EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00020016119 (Gene tree)
Gene ID: 112648622
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Canis_lupus_dingo
Status: putative
Strand: Plus strand
Length: 127330 bases
Position: chrQKWQ01000695.1:11946572-12073901
Accession: 112648622
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00020020365	R3H	PF01424.22	8.5e-12	1	1
ENSCAFP00020020362	R3H	PF01424.22	2.3e-11	1	1
ENSCAFP00020020360	R3H	PF01424.22	2.3e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00020023564	R3HDM1-203	1638	-	ENSCAFP00020020365	545 (aa)	-	-
ENSCAFT00020023559	R3HDM1-201	3411	-	ENSCAFP00020020360	1136 (aa)	XP_025286170	UPI00005A38F7
ENSCAFT00020023561	R3HDM1-202	3309	-	ENSCAFP00020020362	1102 (aa)	XP_025286207	UPI000184A123

Gene Model

Click here to download ENSCAFG00020016119's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00020016119's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00020016119	R3HDM1	89	58.738	ENSCAFG00020023713	R3HDM2	95	59.413
ENSCAFG00020016119	R3HDM1	82	58.584	ENSCAFG00020001655	ARPP21	80	64.848

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00020016119	R3HDM1	100	95.830	ENSG00000048991	R3HDM1	100	95.739	Homo_sapiens
ENSCAFG00020016119	R3HDM1	99	57.321	ENSAPOG00000020850	r3hdm1	97	49.398	Acanthochromis_polyacanthus
ENSCAFG00020016119	R3HDM1	100	99.093	ENSAMEG00000014886	R3HDM1	100	99.093	Ailuropoda_melanoleuca
ENSCAFG00020016119	R3HDM1	80	55.234	ENSACIG00000018791	-	81	57.421	Amphilophus_citrinellus
ENSCAFG00020016119	R3HDM1	99	57.321	ENSAOCG00000005192	r3hdm1	99	48.794	Amphiprion_ocellaris
ENSCAFG00020016119	R3HDM1	99	54.107	ENSAPEG00000016108	r3hdm1	99	46.770	Amphiprion_percula
ENSCAFG00020016119	R3HDM1	92	54.932	ENSATEG00000000232	r3hdm1	99	46.169	Anabas_testudineus
ENSCAFG00020016119	R3HDM1	100	79.783	ENSAPLG00000015231	R3HDM1	100	79.874	Anas_platyrhynchos
ENSCAFG00020016119	R3HDM1	100	79.615	ENSACAG00000001676	R3HDM1	100	79.790	Anolis_carolinensis
ENSCAFG00020016119	R3HDM1	100	95.924	ENSANAG00000035334	R3HDM1	100	95.833	Aotus_nancymaae
ENSCAFG00020016119	R3HDM1	73	63.309	ENSACLG00000027282	r3hdm1	94	49.730	Astatotilapia_calliptera
ENSCAFG00020016119	R3HDM1	82	47.566	ENSAMXG00000020587	arpp21	54	47.085	Astyanax_mexicanus
ENSCAFG00020016119	R3HDM1	93	72.902	ENSAMXG00000012861	R3HDM1	100	72.837	Astyanax_mexicanus
ENSCAFG00020016119	R3HDM1	93	62.731	ENSAMXG00000003536	r3hdm1	100	62.791	Astyanax_mexicanus
