EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00020017112 (Gene tree)
Gene ID: 112648586
Gene Symbol: RC3H1
Alias: KIAA2025|RNF198|RP5-1198E17.5|roquin
Full Name: ring finger and CCCH-type domains 1
Gene Type: protein_coding
Species: Canis_lupus_dingo
Status: putative
Strand: Plus strand
Length: 39009 bases
Position: chrQKWQ01001577.1:22207738-22246746
Accession: 112648586
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00020021681	zf-CCCH	PF00642.24	6.7e-05	1	1
ENSCAFP00020021672	zf-CCCH	PF00642.24	0.00025	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00020025097	RC3H1-202	1326	-	ENSCAFP00020021681	441 (aa)	-	-
ENSCAFT00020025088	RC3H1-201	3402	-	ENSCAFP00020021672	1133 (aa)	XP_025286043	UPI000DC68B5E

Gene Model

Click here to download ENSCAFG00020017112's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00020017112's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00020017112	RC3H1	99	83.973	ENSCAFG00020015288	RC3H2	94	83.223

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00020017112	RC3H1	99	98.202	ENSG00000135870	RC3H1	100	96.914	Homo_sapiens
ENSCAFG00020017112	RC3H1	100	98.588	ENSAMEG00000015657	RC3H1	100	98.588	Ailuropoda_melanoleuca
ENSCAFG00020017112	RC3H1	99	96.875	ENSAPLG00000005341	RC3H1	100	87.435	Anas_platyrhynchos
ENSCAFG00020017112	RC3H1	99	96.429	ENSACAG00000015271	RC3H1	100	84.965	Anolis_carolinensis
ENSCAFG00020017112	RC3H1	99	98.202	ENSANAG00000036716	RC3H1	100	97.178	Aotus_nancymaae
ENSCAFG00020017112	RC3H1	99	97.978	ENSBTAG00000052708	RC3H1	100	95.767	Bos_taurus
ENSCAFG00020017112	RC3H1	99	98.202	ENSCJAG00000009106	RC3H1	100	96.825	Callithrix_jacchus
ENSCAFG00020017112	RC3H1	100	99.912	ENSCAFG00000014434	RC3H1	100	99.912	Canis_familiaris
ENSCAFG00020017112	RC3H1	99	97.753	ENSCHIG00000002873	RC3H1	100	96.205	Capra_hircus
ENSCAFG00020017112	RC3H1	99	98.202	ENSTSYG00000003913	RC3H1	99	95.146	Carlito_syrichta
ENSCAFG00020017112	RC3H1	99	97.303	ENSCPOG00000004349	RC3H1	100	90.829	Cavia_porcellus
ENSCAFG00020017112	RC3H1	99	98.202	ENSCCAG00000025652	RC3H1	98	97.033	Cebus_capucinus
ENSCAFG00020017112	RC3H1	99	98.202	ENSCATG00000033497	RC3H1	100	97.090	Cercocebus_atys
ENSCAFG00020017112	RC3H1	99	97.978	ENSCLAG00000011267	RC3H1	100	94.533	Chinchilla_lanigera
ENSCAFG00020017112	RC3H1	99	98.202	ENSCSAG00000011823	RC3H1	85	97.238	Chlorocebus_sabaeus
ENSCAFG00020017112	RC3H1	99	97.528	ENSCPBG00000014670	RC3H1	100	88.879	Chrysemys_picta_bellii
ENSCAFG00020017112	RC3H1	100	97.093	ENSCANG00000032120	RC3H1	100	97.093	Colobus_angolensis_palliatus
ENSCAFG00020017112	RC3H1	99	97.978	ENSCGRG00001020812	Rc3h1	100	93.998	Cricetulus_griseus_chok1gshd
ENSCAFG00020017112	RC3H1	99	97.978	ENSCGRG00000011952	Rc3h1	100	93.998	Cricetulus_griseus_crigri
ENSCAFG00020017112	RC3H1	55	95.338	ENSDNOG00000011494	RC3H1	99	95.338	Dasypus_novemcinctus
ENSCAFG00020017112	RC3H1	99	97.978	ENSDORG00000004855	Rc3h1	100	95.234	Dipodomys_ordii
ENSCAFG00020017112	RC3H1	81	97.814	ENSETEG00000012064	RC3H1	87	96.647	Echinops_telfairi
ENSCAFG00020017112	RC3H1	99	98.202	ENSEASG00005017000	RC3H1	100	95.587	Equus_asinus_asinus
ENSCAFG00020017112	RC3H1	99	97.978	ENSECAG00000021208	RC3H1	100	95.410	Equus_caballus
