EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00020018168 (Gene tree)
Gene ID: -
Gene Symbol: LSM7
Alias: YNL147W
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Canis_lupus_dingo
Status: putative
Strand: Minus strand
Length: 5327 bases
Position: chrQKWQ01000751.1:1427559-1432885
Accession: 20470
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00020022988	LSM	PF01423.22	6.1e-21	1	1
ENSCAFP00020022990	LSM	PF01423.22	1.1e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00020026601	LSM7-202	631	-	ENSCAFP00020022990	157 (aa)	-	-
ENSCAFT00020026599	LSM7-201	570	-	ENSCAFP00020022988	136 (aa)	-	-

Gene Model

Click here to download ENSCAFG00020018168's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00020018168's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00020018168	LSM7	58	36.709	ENSCAFG00020007381	-	84	36.709
ENSCAFG00020018168	LSM7	52	38.028	ENSCAFG00020001862	-	83	40.845

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00020018168	LSM7	74	99.010	ENSG00000130332	LSM7	100	100.000	Homo_sapiens
ENSCAFG00020018168	LSM7	70	93.684	ENSAPOG00000015573	lsm7	82	93.684	Acanthochromis_polyacanthus
ENSCAFG00020018168	LSM7	75	99.020	ENSAMEG00000005484	LSM7	99	100.000	Ailuropoda_melanoleuca
ENSCAFG00020018168	LSM7	71	93.814	ENSACIG00000006498	lsm7	77	93.814	Amphilophus_citrinellus
ENSCAFG00020018168	LSM7	74	95.000	ENSAOCG00000001077	lsm7	94	93.204	Amphiprion_ocellaris
ENSCAFG00020018168	LSM7	74	95.000	ENSAPEG00000024447	lsm7	94	93.204	Amphiprion_percula
ENSCAFG00020018168	LSM7	74	95.000	ENSAPEG00000000694	lsm7	98	94.059	Amphiprion_percula
ENSCAFG00020018168	LSM7	74	95.000	ENSATEG00000008557	lsm7	98	94.059	Anabas_testudineus
ENSCAFG00020018168	LSM7	74	99.010	ENSANAG00000037196	-	98	99.010	Aotus_nancymaae
ENSCAFG00020018168	LSM7	74	91.089	ENSANAG00000022222	-	98	91.089	Aotus_nancymaae
ENSCAFG00020018168	LSM7	74	94.000	ENSACLG00000021021	lsm7	98	93.069	Astatotilapia_calliptera
ENSCAFG00020018168	LSM7	74	95.000	ENSAMXG00000037622	lsm7	98	94.059	Astyanax_mexicanus
ENSCAFG00020018168	LSM7	74	99.010	ENSBTAG00000004521	LSM7	98	99.010	Bos_taurus
ENSCAFG00020018168	LSM7	75	55.882	WBGene00003081	lsm-7	98	55.882	Caenorhabditis_elegans
ENSCAFG00020018168	LSM7	75	99.020	ENSCAFG00000019409	LSM7	100	100.000	Canis_familiaris
ENSCAFG00020018168	LSM7	75	98.039	ENSCHIG00000023663	LSM7	99	99.020	Capra_hircus
ENSCAFG00020018168	LSM7	52	98.592	ENSCAPG00000014534	LSM7	100	98.592	Cavia_aperea