ENSCAFG00020016119	R3HDM1	100	96.042	ENSBTAG00000013302	R3HDM1	100	96.042	Bos_taurus
ENSCAFG00020016119	R3HDM1	100	95.830	ENSCJAG00000011718	R3HDM1	100	95.739	Callithrix_jacchus
ENSCAFG00020016119	R3HDM1	100	99.909	ENSCAFG00000005075	R3HDM1	100	99.909	Canis_familiaris
ENSCAFG00020016119	R3HDM1	100	95.920	ENSCHIG00000020851	R3HDM1	100	95.920	Capra_hircus
ENSCAFG00020016119	R3HDM1	54	79.461	ENSCAPG00000013043	-	100	79.461	Cavia_aperea
ENSCAFG00020016119	R3HDM1	100	93.058	ENSCPOG00000012784	R3HDM1	100	93.146	Cavia_porcellus
ENSCAFG00020016119	R3HDM1	100	95.554	ENSCCAG00000027199	R3HDM1	100	95.554	Cebus_capucinus
ENSCAFG00020016119	R3HDM1	99	97.476	ENSCATG00000023642	R3HDM1	100	94.987	Cercocebus_atys
ENSCAFG00020016119	R3HDM1	100	92.355	ENSCLAG00000007962	R3HDM1	100	92.443	Chinchilla_lanigera
ENSCAFG00020016119	R3HDM1	100	95.075	ENSCSAG00000016356	R3HDM1	100	94.899	Chlorocebus_sabaeus
ENSCAFG00020016119	R3HDM1	87	85.048	ENSCHOG00000013638	R3HDM1	91	85.048	Choloepus_hoffmanni
ENSCAFG00020016119	R3HDM1	92	78.327	ENSCPBG00000009645	R3HDM1	100	91.144	Chrysemys_picta_bellii
ENSCAFG00020016119	R3HDM1	100	95.471	ENSCANG00000034748	R3HDM1	100	94.746	Colobus_angolensis_palliatus
ENSCAFG00020016119	R3HDM1	99	92.321	ENSCGRG00001012357	R3hdm1	97	92.321	Cricetulus_griseus_chok1gshd
ENSCAFG00020016119	R3HDM1	100	92.260	ENSCGRG00000012080	R3hdm1	100	92.593	Cricetulus_griseus_crigri
ENSCAFG00020016119	R3HDM1	89	43.384	ENSCSEG00000008944	r3hdm1	92	53.558	Cynoglossus_semilaevis
ENSCAFG00020016119	R3HDM1	99	55.062	ENSCVAG00000007582	r3hdm1	99	47.948	Cyprinodon_variegatus
ENSCAFG00020016119	R3HDM1	80	45.701	ENSDARG00000061081	arpp21	62	40.592	Danio_rerio
ENSCAFG00020016119	R3HDM1	100	92.155	ENSDNOG00000000771	R3HDM1	100	92.155	Dasypus_novemcinctus
ENSCAFG00020016119	R3HDM1	54	94.276	ENSDORG00000027689	-	100	94.276	Dipodomys_ordii
ENSCAFG00020016119	R3HDM1	100	83.590	ENSETEG00000013606	R3HDM1	100	82.264	Echinops_telfairi
ENSCAFG00020016119	R3HDM1	81	51.178	ENSEBUG00000014746	arpp21	97	42.576	Eptatretus_burgeri
ENSCAFG00020016119	R3HDM1	100	97.641	ENSEASG00005007392	R3HDM1	100	99.261	Equus_asinus_asinus
ENSCAFG00020016119	R3HDM1	100	97.913	ENSECAG00000019114	R3HDM1	100	99.261	Equus_caballus
ENSCAFG00020016119	R3HDM1	99	87.638	ENSEEUG00000012589	R3HDM1	91	87.269	Erinaceus_europaeus
ENSCAFG00020016119	R3HDM1	91	63.401	ENSELUG00000004909	R3HDM1	99	55.278	Esox_lucius
ENSCAFG00020016119	R3HDM1	93	50.628	ENSELUG00000014413	r3hdm1	100	51.752	Esox_lucius
