erinaceus_europaeus
ENSCAFG00020014462	CPSF4	100	77.737	ENSELUG00000011481	cpsf4	100	77.737	Esox_lucius
ENSCAFG00020014462	CPSF4	100	93.309	ENSFCAG00000015070	CPSF4	100	93.309	Felis_catus
ENSCAFG00020014462	CPSF4	100	79.554	ENSFALG00000013799	CPSF4	100	78.067	Ficedula_albicollis
ENSCAFG00020014462	CPSF4	60	60.606	ENSFALG00000012906	-	100	60.606	Ficedula_albicollis
ENSCAFG00020014462	CPSF4	90	91.770	ENSFDAG00000014092	CPSF4	100	91.770	Fukomys_damarensis
ENSCAFG00020014462	CPSF4	100	78.889	ENSFHEG00000010880	cpsf4	100	78.889	Fundulus_heteroclitus
ENSCAFG00020014462	CPSF4	100	72.694	ENSGMOG00000002330	cpsf4	100	71.587	Gadus_morhua
ENSCAFG00020014462	CPSF4	99	32.735	ENSGALG00000004441	-	98	32.735	Gallus_gallus
ENSCAFG00020014462	CPSF4	100	80.297	ENSGALG00000004714	CPSF4	100	78.439	Gallus_gallus
ENSCAFG00020014462	CPSF4	100	78.519	ENSGAFG00000010580	cpsf4	100	78.519	Gambusia_affinis
ENSCAFG00020014462	CPSF4	100	72.694	ENSGACG00000007792	cpsf4	100	71.587	Gasterosteus_aculeatus
ENSCAFG00020014462	CPSF4	100	89.591	ENSGAGG00000021835	CPSF4	100	89.591	Gopherus_agassizii
ENSCAFG00020014462	CPSF4	67	70.330	ENSGAGG00000020579	-	92	73.939	Gopherus_agassizii
ENSCAFG00020014462	CPSF4	100	92.565	ENSGGOG00000015131	CPSF4	100	92.565	Gorilla_gorilla
ENSCAFG00020014462	CPSF4	100	78.889	ENSHBUG00000013699	cpsf4	100	78.889	Haplochromis_burtoni
ENSCAFG00020014462	CPSF4	100	91.513	ENSHGLG00000017150	CPSF4	100	91.513	Heterocephalus_glaber_female
ENSCAFG00020014462	CPSF4	84	95.928	ENSHGLG00100009215	-	95	95.928	Heterocephalus_glaber_male
ENSCAFG00020014462	CPSF4	100	63.033	ENSHGLG00100017302	-	100	60.664	Heterocephalus_glaber_male
ENSCAFG00020014462	CPSF4	100	76.667	ENSHCOG00000004397	cpsf4	100	76.667	Hippocampus_comes
ENSCAFG00020014462	CPSF4	100	79.705	ENSIPUG00000017147	cpsf4	100	80.882	Ictalurus_punctatus
ENSCAFG00020014462	CPSF4	100	93.309	ENSSTOG00000001688	CPSF4	100	93.309	Ictidomys_tridecemlineatus
ENSCAFG00020014462	CPSF4	100	92.937	ENSJJAG00000019426	Cpsf4	100	92.937	Jaculus_jaculus
ENSCAFG00020014462	CPSF4	100	78.148	ENSKMAG00000015642	cpsf4	100	78.148	Kryptolebias_marmoratus
ENSCAFG00020014462	CPSF4	100	57.037	ENSLACG00000018470	-	100	57.037	Latimeria_chalumnae
ENSCAFG00020014462	CPSF4	100	82.963	ENSLACG00000010938	CPSF4	100	82.963	Latimeria_chalumnae
ENSCAFG00020014462	CPSF4	100	84.015	ENSLOCG00000004814	cpsf4	100	84.015	Lepisosteus_oculatus
ENSCAFG00020014462	CPSF4	100	92.937	ENSLAFG00000000159	CPSF4	100	98.137	Loxodonta_africana
ENSCAFG00020014462	CPSF4	100	92.565	ENSMFAG00000001462	CPSF4	100	92.565	Macaca_fascicularis