ENSCAFG00020018168	LSM7	74	99.010	ENSCPOG00000014025	LSM7	100	99.010	Cavia_porcellus
ENSCAFG00020018168	LSM7	74	99.010	ENSCCAG00000035456	LSM7	99	99.010	Cebus_capucinus
ENSCAFG00020018168	LSM7	74	99.010	ENSCATG00000023543	LSM7	98	99.010	Cercocebus_atys
ENSCAFG00020018168	LSM7	74	99.010	ENSCLAG00000011635	LSM7	98	99.010	Chinchilla_lanigera
ENSCAFG00020018168	LSM7	74	99.010	ENSCSAG00000011599	LSM7	98	99.010	Chlorocebus_sabaeus
ENSCAFG00020018168	LSM7	51	95.714	ENSCPBG00000021317	LSM7	76	94.366	Chrysemys_picta_bellii
ENSCAFG00020018168	LSM7	71	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSCAFG00020018168	LSM7	74	99.010	ENSCANG00000035525	LSM7	98	99.010	Colobus_angolensis_palliatus
ENSCAFG00020018168	LSM7	66	87.778	ENSCGRG00001016005	-	92	87.778	Cricetulus_griseus_chok1gshd
ENSCAFG00020018168	LSM7	74	98.020	ENSCGRG00001000807	-	98	98.020	Cricetulus_griseus_chok1gshd
ENSCAFG00020018168	LSM7	66	87.778	ENSCGRG00000006821	-	92	87.778	Cricetulus_griseus_crigri
ENSCAFG00020018168	LSM7	76	96.117	ENSCGRG00000014355	-	98	98.039	Cricetulus_griseus_crigri
ENSCAFG00020018168	LSM7	74	95.000	ENSCSEG00000014900	lsm7	89	91.429	Cynoglossus_semilaevis
ENSCAFG00020018168	LSM7	75	94.118	ENSCVAG00000021091	lsm7	94	94.118	Cyprinodon_variegatus
ENSCAFG00020018168	LSM7	74	95.000	ENSDARG00000058328	lsm7	98	94.059	Danio_rerio
ENSCAFG00020018168	LSM7	74	99.010	ENSDORG00000024460	Lsm7	99	99.010	Dipodomys_ordii
ENSCAFG00020018168	LSM7	71	77.551	FBgn0261068	LSm7	89	77.551	Drosophila_melanogaster
ENSCAFG00020018168	LSM7	75	95.098	ENSETEG00000012788	LSM7	100	96.078	Echinops_telfairi
ENSCAFG00020018168	LSM7	61	57.831	ENSEBUG00000010470	-	79	57.831	Eptatretus_burgeri
ENSCAFG00020018168	LSM7	74	84.158	ENSEBUG00000016992	lsm7	98	84.314	Eptatretus_burgeri
ENSCAFG00020018168	LSM7	74	95.050	ENSECAG00000001440	LSM7	88	76.812	Equus_caballus
ENSCAFG00020018168	LSM7	74	100.000	ENSFCAG00000003445	LSM7	98	100.000	Felis_catus
ENSCAFG00020018168	LSM7	74	97.000	ENSFALG00000011912	LSM7	99	97.000	Ficedula_albicollis
ENSCAFG00020018168	LSM7	71	98.958	ENSFDAG00000007661	LSM7	100	98.958	Fukomys_damarensis
ENSCAFG00020018168	LSM7	67	95.604	ENSFHEG00000006349	lsm7	90	95.050	Fundulus_heteroclitus
ENSCAFG00020018168	LSM7	74	92.079	ENSGMOG00000013320	lsm7	99	92.157	Gadus_morhua
ENSCAFG00020018168	LSM7	74	96.000	ENSGAFG00000013902	lsm7	98	95.050	Gambusia_affinis
ENSCAFG00020018168	LSM7	75	92.157	ENSGACG00000010390	lsm7	99	93.137	Gasterosteus_aculeatus
ENSCAFG00020018168	LSM7	74	99.010	ENSGGOG00000010172	LSM7	98	99.010	Gorilla_gorilla