ENSCAFG00020016119	R3HDM1	100	98.681	ENSFCAG00000027113	R3HDM1	100	99.754	Felis_catus
ENSCAFG00020016119	R3HDM1	99	79.412	ENSFALG00000013731	R3HDM1	72	75.902	Ficedula_albicollis
ENSCAFG00020016119	R3HDM1	100	92.970	ENSFDAG00000016478	R3HDM1	99	95.387	Fukomys_damarensis
ENSCAFG00020016119	R3HDM1	99	55.714	ENSFHEG00000018713	r3hdm1	100	47.572	Fundulus_heteroclitus
ENSCAFG00020016119	R3HDM1	69	72.441	ENSGMOG00000006042	-	74	68.534	Gadus_morhua
ENSCAFG00020016119	R3HDM1	84	85.948	ENSGALG00000012246	R3HDM1	99	85.902	Gallus_gallus
ENSCAFG00020016119	R3HDM1	79	61.319	ENSGAFG00000006203	r3hdm1	94	49.892	Gambusia_affinis
ENSCAFG00020016119	R3HDM1	80	63.576	ENSGACG00000014925	r3hdm1	99	49.663	Gasterosteus_aculeatus
ENSCAFG00020016119	R3HDM1	99	81.365	ENSGAGG00000007840	R3HDM1	96	83.709	Gopherus_agassizii
ENSCAFG00020016119	R3HDM1	100	95.467	ENSGGOG00000008156	R3HDM1	100	95.376	Gorilla_gorilla
ENSCAFG00020016119	R3HDM1	99	56.553	ENSHBUG00000015737	R3HDM1	90	58.654	Haplochromis_burtoni
ENSCAFG00020016119	R3HDM1	100	93.140	ENSHGLG00000015718	R3HDM1	99	95.203	Heterocephalus_glaber_female
ENSCAFG00020016119	R3HDM1	100	92.876	ENSHGLG00100003184	-	100	92.876	Heterocephalus_glaber_male
ENSCAFG00020016119	R3HDM1	100	69.991	ENSHGLG00100015374	-	100	69.991	Heterocephalus_glaber_male
ENSCAFG00020016119	R3HDM1	73	59.756	ENSHCOG00000013366	r3hdm1	88	59.750	Hippocampus_comes
ENSCAFG00020016119	R3HDM1	50	67.273	ENSHCOG00000005036	-	55	78.947	Hippocampus_comes
ENSCAFG00020016119	R3HDM1	86	67.771	ENSIPUG00000013629	r3hdm1	95	69.375	Ictalurus_punctatus
ENSCAFG00020016119	R3HDM1	94	60.305	ENSIPUG00000001676	R3HDM1	99	66.507	Ictalurus_punctatus
ENSCAFG00020016119	R3HDM1	70	53.571	ENSIPUG00000020552	arpp21	84	44.262	Ictalurus_punctatus
ENSCAFG00020016119	R3HDM1	100	95.376	ENSSTOG00000007572	R3HDM1	99	97.048	Ictidomys_tridecemlineatus
ENSCAFG00020016119	R3HDM1	54	90.909	ENSJJAG00000018208	-	100	90.909	Jaculus_jaculus
ENSCAFG00020016119	R3HDM1	53	77.193	ENSKMAG00000013373	-	89	77.193	Kryptolebias_marmoratus
ENSCAFG00020016119	R3HDM1	90	54.653	ENSLBEG00000027981	-	99	55.248	Labrus_bergylta
ENSCAFG00020016119	R3HDM1	95	73.897	ENSLACG00000005334	R3HDM1	100	74.433	Latimeria_chalumnae
ENSCAFG00020016119	R3HDM1	94	74.237	ENSLOCG00000001641	r3hdm1	100	66.207	Lepisosteus_oculatus
ENSCAFG00020016119	R3HDM1	100	95.511	ENSLAFG00000009065	R3HDM1	100	95.511	Loxodonta_africana