ENSCAFG00020014462	CPSF4	100	92.565	ENSMMUG00000019191	CPSF4	100	92.565	Macaca_mulatta
ENSCAFG00020014462	CPSF4	100	92.565	ENSMNEG00000032306	CPSF4	100	92.565	Macaca_nemestrina
ENSCAFG00020014462	CPSF4	100	92.565	ENSMLEG00000034721	CPSF4	100	92.565	Mandrillus_leucophaeus
ENSCAFG00020014462	CPSF4	100	79.630	ENSMAMG00000006244	cpsf4	100	79.630	Mastacembelus_armatus
ENSCAFG00020014462	CPSF4	100	78.889	ENSMZEG00005007515	cpsf4	100	78.889	Maylandia_zebra
ENSCAFG00020014462	CPSF4	83	84.404	ENSMGAG00000004235	CPSF4	92	82.110	Meleagris_gallopavo
ENSCAFG00020014462	CPSF4	100	93.309	ENSMAUG00000021253	Cpsf4	100	93.309	Mesocricetus_auratus
ENSCAFG00020014462	CPSF4	100	92.565	ENSMICG00000017429	CPSF4	100	92.565	Microcebus_murinus
ENSCAFG00020014462	CPSF4	100	93.309	ENSMOCG00000014901	Cpsf4	100	93.309	Microtus_ochrogaster
ENSCAFG00020014462	CPSF4	100	79.259	ENSMMOG00000001813	cpsf4	95	89.308	Mola_mola
ENSCAFG00020014462	CPSF4	100	90.706	ENSMODG00000001367	CPSF4	100	90.706	Monodelphis_domestica
ENSCAFG00020014462	CPSF4	100	80.228	ENSMALG00000012611	cpsf4	100	80.228	Monopterus_albus
ENSCAFG00020014462	CPSF4	100	93.309	MGP_CAROLIEiJ_G0028012	Cpsf4	100	93.309	Mus_caroli
ENSCAFG00020014462	CPSF4	100	93.309	ENSMUSG00000029625	Cpsf4	100	93.309	Mus_musculus
ENSCAFG00020014462	CPSF4	100	93.309	MGP_PahariEiJ_G0024581	Cpsf4	100	93.309	Mus_pahari
ENSCAFG00020014462	CPSF4	100	92.937	MGP_SPRETEiJ_G0029013	Cpsf4	100	92.937	Mus_spretus
ENSCAFG00020014462	CPSF4	100	93.309	ENSMPUG00000016508	CPSF4	100	93.309	Mustela_putorius_furo
ENSCAFG00020014462	CPSF4	83	87.156	ENSMLUG00000010980	CPSF4	92	87.156	Myotis_lucifugus
ENSCAFG00020014462	CPSF4	100	92.937	ENSNGAG00000001567	Cpsf4	100	92.937	Nannospalax_galili
ENSCAFG00020014462	CPSF4	91	78.049	ENSNBRG00000003943	cpsf4	98	78.049	Neolamprologus_brichardi
ENSCAFG00020014462	CPSF4	100	90.521	ENSNLEG00000011074	CPSF4	100	90.521	Nomascus_leucogenys
ENSCAFG00020014462	CPSF4	100	90.706	ENSMEUG00000006955	CPSF4	100	90.706	Notamacropus_eugenii
ENSCAFG00020014462	CPSF4	100	92.565	ENSOPRG00000013663	CPSF4	100	92.565	Ochotona_princeps
ENSCAFG00020014462	CPSF4	100	69.597	ENSODEG00000009779	-	100	69.597	Octodon_degus
ENSCAFG00020014462	CPSF4	100	93.309	ENSODEG00000011181	-	100	93.309	Octodon_degus
ENSCAFG00020014462	CPSF4	98	76.744	ENSODEG00000018283	-	91	74.806	Octodon_degus
ENSCAFG00020014462	CPSF4	100	78.889	ENSONIG00000008495	cpsf4	100	78.889	Oreochromis_niloticus
ENSCAFG00020014462	CPSF4	83	95.413	ENSOANG00000007729	CPSF4	93	95.413	Ornithorhynchus_anatinus
