EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCAFG00020014480 (Gene tree)
Gene ID: 112646277
Gene Symbol: -
Alias: -
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Canis_lupus_dingo
Status: putative
Strand: Plus strand
Length: 17713 bases
Position: chrQKWQ01002087.1:10204422-10222134
Accession: 112646277
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00020018095	PPR	PF01535.20	2e-14	1	1
ENSCAFP00020018098	PPR	PF01535.20	2.1e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00020020984	-	2720	-	ENSCAFP00020018095	754 (aa)	XP_025281917	UPI000DC675BC
ENSCAFT00020020987	-	2798	-	ENSCAFP00020018098	780 (aa)	-	-

Gene Model

Click here to download ENSCAFG00020014480's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00020014480's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00020014480	-	94	76.479	ENSG00000248919	ATP5MF-PTCD1	94	76.620	Homo_sapiens
ENSCAFG00020014480	-	93	76.379	ENSG00000106246	PTCD1	100	76.521	Homo_sapiens
ENSCAFG00020014480	-	78	46.823	ENSAPOG00000010679	ptcd1	89	46.912	Acanthochromis_polyacanthus
ENSCAFG00020014480	-	94	88.826	ENSAMEG00000006224	-	94	88.826	Ailuropoda_melanoleuca
ENSCAFG00020014480	-	85	47.846	ENSACIG00000017861	ptcd1	92	47.846	Amphilophus_citrinellus
ENSCAFG00020014480	-	83	48.336	ENSAOCG00000020741	-	86	48.336	Amphiprion_ocellaris
ENSCAFG00020014480	-	79	47.595	ENSAOCG00000022617	ptcd1	88	47.682	Amphiprion_ocellaris
ENSCAFG00020014480	-	83	48.025	ENSAPEG00000022632	ptcd1	87	48.025	Amphiprion_percula
ENSCAFG00020014480	-	78	50.833	ENSATEG00000007016	ptcd1	81	51.269	Anabas_testudineus
ENSCAFG00020014480	-	81	59.543	ENSAPLG00000006862	-	96	59.194	Anas_platyrhynchos
ENSCAFG00020014480	-	90	56.897	ENSACAG00000012871	-	91	56.897	Anolis_carolinensis
ENSCAFG00020014480	-	91	76.547	ENSANAG00000035790	-	100	76.691	Aotus_nancymaae
ENSCAFG00020014480	-	80	49.591	ENSACLG00000002824	ptcd1	83	49.591	Astatotilapia_calliptera
ENSCAFG00020014480	-	80	49.209	ENSAMXG00000037292	ptcd1	88	49.449	Astyanax_mexicanus
ENSCAFG00020014480	-	95	80.498	ENSBTAG00000020440	-	89	80.498	Bos_taurus
ENSCAFG00020014480	-	93	76.130	ENSCJAG00000015815	-	100	76.271	Callithrix_jacchus
ENSCAFG00020014480	-	99	99.867	ENSCAFG00000015055	-	99	99.867	Canis_familiaris
ENSCAFG00020014480	-	93	81.020	ENSCHIG00000027000	-	99	81.020	Capra_hircus
ENSCAFG00020014480	-	93	80.170	ENSTSYG00000029495	-	100	80.170	Carlito_syrichta
ENSCAFG00020014480	-	87	77.660	ENSCAPG00000014660	-	100	77.660	Cavia_aperea
ENSCAFG00020014480	-	93	76.977	ENSCPOG00000001780	-	100	76.977	Cavia_porcellus
ENSCAFG00020014480	-	93	75.035	ENSCCAG00000034025	-	100	76.164	Cebus_capucinus
ENSCAFG00020014480	-	93	75.282	ENSCATG00000040859	-	100	75.565	Cercocebus_atys
ENSCAFG00020014480	-	92	78.098	ENSCLAG00000006354	-	100	77.935	Chinchilla_lanigera
ENSCAFG00020014480	-	85	75.772	ENSCSAG00000017794	-	98	74.925	Chlorocebus_sabaeus