ENSCAFG00020016119	R3HDM1	100	95.739	ENSMFAG00000030331	R3HDM1	100	97.783	Macaca_fascicularis
ENSCAFG00020016119	R3HDM1	100	95.191	ENSMMUG00000009844	R3HDM1	100	95.009	Macaca_mulatta
ENSCAFG00020016119	R3HDM1	100	95.558	ENSMNEG00000027793	R3HDM1	100	97.783	Macaca_nemestrina
ENSCAFG00020016119	R3HDM1	100	95.830	ENSMLEG00000043189	R3HDM1	100	95.739	Mandrillus_leucophaeus
ENSCAFG00020016119	R3HDM1	92	58.301	ENSMAMG00000004532	r3hdm1	92	58.429	Mastacembelus_armatus
ENSCAFG00020016119	R3HDM1	92	58.077	ENSMZEG00005003157	r3hdm1	99	48.353	Maylandia_zebra
ENSCAFG00020016119	R3HDM1	100	79.223	ENSMGAG00000012461	R3HDM1	100	79.133	Meleagris_gallopavo
ENSCAFG00020016119	R3HDM1	100	91.842	ENSMAUG00000010315	R3hdm1	100	92.929	Mesocricetus_auratus
ENSCAFG00020016119	R3HDM1	84	90.566	ENSMICG00000042655	-	100	89.558	Microcebus_murinus
ENSCAFG00020016119	R3HDM1	100	94.656	ENSMICG00000005900	-	100	94.656	Microcebus_murinus
ENSCAFG00020016119	R3HDM1	99	90.346	ENSMOCG00000019833	-	99	94.280	Microtus_ochrogaster
ENSCAFG00020016119	R3HDM1	99	84.477	ENSMODG00000000923	R3HDM1	97	81.766	Monodelphis_domestica
ENSCAFG00020016119	R3HDM1	92	58.349	ENSMALG00000009000	r3hdm1	100	46.477	Monopterus_albus
ENSCAFG00020016119	R3HDM1	100	91.461	MGP_CAROLIEiJ_G0014543	R3hdm1	99	93.542	Mus_caroli
ENSCAFG00020016119	R3HDM1	100	91.549	ENSMUSG00000056211	R3hdm1	99	93.542	Mus_musculus
ENSCAFG00020016119	R3HDM1	100	91.373	MGP_PahariEiJ_G0027779	R3hdm1	99	92.989	Mus_pahari
ENSCAFG00020016119	R3HDM1	100	91.725	MGP_SPRETEiJ_G0015350	R3hdm1	99	93.727	Mus_spretus
ENSCAFG00020016119	R3HDM1	100	98.640	ENSMPUG00000002412	R3HDM1	100	98.640	Mustela_putorius_furo
ENSCAFG00020016119	R3HDM1	100	95.750	ENSMLUG00000013824	R3HDM1	100	95.750	Myotis_lucifugus
ENSCAFG00020016119	R3HDM1	54	92.929	ENSNGAG00000001313	-	100	92.929	Nannospalax_galili
ENSCAFG00020016119	R3HDM1	100	95.648	ENSNLEG00000008622	R3HDM1	100	95.558	Nomascus_leucogenys
ENSCAFG00020016119	R3HDM1	99	74.217	ENSMEUG00000011784	R3HDM1	100	74.033	Notamacropus_eugenii
ENSCAFG00020016119	R3HDM1	100	92.518	ENSODEG00000008607	R3HDM1	100	92.593	Octodon_degus
ENSCAFG00020016119	R3HDM1	87	59.562	ENSONIG00000012017	r3hdm1	98	48.244	Oreochromis_niloticus
ENSCAFG00020016119	R3HDM1	100	82.236	ENSOANG00000007987	R3HDM1	100	82.236	Ornithorhynchus_anatinus
ENSCAFG00020016119	R3HDM1	99	92.818	ENSOCUG00000017366	R3HDM1	98	94.405	Oryctolagus_cuniculus
ENSCAFG00020016119	R3HDM1	92	57.418	ENSORLG00000004297	r3hdm1	99	46.097	Oryzias_latipes