ENSCAFG00020018168	LSM7	74	94.000	ENSHBUG00000004616	lsm7	98	93.069	Haplochromis_burtoni
ENSCAFG00020018168	LSM7	74	99.010	ENSHGLG00000010587	LSM7	98	99.010	Heterocephalus_glaber_female
ENSCAFG00020018168	LSM7	74	99.010	ENSHGLG00100000852	LSM7	98	99.010	Heterocephalus_glaber_male
ENSCAFG00020018168	LSM7	74	94.000	ENSHCOG00000020252	lsm7	100	93.069	Hippocampus_comes
ENSCAFG00020018168	LSM7	74	95.000	ENSIPUG00000024724	lsm7	98	94.059	Ictalurus_punctatus
ENSCAFG00020018168	LSM7	74	99.010	ENSSTOG00000028372	LSM7	99	99.010	Ictidomys_tridecemlineatus
ENSCAFG00020018168	LSM7	74	97.030	ENSJJAG00000001936	Lsm7	98	97.030	Jaculus_jaculus
ENSCAFG00020018168	LSM7	74	96.000	ENSKMAG00000022151	lsm7	98	95.050	Kryptolebias_marmoratus
ENSCAFG00020018168	LSM7	74	95.000	ENSLBEG00000005203	lsm7	98	94.059	Labrus_bergylta
ENSCAFG00020018168	LSM7	74	98.020	ENSLACG00000015700	LSM7	98	98.020	Latimeria_chalumnae
ENSCAFG00020018168	LSM7	74	97.030	ENSLOCG00000004356	lsm7	98	98.020	Lepisosteus_oculatus
ENSCAFG00020018168	LSM7	76	97.087	ENSLAFG00000029302	LSM7	99	99.020	Loxodonta_africana
ENSCAFG00020018168	LSM7	74	99.010	ENSMFAG00000044572	LSM7	98	99.010	Macaca_fascicularis
ENSCAFG00020018168	LSM7	74	99.010	ENSMMUG00000000452	LSM7	99	99.010	Macaca_mulatta
ENSCAFG00020018168	LSM7	74	99.010	ENSMNEG00000004393	LSM7	98	99.010	Macaca_nemestrina
ENSCAFG00020018168	LSM7	74	99.010	ENSMLEG00000030852	LSM7	100	99.010	Mandrillus_leucophaeus
ENSCAFG00020018168	LSM7	74	94.000	ENSMAMG00000005410	lsm7	98	93.069	Mastacembelus_armatus
ENSCAFG00020018168	LSM7	74	94.000	ENSMZEG00005028055	lsm7	98	93.069	Maylandia_zebra
ENSCAFG00020018168	LSM7	74	98.000	ENSMGAG00000000750	LSM7	98	86.441	Meleagris_gallopavo
ENSCAFG00020018168	LSM7	75	97.059	ENSMAUG00000009276	Lsm7	99	98.039	Mesocricetus_auratus
ENSCAFG00020018168	LSM7	74	99.010	ENSMICG00000028619	-	98	99.010	Microcebus_murinus
ENSCAFG00020018168	LSM7	74	99.010	ENSMICG00000009988	-	98	99.010	Microcebus_murinus
ENSCAFG00020018168	LSM7	74	98.020	ENSMOCG00000016925	Lsm7	98	98.020	Microtus_ochrogaster
ENSCAFG00020018168	LSM7	74	95.000	ENSMMOG00000019645	lsm7	96	94.059	Mola_mola
ENSCAFG00020018168	LSM7	74	99.000	ENSMODG00000004722	LSM7	97	99.000	Monodelphis_domestica
ENSCAFG00020018168	LSM7	98	78.195	ENSMALG00000014511	lsm7	98	78.195	Monopterus_albus
ENSCAFG00020018168	LSM7	74	97.030	MGP_CAROLIEiJ_G0015607	Lsm7	98	97.030	Mus_caroli
ENSCAFG00020018168	LSM7	74	97.030	ENSMUSG00000035215	Lsm7	98	97.030	Mus_musculus