ENSCAFG00020014480	-	90	57.260	ENSCPBG00000020866	-	97	57.397	Chrysemys_picta_bellii
ENSCAFG00020014480	-	93	75.212	ENSCANG00000023441	-	100	75.496	Colobus_angolensis_palliatus
ENSCAFG00020014480	-	92	75.466	ENSCGRG00001023686	Ptcd1	99	75.466	Cricetulus_griseus_chok1gshd
ENSCAFG00020014480	-	92	75.143	ENSCGRG00000015031	Ptcd1	99	75.143	Cricetulus_griseus_crigri
ENSCAFG00020014480	-	80	47.068	ENSCSEG00000002378	ptcd1	83	47.394	Cynoglossus_semilaevis
ENSCAFG00020014480	-	78	48.658	ENSCVAG00000015826	ptcd1	81	48.658	Cyprinodon_variegatus
ENSCAFG00020014480	-	79	48.344	ENSCVAG00000003621	ptcd1	88	47.761	Cyprinodon_variegatus
ENSCAFG00020014480	-	83	49.686	ENSDARG00000076176	ptcd1	90	49.686	Danio_rerio
ENSCAFG00020014480	-	93	77.574	ENSDNOG00000009957	-	100	78.732	Dasypus_novemcinctus
ENSCAFG00020014480	-	91	75.000	ENSDORG00000000740	Ptcd1	99	75.434	Dipodomys_ordii
ENSCAFG00020014480	-	78	42.006	ENSEBUG00000014515	ptcd1	96	42.632	Eptatretus_burgeri
ENSCAFG00020014480	-	93	83.803	ENSEASG00005002480	-	100	84.789	Equus_asinus_asinus
ENSCAFG00020014480	-	93	84.085	ENSECAG00000016617	-	100	85.070	Equus_caballus
ENSCAFG00020014480	-	78	48.553	ENSELUG00000016517	ptcd1	82	48.553	Esox_lucius
ENSCAFG00020014480	-	93	88.652	ENSFCAG00000015069	-	100	88.652	Felis_catus
ENSCAFG00020014480	-	87	56.642	ENSFALG00000013803	-	93	56.871	Ficedula_albicollis
ENSCAFG00020014480	-	93	76.912	ENSFDAG00000006393	-	100	76.912	Fukomys_damarensis
ENSCAFG00020014480	-	69	49.333	ENSFHEG00000012491	ptcd1	87	49.333	Fundulus_heteroclitus
ENSCAFG00020014480	-	77	48.877	ENSGMOG00000007639	ptcd1	91	48.877	Gadus_morhua
ENSCAFG00020014480	-	80	57.771	ENSGALG00000004711	-	88	57.609	Gallus_gallus
ENSCAFG00020014480	-	78	49.832	ENSGAFG00000013175	ptcd1	82	49.832	Gambusia_affinis
ENSCAFG00020014480	-	79	49.251	ENSGACG00000016607	ptcd1	90	49.833	Gasterosteus_aculeatus
ENSCAFG00020014480	-	86	56.380	ENSGAGG00000021832	-	100	56.380	Gopherus_agassizii
ENSCAFG00020014480	-	93	75.779	ENSGGOG00000015123	-	99	75.921	Gorilla_gorilla
ENSCAFG00020014480	-	80	49.427	ENSHBUG00000018275	ptcd1	83	49.427	Haplochromis_burtoni
ENSCAFG00020014480	-	93	76.695	ENSHGLG00000017621	-	100	76.695	Heterocephalus_glaber_female
ENSCAFG00020014480	-	93	76.695	ENSHGLG00100007218	-	100	76.695	Heterocephalus_glaber_male
ENSCAFG00020014480	-	82	46.840	ENSHCOG00000010784	ptcd1	87	47.097	Hippocampus_comes
ENSCAFG00020014480	-	93	79.126	ENSSTOG00000001682	-	100	79.126	Ictidomys_tridecemlineatus
ENSCAFG00020014480	-	93	75.603	ENSJJAG00000000319	Ptcd1	100	75.603	Jaculus_jaculus
ENSCAFG00020014480	-	82	47.267	ENSKMAG00000008708	ptcd1	85	47.428	Kryptolebias_marmoratus
ENSCAFG00020014480	-	89	45.015	ENSLBEG00000008061	ptcd1	92	45.109	Labrus_bergylta
ENSCAFG00020014480	-	85	55.963	ENSLACG00000011172	ptcd1	90	55.963	Latimeria_chalumnae
ENSCAFG00020014480	-	85	53.195	ENSLOCG00000004833	ptcd1	97	53.674	Lepisosteus_oculatus