ENSCAFG00020016119	R3HDM1	74	59.712	ENSORLG00020019252	-	93	60.766	Oryzias_latipes_hni
ENSCAFG00020016119	R3HDM1	92	57.611	ENSORLG00015017355	r3hdm1	99	46.712	Oryzias_latipes_hsok
ENSCAFG00020016119	R3HDM1	92	57.582	ENSOMEG00000003882	-	94	58.574	Oryzias_melastigma
ENSCAFG00020016119	R3HDM1	100	94.288	ENSOGAG00000003136	R3HDM1	100	94.288	Otolemur_garnettii
ENSCAFG00020016119	R3HDM1	100	95.648	ENSOARG00000010788	R3HDM1	100	95.558	Ovis_aries
ENSCAFG00020016119	R3HDM1	100	95.656	ENSPPAG00000027858	R3HDM1	100	95.566	Pan_paniscus
ENSCAFG00020016119	R3HDM1	100	98.368	ENSPPRG00000002626	R3HDM1	100	98.368	Panthera_pardus
ENSCAFG00020016119	R3HDM1	100	98.368	ENSPTIG00000016581	R3HDM1	100	98.368	Panthera_tigris_altaica
ENSCAFG00020016119	R3HDM1	99	96.310	ENSPTRG00000012494	R3HDM1	100	95.018	Pan_troglodytes
ENSCAFG00020016119	R3HDM1	100	95.739	ENSPANG00000026448	R3HDM1	100	95.648	Papio_anubis
ENSCAFG00020016119	R3HDM1	84	76.266	ENSPKIG00000004328	r3hdm1	91	76.508	Paramormyrops_kingsleyae
ENSCAFG00020016119	R3HDM1	82	63.920	ENSPKIG00000011224	R3HDM1	90	65.271	Paramormyrops_kingsleyae
ENSCAFG00020016119	R3HDM1	100	78.933	ENSPSIG00000012915	R3HDM1	100	78.843	Pelodiscus_sinensis
ENSCAFG00020016119	R3HDM1	78	55.102	ENSPMGG00000011264	-	92	55.227	Periophthalmus_magnuspinnatus
ENSCAFG00020016119	R3HDM1	100	92.342	ENSPEMG00000015187	R3hdm1	100	92.593	Peromyscus_maniculatus_bairdii
ENSCAFG00020016119	R3HDM1	99	89.074	ENSPCIG00000002491	R3HDM1	100	91.176	Phascolarctos_cinereus
ENSCAFG00020016119	R3HDM1	99	56.071	ENSPFOG00000015036	r3hdm1	99	48.004	Poecilia_formosa
ENSCAFG00020016119	R3HDM1	79	61.419	ENSPLAG00000018042	r3hdm1	95	49.733	Poecilia_latipinna
ENSCAFG00020016119	R3HDM1	79	61.641	ENSPMEG00000023947	r3hdm1	95	49.252	Poecilia_mexicana
ENSCAFG00020016119	R3HDM1	99	55.098	ENSPREG00000007902	r3hdm1	94	60.870	Poecilia_reticulata
ENSCAFG00020016119	R3HDM1	100	94.560	ENSPPYG00000012815	R3HDM1	100	94.470	Pongo_abelii
ENSCAFG00020016119	R3HDM1	100	82.940	ENSPCAG00000006208	R3HDM1	100	82.486	Procavia_capensis
ENSCAFG00020016119	R3HDM1	100	93.025	ENSPCOG00000012698	R3HDM1	100	94.454	Propithecus_coquereli
ENSCAFG00020016119	R3HDM1	99	89.687	ENSPVAG00000006098	R3HDM1	100	87.862	Pteropus_vampyrus
ENSCAFG00020016119	R3HDM1	74	60.482	ENSPNYG00000008701	-	97	61.244	Pundamilia_nyererei
ENSCAFG00020016119	R3HDM1	87	46.058	ENSPNAG00000004162	arpp21	57	58.400	Pygocentrus_nattereri
ENSCAFG00020016119	R3HDM1	93	63.551	ENSPNAG00000013952	r3hdm1	100	63.466	Pygocentrus_nattereri