ENSCAFG00020017112	RC3H1	99	80.449	ENSEEUG00000014861	RC3H1	93	82.931	Erinaceus_europaeus
ENSCAFG00020017112	RC3H1	100	97.707	ENSFCAG00000014924	RC3H1	100	97.707	Felis_catus
ENSCAFG00020017112	RC3H1	99	97.528	ENSFALG00000002947	RC3H1	100	85.839	Ficedula_albicollis
ENSCAFG00020017112	RC3H1	99	97.753	ENSFDAG00000013303	RC3H1	100	94.974	Fukomys_damarensis
ENSCAFG00020017112	RC3H1	99	97.303	ENSGALG00000004587	RC3H1	100	86.579	Gallus_gallus
ENSCAFG00020017112	RC3H1	99	97.528	ENSGAGG00000018194	RC3H1	100	87.456	Gopherus_agassizii
ENSCAFG00020017112	RC3H1	99	98.202	ENSGGOG00000005735	RC3H1	100	90.158	Gorilla_gorilla
ENSCAFG00020017112	RC3H1	99	86.742	ENSHGLG00000004183	-	99	89.130	Heterocephalus_glaber_female
ENSCAFG00020017112	RC3H1	99	98.202	ENSHGLG00100008577	RC3H1	100	94.092	Heterocephalus_glaber_male
ENSCAFG00020017112	RC3H1	99	89.310	ENSHCOG00000009753	rc3h1b	93	89.800	Hippocampus_comes
ENSCAFG00020017112	RC3H1	99	97.978	ENSSTOG00000016033	RC3H1	100	96.208	Ictidomys_tridecemlineatus
ENSCAFG00020017112	RC3H1	99	97.978	ENSJJAG00000018915	Rc3h1	100	94.528	Jaculus_jaculus
ENSCAFG00020017112	RC3H1	99	95.506	ENSLACG00000016186	RC3H1	100	77.754	Latimeria_chalumnae
ENSCAFG00020017112	RC3H1	99	98.202	ENSLAFG00000004367	RC3H1	100	96.992	Loxodonta_africana
ENSCAFG00020017112	RC3H1	99	98.202	ENSMFAG00000033725	RC3H1	100	97.002	Macaca_fascicularis
ENSCAFG00020017112	RC3H1	99	98.202	ENSMMUG00000000630	RC3H1	100	96.914	Macaca_mulatta
ENSCAFG00020017112	RC3H1	99	98.202	ENSMNEG00000035968	RC3H1	100	97.090	Macaca_nemestrina
ENSCAFG00020017112	RC3H1	99	98.202	ENSMLEG00000037455	RC3H1	100	97.002	Mandrillus_leucophaeus
ENSCAFG00020017112	RC3H1	99	97.978	ENSMAUG00000020864	Rc3h1	93	94.052	Mesocricetus_auratus
ENSCAFG00020017112	RC3H1	99	98.202	ENSMICG00000003000	RC3H1	100	96.823	Microcebus_murinus
ENSCAFG00020017112	RC3H1	93	93.371	ENSMOCG00000016587	Rc3h1	98	92.992	Microtus_ochrogaster
ENSCAFG00020017112	RC3H1	99	97.753	ENSMODG00000004289	RC3H1	100	91.718	Monodelphis_domestica
ENSCAFG00020017112	RC3H1	99	92.466	ENSMALG00000016581	-	97	92.466	Monopterus_albus
ENSCAFG00020017112	RC3H1	100	92.063	ENSMALG00000016106	rc3h1b	91	92.063	Monopterus_albus
ENSCAFG00020017112	RC3H1	99	97.978	MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.204	Mus_caroli
ENSCAFG00020017112	RC3H1	99	97.978	ENSMUSG00000040423	Rc3h1	100	93.116	Mus_musculus
ENSCAFG00020017112	RC3H1	99	97.978	MGP_PahariEiJ_G0027992	Rc3h1	100	92.851	Mus_pahari
ENSCAFG00020017112	RC3H1	99	97.978	MGP_SPRETEiJ_G0015563	Rc3h1	100	92.939	Mus_spretus
ENSCAFG00020017112	RC3H1	100	97.972	ENSMPUG00000004747	RC3H1	100	97.972	Mustela_putorius_furo
ENSCAFG00020017112	RC3H1	99	97.528	ENSMLUG00000011127	RC3H1	100	95.499	Myotis_lucifugus
ENSCAFG00020017112	RC3H1	99	97.978	ENSNGAG00000011135	Rc3h1	100	95.234	Nannospalax_galili
ENSCAFG00020017112	RC3H1	99	98.202	ENSNLEG00000015327	RC3H1	100	96.825	Nomascus_leucogenys
ENSCAFG00020017112	RC3H1	99	83.259	ENSOPRG00000013068	RC3H1	99	82.903	Ochotona_princeps
ENSCAFG00020017112	RC3H1	99	98.202	ENSODEG00000014185	RC3H1	100	94.444	Octodon_degus