ENSCAFG00020014462	CPSF4	100	55.147	ENSOANG00000009568	-	100	54.779	Ornithorhynchus_anatinus
ENSCAFG00020014462	CPSF4	100	92.565	ENSOCUG00000002437	CPSF4	70	92.565	Oryctolagus_cuniculus
ENSCAFG00020014462	CPSF4	100	78.810	ENSORLG00000022798	cpsf4	100	78.810	Oryzias_latipes
ENSCAFG00020014462	CPSF4	100	78.810	ENSORLG00020008548	cpsf4	100	78.810	Oryzias_latipes_hni
ENSCAFG00020014462	CPSF4	100	78.439	ENSORLG00015019575	cpsf4	100	78.439	Oryzias_latipes_hsok
ENSCAFG00020014462	CPSF4	100	78.199	ENSOMEG00000005176	cpsf4	100	78.199	Oryzias_melastigma
ENSCAFG00020014462	CPSF4	100	92.937	ENSOGAG00000010884	CPSF4	100	92.937	Otolemur_garnettii
ENSCAFG00020014462	CPSF4	100	80.357	ENSOARG00000018668	CPSF4	100	79.643	Ovis_aries
ENSCAFG00020014462	CPSF4	100	92.193	ENSPPAG00000043355	CPSF4	100	92.193	Pan_paniscus
ENSCAFG00020014462	CPSF4	100	93.309	ENSPPRG00000003134	CPSF4	100	93.309	Panthera_pardus
ENSCAFG00020014462	CPSF4	90	92.149	ENSPTIG00000005604	CPSF4	90	92.149	Panthera_tigris_altaica
ENSCAFG00020014462	CPSF4	100	92.193	ENSPTRG00000019453	CPSF4	100	92.193	Pan_troglodytes
ENSCAFG00020014462	CPSF4	100	92.565	ENSPANG00000023123	CPSF4	100	92.565	Papio_anubis
ENSCAFG00020014462	CPSF4	100	78.832	ENSPKIG00000014278	cpsf4	100	78.832	Paramormyrops_kingsleyae
ENSCAFG00020014462	CPSF4	83	58.904	ENSPSIG00000018198	-	100	58.257	Pelodiscus_sinensis
ENSCAFG00020014462	CPSF4	82	94.907	ENSPSIG00000011229	CPSF4	100	94.907	Pelodiscus_sinensis
ENSCAFG00020014462	CPSF4	100	75.954	ENSPMGG00000017735	cpsf4	100	74.427	Periophthalmus_magnuspinnatus
ENSCAFG00020014462	CPSF4	100	93.309	ENSPEMG00000004508	Cpsf4	100	93.309	Peromyscus_maniculatus_bairdii
ENSCAFG00020014462	CPSF4	100	90.706	ENSPCIG00000024776	CPSF4	100	90.706	Phascolarctos_cinereus
ENSCAFG00020014462	CPSF4	100	78.519	ENSPFOG00000014912	cpsf4	100	78.519	Poecilia_formosa
ENSCAFG00020014462	CPSF4	100	71.004	ENSPLAG00000009599	cpsf4	100	71.004	Poecilia_latipinna
ENSCAFG00020014462	CPSF4	100	78.519	ENSPMEG00000009790	cpsf4	100	78.519	Poecilia_mexicana
ENSCAFG00020014462	CPSF4	100	77.778	ENSPREG00000018166	cpsf4	100	75.185	Poecilia_reticulata
ENSCAFG00020014462	CPSF4	83	97.706	ENSPPYG00000017378	CPSF4	93	97.706	Pongo_abelii
ENSCAFG00020014462	CPSF4	100	92.193	ENSPCAG00000001892	CPSF4	100	92.193	Procavia_capensis
ENSCAFG00020014462	CPSF4	100	96.183	ENSPCOG00000012771	CPSF4	100	96.183	Propithecus_coquereli
ENSCAFG00020014462	CPSF4	100	92.937	ENSPVAG00000007531	CPSF4	100	92.937	Pteropus_vampyrus