ENSCAFG00020018168	LSM7	74	97.030	MGP_PahariEiJ_G0031020	Lsm7	98	97.030	Mus_pahari
ENSCAFG00020018168	LSM7	74	97.030	MGP_SPRETEiJ_G0016425	Lsm7	98	97.030	Mus_spretus
ENSCAFG00020018168	LSM7	75	97.059	ENSMLUG00000013097	-	99	98.039	Myotis_lucifugus
ENSCAFG00020018168	LSM7	74	91.089	ENSMLUG00000024002	-	93	91.089	Myotis_lucifugus
ENSCAFG00020018168	LSM7	74	97.030	ENSNGAG00000021637	Lsm7	98	97.030	Nannospalax_galili
ENSCAFG00020018168	LSM7	86	83.761	ENSNBRG00000001237	-	94	83.761	Neolamprologus_brichardi
ENSCAFG00020018168	LSM7	78	88.679	ENSNBRG00000015770	lsm7	91	90.476	Neolamprologus_brichardi
ENSCAFG00020018168	LSM7	74	99.010	ENSNLEG00000002265	LSM7	98	99.010	Nomascus_leucogenys
ENSCAFG00020018168	LSM7	74	78.218	ENSODEG00000008190	-	98	78.218	Octodon_degus
ENSCAFG00020018168	LSM7	74	92.079	ENSODEG00000018769	-	98	92.079	Octodon_degus
ENSCAFG00020018168	LSM7	74	99.010	ENSODEG00000013590	-	98	99.010	Octodon_degus
ENSCAFG00020018168	LSM7	77	90.476	ENSONIG00000001801	lsm7	91	90.476	Oreochromis_niloticus
ENSCAFG00020018168	LSM7	74	95.000	ENSORLG00000023951	lsm7	98	94.059	Oryzias_latipes
ENSCAFG00020018168	LSM7	74	95.000	ENSORLG00020022226	lsm7	98	94.059	Oryzias_latipes_hni
ENSCAFG00020018168	LSM7	76	92.233	ENSORLG00015020044	lsm7	94	93.137	Oryzias_latipes_hsok
ENSCAFG00020018168	LSM7	76	93.204	ENSOMEG00000012806	lsm7	98	94.059	Oryzias_melastigma
ENSCAFG00020018168	LSM7	75	96.078	ENSOGAG00000000144	-	100	97.059	Otolemur_garnettii
ENSCAFG00020018168	LSM7	74	87.129	ENSOGAG00000024373	-	98	87.129	Otolemur_garnettii
ENSCAFG00020018168	LSM7	75	98.039	ENSOARG00000014013	LSM7	99	99.020	Ovis_aries
ENSCAFG00020018168	LSM7	74	99.010	ENSPPAG00000026500	LSM7	98	99.010	Pan_paniscus
ENSCAFG00020018168	LSM7	74	100.000	ENSPPRG00000008624	LSM7	98	100.000	Panthera_pardus
ENSCAFG00020018168	LSM7	74	100.000	ENSPTIG00000016252	LSM7	98	100.000	Panthera_tigris_altaica
ENSCAFG00020018168	LSM7	74	99.010	ENSPTRG00000010233	LSM7	98	99.010	Pan_troglodytes
ENSCAFG00020018168	LSM7	74	99.010	ENSPANG00000020668	LSM7	98	99.010	Papio_anubis
ENSCAFG00020018168	LSM7	74	97.000	ENSPKIG00000011325	lsm7	97	97.000	Paramormyrops_kingsleyae
ENSCAFG00020018168	LSM7	74	97.030	ENSPSIG00000017149	LSM7	89	97.030	Pelodiscus_sinensis
ENSCAFG00020018168	LSM7	74	95.000	ENSPMGG00000006498	lsm7	98	94.059	Periophthalmus_magnuspinnatus
ENSCAFG00020018168	LSM7	74	99.000	ENSPCIG00000030454	LSM7	98	99.000	Phascolarctos_cinereus
ENSCAFG00020018168	LSM7	74	94.059	ENSPFOG00000012467	lsm7	90	94.118	Poecilia_formosa