ENSCAFG00020017112	RC3H1	99	97.528	ENSOANG00000000924	RC3H1	100	91.012	Ornithorhynchus_anatinus
ENSCAFG00020017112	RC3H1	99	98.202	ENSOCUG00000004930	RC3H1	98	96.237	Oryctolagus_cuniculus
ENSCAFG00020017112	RC3H1	100	89.604	ENSOGAG00000004044	RC3H1	100	89.604	Otolemur_garnettii
ENSCAFG00020017112	RC3H1	99	97.978	ENSOARG00000013011	RC3H1	100	96.319	Ovis_aries
ENSCAFG00020017112	RC3H1	99	98.202	ENSPPAG00000039253	RC3H1	100	96.916	Pan_paniscus
ENSCAFG00020017112	RC3H1	99	98.202	ENSPPRG00000009007	RC3H1	100	97.176	Panthera_pardus
ENSCAFG00020017112	RC3H1	100	97.540	ENSPTIG00000015326	RC3H1	100	97.540	Panthera_tigris_altaica
ENSCAFG00020017112	RC3H1	99	98.202	ENSPTRG00000001702	RC3H1	100	96.916	Pan_troglodytes
ENSCAFG00020017112	RC3H1	99	98.202	ENSPANG00000008886	RC3H1	100	97.002	Papio_anubis
ENSCAFG00020017112	RC3H1	99	97.303	ENSPSIG00000016181	RC3H1	100	88.869	Pelodiscus_sinensis
ENSCAFG00020017112	RC3H1	99	91.011	ENSPMGG00000015037	rc3h1b	91	91.011	Periophthalmus_magnuspinnatus
ENSCAFG00020017112	RC3H1	99	97.978	ENSPEMG00000011966	Rc3h1	100	93.469	Peromyscus_maniculatus_bairdii
ENSCAFG00020017112	RC3H1	56	88.538	ENSPMAG00000000074	rc3h1a	100	56.090	Petromyzon_marinus
ENSCAFG00020017112	RC3H1	100	98.194	ENSPCIG00000002058	RC3H1	95	98.864	Phascolarctos_cinereus
ENSCAFG00020017112	RC3H1	99	98.202	ENSPPYG00000000490	RC3H1	98	96.364	Pongo_abelii
ENSCAFG00020017112	RC3H1	80	100.000	ENSPCAG00000010775	RC3H1	87	100.000	Procavia_capensis
ENSCAFG00020017112	RC3H1	83	96.368	ENSPCOG00000021795	RC3H1	96	96.368	Propithecus_coquereli
ENSCAFG00020017112	RC3H1	100	87.908	ENSPVAG00000007593	RC3H1	100	87.908	Pteropus_vampyrus
ENSCAFG00020017112	RC3H1	99	91.818	ENSPNAG00000017240	rc3h1b	97	88.865	Pygocentrus_nattereri
ENSCAFG00020017112	RC3H1	99	91.136	ENSPNAG00000023439	rc3h1a	96	90.930	Pygocentrus_nattereri
ENSCAFG00020017112	RC3H1	99	98.202	ENSRBIG00000037743	RC3H1	100	97.004	Rhinopithecus_bieti
ENSCAFG00020017112	RC3H1	99	98.202	ENSRROG00000036546	RC3H1	100	96.914	Rhinopithecus_roxellana
ENSCAFG00020017112	RC3H1	93	87.879	ENSSBOG00000010664	RC3H1	100	90.918	Saimiri_boliviensis_boliviensis
ENSCAFG00020017112	RC3H1	99	97.753	ENSSHAG00000007589	RC3H1	100	90.933	Sarcophilus_harrisii
ENSCAFG00020017112	RC3H1	99	85.811	ENSSARG00000004660	RC3H1	86	86.712	Sorex_araneus
ENSCAFG00020017112	RC3H1	99	89.593	ENSSPUG00000018472	RC3H1	100	83.260	Sphenodon_punctatus
ENSCAFG00020017112	RC3H1	99	98.202	ENSSSCG00000015498	RC3H1	100	96.999	Sus_scrofa
ENSCAFG00020017112	RC3H1	99	97.303	ENSTGUG00000004090	RC3H1	100	86.831	Taeniopygia_guttata
ENSCAFG00020017112	RC3H1	99	98.202	ENSTBEG00000005015	RC3H1	89	97.275	Tupaia_belangeri
ENSCAFG00020017112	RC3H1	99	97.978	ENSTTRG00000008572	RC3H1	100	96.479	Tursiops_truncatus
ENSCAFG00020017112	RC3H1	100	97.617	ENSUAMG00000019525	RC3H1	100	97.617	Ursus_americanus
ENSCAFG00020017112	RC3H1	100	98.148	ENSUMAG00000020087	RC3H1	100	98.148	Ursus_maritimus
ENSCAFG00020017112	RC3H1	99	97.738	ENSVPAG00000002591	RC3H1	92	98.649	Vicugna_pacos
ENSCAFG00020017112	RC3H1	100	99.546	ENSVVUG00000014201	RC3H1	100	99.384	Vulpes_vulpes
ENSCAFG00020017112	RC3H1	99	95.768	ENSXETG00000020030	rc3h1	100	77.758	Xenopus_tropicalis