ENSCAFG00020016119	R3HDM1	83	76.603	ENSPNAG00000005436	R3HDM1	99	76.527	Pygocentrus_nattereri
ENSCAFG00020016119	R3HDM1	100	91.109	ENSRNOG00000004099	R3hdm1	100	91.109	Rattus_norvegicus
ENSCAFG00020016119	R3HDM1	100	93.841	ENSRBIG00000033317	R3HDM1	100	98.893	Rhinopithecus_bieti
ENSCAFG00020016119	R3HDM1	100	95.104	ENSRROG00000034534	R3HDM1	100	94.923	Rhinopithecus_roxellana
ENSCAFG00020016119	R3HDM1	100	95.467	ENSSBOG00000020389	R3HDM1	100	95.376	Saimiri_boliviensis_boliviensis
ENSCAFG00020016119	R3HDM1	99	87.500	ENSSHAG00000016999	R3HDM1	100	85.520	Sarcophilus_harrisii
ENSCAFG00020016119	R3HDM1	93	70.944	ENSSFOG00015014134	r3hdm1	100	70.874	Scleropages_formosus
ENSCAFG00020016119	R3HDM1	94	64.394	ENSSFOG00015019851	-	99	57.397	Scleropages_formosus
ENSCAFG00020016119	R3HDM1	92	57.227	ENSSMAG00000001669	r3hdm1	99	44.991	Scophthalmus_maximus
ENSCAFG00020016119	R3HDM1	92	58.349	ENSSDUG00000010749	r3hdm1	99	48.279	Seriola_dumerili
ENSCAFG00020016119	R3HDM1	92	58.349	ENSSLDG00000004499	r3hdm1	99	47.698	Seriola_lalandi_dorsalis
ENSCAFG00020016119	R3HDM1	69	84.053	ENSSARG00000000352	-	69	84.053	Sorex_araneus
ENSCAFG00020016119	R3HDM1	100	80.939	ENSSPUG00000004167	R3HDM1	100	80.668	Sphenodon_punctatus
ENSCAFG00020016119	R3HDM1	99	57.857	ENSSPAG00000004648	r3hdm1	99	49.803	Stegastes_partitus
ENSCAFG00020016119	R3HDM1	100	97.371	ENSSSCG00000015692	R3HDM1	100	97.371	Sus_scrofa
ENSCAFG00020016119	R3HDM1	99	79.228	ENSTGUG00000011750	R3HDM1	100	74.054	Taeniopygia_guttata
ENSCAFG00020016119	R3HDM1	79	59.556	ENSTRUG00000011654	r3hdm1	93	46.926	Takifugu_rubripes
ENSCAFG00020016119	R3HDM1	80	59.695	ENSTNIG00000010362	r3hdm1	95	46.885	Tetraodon_nigroviridis
ENSCAFG00020016119	R3HDM1	100	89.564	ENSTTRG00000003935	R3HDM1	100	89.564	Tursiops_truncatus
ENSCAFG00020016119	R3HDM1	99	97.238	ENSUAMG00000024806	R3HDM1	99	96.863	Ursus_americanus
ENSCAFG00020016119	R3HDM1	100	94.283	ENSUMAG00000005552	R3HDM1	100	95.922	Ursus_maritimus
ENSCAFG00020016119	R3HDM1	93	100.000	ENSVPAG00000007333	R3HDM1	93	100.000	Vicugna_pacos
ENSCAFG00020016119	R3HDM1	100	99.736	ENSVVUG00000006457	R3HDM1	100	99.736	Vulpes_vulpes
ENSCAFG00020016119	R3HDM1	94	72.658	ENSXETG00000019330	r3hdm1	100	67.706	Xenopus_tropicalis
ENSCAFG00020016119	R3HDM1	73	62.740	ENSXCOG00000017448	r3hdm1	94	50.319	Xiphophorus_couchianus
ENSCAFG00020016119	R3HDM1	92	57.663	ENSXMAG00000007885	r3hdm1	99	48.462	Xiphophorus_maculatus