ENSCAFG00020018168	LSM7	75	93.137	ENSPLAG00000000252	lsm7	94	94.059	Poecilia_latipinna
ENSCAFG00020018168	LSM7	74	95.000	ENSPMEG00000000587	lsm7	94	94.059	Poecilia_mexicana
ENSCAFG00020018168	LSM7	59	72.840	ENSPREG00000016718	lsm7	63	74.684	Poecilia_reticulata
ENSCAFG00020018168	LSM7	95	59.060	ENSPPYG00000009348	-	50	95.890	Pongo_abelii
ENSCAFG00020018168	LSM7	74	99.010	ENSPCOG00000017177	LSM7	99	99.010	Propithecus_coquereli
ENSCAFG00020018168	LSM7	74	94.000	ENSPNYG00000006938	lsm7	98	93.069	Pundamilia_nyererei
ENSCAFG00020018168	LSM7	74	95.000	ENSPNAG00000010141	lsm7	99	94.059	Pygocentrus_nattereri
ENSCAFG00020018168	LSM7	74	97.030	ENSRNOG00000019552	Lsm7	98	97.030	Rattus_norvegicus
ENSCAFG00020018168	LSM7	74	99.010	ENSRBIG00000035978	LSM7	98	99.010	Rhinopithecus_bieti
ENSCAFG00020018168	LSM7	74	99.010	ENSRROG00000034044	LSM7	98	99.010	Rhinopithecus_roxellana
ENSCAFG00020018168	LSM7	63	49.438	YNL147W	-	92	46.226	Saccharomyces_cerevisiae
ENSCAFG00020018168	LSM7	74	99.010	ENSSBOG00000034899	LSM7	98	99.010	Saimiri_boliviensis_boliviensis
ENSCAFG00020018168	LSM7	74	95.000	ENSSFOG00015006728	lsm7	98	94.059	Scleropages_formosus
ENSCAFG00020018168	LSM7	78	91.509	ENSSMAG00000004195	lsm7	96	91.509	Scophthalmus_maximus
ENSCAFG00020018168	LSM7	74	95.000	ENSSDUG00000001863	lsm7	98	94.059	Seriola_dumerili
ENSCAFG00020018168	LSM7	74	95.000	ENSSLDG00000016339	lsm7	98	94.059	Seriola_lalandi_dorsalis
ENSCAFG00020018168	LSM7	86	85.470	ENSSPAG00000015221	lsm7	98	94.059	Stegastes_partitus
ENSCAFG00020018168	LSM7	74	99.010	ENSSSCG00000013463	LSM7	99	99.010	Sus_scrofa
ENSCAFG00020018168	LSM7	74	97.000	ENSTGUG00000000067	LSM7	99	97.000	Taeniopygia_guttata
ENSCAFG00020018168	LSM7	74	95.000	ENSTRUG00000022913	lsm7	98	94.059	Takifugu_rubripes
ENSCAFG00020018168	LSM7	74	95.000	ENSTNIG00000015525	lsm7	98	94.059	Tetraodon_nigroviridis
ENSCAFG00020018168	LSM7	51	87.143	ENSTBEG00000016602	LSM7	100	87.143	Tupaia_belangeri
ENSCAFG00020018168	LSM7	88	87.500	ENSUAMG00000000912	LSM7	100	98.333	Ursus_americanus
ENSCAFG00020018168	LSM7	74	100.000	ENSUMAG00000006556	LSM7	81	98.077	Ursus_maritimus
ENSCAFG00020018168	LSM7	52	100.000	ENSVVUG00000002640	LSM7	65	100.000	Vulpes_vulpes
ENSCAFG00020018168	LSM7	74	95.000	ENSXETG00000022166	lsm7	100	94.059	Xenopus_tropicalis
ENSCAFG00020018168	LSM7	74	96.000	ENSXCOG00000002572	lsm7	99	95.050	Xiphophorus_couchianus
ENSCAFG00020018168	LSM7	74	96.000	ENSXMAG00000018630	lsm7	98	95.050	Xiphophorus_maculatus