ENSCAFG00020014462	CPSF4	100	78.889	ENSPNYG00000018559	cpsf4	100	78.889	Pundamilia_nyererei
ENSCAFG00020014462	CPSF4	100	81.181	ENSPNAG00000003736	cpsf4	100	81.919	Pygocentrus_nattereri
ENSCAFG00020014462	CPSF4	100	91.469	ENSRNOG00000000985	Cpsf4	100	91.469	Rattus_norvegicus
ENSCAFG00020014462	CPSF4	83	98.624	ENSRBIG00000033886	CPSF4	93	98.624	Rhinopithecus_bieti
ENSCAFG00020014462	CPSF4	100	90.521	ENSRROG00000040431	CPSF4	100	90.521	Rhinopithecus_roxellana
ENSCAFG00020014462	CPSF4	100	92.565	ENSSBOG00000020493	CPSF4	100	92.565	Saimiri_boliviensis_boliviensis
ENSCAFG00020014462	CPSF4	100	90.706	ENSSHAG00000011533	CPSF4	100	90.706	Sarcophilus_harrisii
ENSCAFG00020014462	CPSF4	100	79.710	ENSSFOG00015007883	cpsf4	100	80.435	Scleropages_formosus
ENSCAFG00020014462	CPSF4	100	74.349	ENSSMAG00000006374	cpsf4	100	72.862	Scophthalmus_maximus
ENSCAFG00020014462	CPSF4	100	79.259	ENSSDUG00000018887	cpsf4	100	79.259	Seriola_dumerili
ENSCAFG00020014462	CPSF4	100	79.259	ENSSLDG00000019078	cpsf4	100	79.259	Seriola_lalandi_dorsalis
ENSCAFG00020014462	CPSF4	83	99.083	ENSSARG00000012416	CPSF4	93	99.083	Sorex_araneus
ENSCAFG00020014462	CPSF4	100	87.732	ENSSPUG00000003549	CPSF4	100	87.732	Sphenodon_punctatus
ENSCAFG00020014462	CPSF4	96	54.615	ENSSPUG00000014803	-	97	54.264	Sphenodon_punctatus
ENSCAFG00020014462	CPSF4	100	75.465	ENSSPAG00000006174	cpsf4	100	72.491	Stegastes_partitus
ENSCAFG00020014462	CPSF4	100	83.643	ENSSSCG00000026896	CPSF4	100	81.413	Sus_scrofa
ENSCAFG00020014462	CPSF4	100	78.967	ENSTGUG00000007552	CPSF4	100	77.491	Taeniopygia_guttata
ENSCAFG00020014462	CPSF4	100	76.190	ENSTRUG00000024220	cpsf4	100	76.190	Takifugu_rubripes
ENSCAFG00020014462	CPSF4	100	75.185	ENSTNIG00000006265	cpsf4	100	76.667	Tetraodon_nigroviridis
ENSCAFG00020014462	CPSF4	83	88.532	ENSTBEG00000011406	CPSF4	93	88.532	Tupaia_belangeri
ENSCAFG00020014462	CPSF4	100	71.747	ENSTTRG00000003007	CPSF4	74	100.000	Tursiops_truncatus
ENSCAFG00020014462	CPSF4	92	82.186	ENSUAMG00000008051	CPSF4	85	79.352	Ursus_americanus
ENSCAFG00020014462	CPSF4	100	83.643	ENSUMAG00000009474	CPSF4	100	81.041	Ursus_maritimus
ENSCAFG00020014462	CPSF4	100	84.387	ENSVVUG00000008824	CPSF4	100	84.387	Vulpes_vulpes
ENSCAFG00020014462	CPSF4	100	82.437	ENSXETG00000009892	cpsf4	100	82.437	Xenopus_tropicalis
ENSCAFG00020014462	CPSF4	99	57.407	ENSXETG00000004641	cpsf4l	99	56.716	Xenopus_tropicalis
ENSCAFG00020014462	CPSF4	100	79.147	ENSXCOG00000016040	cpsf4	100	79.147	Xiphophorus_couchianus
ENSCAFG00020014462	CPSF4	100	78.519	ENSXMAG00000024670	cpsf4	100	78.519	Xiphophorus_maculatus