ENSCAFG00020014480	-	93	75.493	ENSLAFG00000002588	-	100	75.634	Loxodonta_africana
ENSCAFG00020014480	-	93	75.000	ENSMFAG00000041324	-	100	75.282	Macaca_fascicularis
ENSCAFG00020014480	-	94	74.965	ENSMMUG00000030408	-	100	75.141	Macaca_mulatta
ENSCAFG00020014480	-	93	75.000	ENSMNEG00000043786	-	100	75.282	Macaca_nemestrina
ENSCAFG00020014480	-	93	55.915	ENSMLEG00000031179	-	100	58.616	Mandrillus_leucophaeus
ENSCAFG00020014480	-	87	48.132	ENSMAMG00000007623	ptcd1	90	48.132	Mastacembelus_armatus
ENSCAFG00020014480	-	80	48.058	ENSMZEG00005012722	ptcd1	83	48.058	Maylandia_zebra
ENSCAFG00020014480	-	97	53.691	ENSMGAG00000004211	-	95	53.960	Meleagris_gallopavo
ENSCAFG00020014480	-	93	78.612	ENSMICG00000017428	-	100	79.320	Microcebus_murinus
ENSCAFG00020014480	-	83	45.840	ENSMMOG00000020243	ptcd1	92	47.308	Mola_mola
ENSCAFG00020014480	-	92	61.560	ENSMODG00000001350	-	99	61.560	Monodelphis_domestica
ENSCAFG00020014480	-	94	46.667	ENSMALG00000018442	ptcd1	94	46.667	Monopterus_albus
ENSCAFG00020014480	-	92	76.437	MGP_CAROLIEiJ_G0028011	Ptcd1	99	76.580	Mus_caroli
ENSCAFG00020014480	-	92	76.437	ENSMUSG00000029624	Ptcd1	99	76.580	Mus_musculus
ENSCAFG00020014480	-	92	76.547	MGP_PahariEiJ_G0024580	Ptcd1	99	76.691	Mus_pahari
ENSCAFG00020014480	-	92	76.437	MGP_SPRETEiJ_G0029012	Ptcd1	99	76.724	Mus_spretus
ENSCAFG00020014480	-	93	87.642	ENSMPUG00000016518	-	100	87.642	Mustela_putorius_furo
ENSCAFG00020014480	-	94	84.831	ENSMLUG00000010994	-	94	84.831	Myotis_lucifugus
ENSCAFG00020014480	-	80	49.918	ENSNBRG00000010079	ptcd1	86	49.918	Neolamprologus_brichardi
ENSCAFG00020014480	-	73	79.492	ENSNLEG00000011060	-	93	79.492	Nomascus_leucogenys
ENSCAFG00020014480	-	91	62.162	ENSMEUG00000006930	-	99	62.162	Notamacropus_eugenii
ENSCAFG00020014480	-	84	77.442	ENSOPRG00000013647	-	90	77.442	Ochotona_princeps
ENSCAFG00020014480	-	77	49.406	ENSONIG00000003168	ptcd1	95	49.406	Oreochromis_niloticus
ENSCAFG00020014480	-	76	57.592	ENSOANG00000007728	-	75	57.712	Ornithorhynchus_anatinus
ENSCAFG00020014480	-	93	76.977	ENSOCUG00000010584	-	98	76.977	Oryctolagus_cuniculus
ENSCAFG00020014480	-	80	47.890	ENSORLG00000009275	ptcd1	86	47.890	Oryzias_latipes
ENSCAFG00020014480	-	80	47.565	ENSORLG00020000988	ptcd1	86	47.565	Oryzias_latipes_hni
ENSCAFG00020014480	-	80	47.403	ENSORLG00015010557	ptcd1	86	47.403	Oryzias_latipes_hsok
ENSCAFG00020014480	-	80	48.276	ENSOMEG00000020627	ptcd1	88	48.276	Oryzias_melastigma
ENSCAFG00020014480	-	92	74.857	ENSOGAG00000010877	-	100	75.714	Otolemur_garnettii
ENSCAFG00020014480	-	93	75.530	ENSOARG00000018676	-	100	75.530	Ovis_aries
ENSCAFG00020014480	-	93	75.813	ENSPPAG00000036024	-	100	75.813	Pan_paniscus
ENSCAFG00020014480	-	93	88.511	ENSPPRG00000003478	-	100	88.511	Panthera_pardus
ENSCAFG00020014480	-	93	75.813	ENSPTRG00000019452	-	100	75.813	Pan_troglodytes
ENSCAFG00020014480	-	93	75.282	ENSPANG00000016730	-	100	75.565	Papio_anubis
ENSCAFG00020014480	-	84	52.484	ENSPKIG00000014215	ptcd1	92	53.178	Paramormyrops_kingsleyae
ENSCAFG00020014480	-	79	59.406	ENSPSIG00000011184	-	100	59.867	Pelodiscus_sinensis
ENSCAFG00020014480	-	68	41.954	ENSPMAG00000009667	ptcd1	100	41.954	Petromyzon_marinus
ENSCAFG00020014480	-	93	60.541	ENSPCIG00000024778	-	99	60.541	Phascolarctos_cinereus
ENSCAFG00020014480	-	83	47.476	ENSPFOG00000004458	ptcd1	86	48.107	Poecilia_formosa
ENSCAFG00020014480	-	83	47.452	ENSPLAG00000011051	ptcd1	86	48.089	Poecilia_latipinna
ENSCAFG00020014480	-	83	47.476	ENSPMEG00000020547	ptcd1	86	47.476	Poecilia_mexicana
ENSCAFG00020014480	-	82	47.826	ENSPREG00000000059	ptcd1	86	47.604	Poecilia_reticulata
ENSCAFG00020014480	-	88	76.842	ENSPPYG00000017377	-	100	76.842	Pongo_abelii
ENSCAFG00020014480	-	75	81.690	ENSPCAG00000001852	-	89	81.690	Procavia_capensis
ENSCAFG00020014480	-	93	78.895	ENSPCOG00000018596	-	100	79.603	Propithecus_coquereli
ENSCAFG00020014480	-	63	92.000	ENSPVAG00000007529	-	72	92.000	Pteropus_vampyrus
ENSCAFG00020014480	-	80	49.755	ENSPNYG00000019993	ptcd1	83	49.755	Pundamilia_nyererei
ENSCAFG00020014480	-	82	51.817	ENSPNAG00000014931	ptcd1	92	51.618	Pygocentrus_nattereri
ENSCAFG00020014480	-	92	76.293	ENSRNOG00000000987	Ptcd1	99	76.259	Rattus_norvegicus
ENSCAFG00020014480	-	93	75.354	ENSRBIG00000043393	-	100	75.637	Rhinopithecus_bieti
ENSCAFG00020014480	-	93	75.212	ENSRROG00000036420	-	100	75.496	Rhinopithecus_roxellana
ENSCAFG00020014480	-	93	76.620	ENSSBOG00000024114	-	100	76.761	Saimiri_boliviensis_boliviensis
ENSCAFG00020014480	-	92	57.902	ENSSHAG00000011376	-	99	62.290	Sarcophilus_harrisii
ENSCAFG00020014480	-	84	53.692	ENSSFOG00015007909	ptcd1	87	53.846	Scleropages_formosus
ENSCAFG00020014480	-	77	47.386	ENSSMAG00000000218	ptcd1	91	47.723	Scophthalmus_maximus
ENSCAFG00020014480	-	88	46.280	ENSSDUG00000015671	ptcd1	94	46.280	Seriola_dumerili
ENSCAFG00020014480	-	86	46.728	ENSSLDG00000014261	ptcd1	92	46.728	Seriola_lalandi_dorsalis
ENSCAFG00020014480	-	93	53.538	ENSSPUG00000003540	-	99	54.072	Sphenodon_punctatus
ENSCAFG00020014480	-	83	48.980	ENSSPAG00000011049	ptcd1	85	49.137	Stegastes_partitus
ENSCAFG00020014480	-	86	83.103	ENSSSCG00000007622	-	99	82.406	Sus_scrofa
ENSCAFG00020014480	-	81	60.454	ENSTGUG00000007563	-	99	60.778	Taeniopygia_guttata
ENSCAFG00020014480	-	80	46.711	ENSTRUG00000013471	ptcd1	82	46.711	Takifugu_rubripes
ENSCAFG00020014480	-	77	48.718	ENSTNIG00000008271	ptcd1	83	48.718	Tetraodon_nigroviridis
ENSCAFG00020014480	-	93	77.433	ENSTBEG00000011021	-	100	77.433	Tupaia_belangeri
ENSCAFG00020014480	-	93	78.470	ENSTTRG00000003006	-	100	78.470	Tursiops_truncatus
ENSCAFG00020014480	-	93	89.347	ENSUAMG00000008049	-	100	89.347	Ursus_americanus
ENSCAFG00020014480	-	93	97.857	ENSVVUG00000008836	-	100	97.857	Vulpes_vulpes
ENSCAFG00020014480	-	81	54.106	ENSXETG00000009891	ptcd1	90	53.386	Xenopus_tropicalis
ENSCAFG00020014480	-	83	47.596	ENSXMAG00000015540	ptcd1	92	45.362	Xiphophorus_maculatus