EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCAFG00020018754 (Gene tree)
Gene ID
112662178
Gene Symbol
PUF60
Alias
FIR|RoBPI|SIAHBP1
Full Name
poly(U) binding splicing factor 60
Gene Type
protein_coding
Species
Canis_lupus_dingo
Status
putative
Strand
Minus strand
Length
12382 bases
Position
chrQKWQ01000609.1:37769195-37781576
Accession
112662178
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCAFP00020023823RRM_1PF00076.222.3e-4312
ENSCAFP00020023823RRM_1PF00076.222.3e-4322
ENSCAFP00020023829RRM_1PF00076.222.4e-4312
ENSCAFP00020023829RRM_1PF00076.222.4e-4322
ENSCAFP00020023817RRM_1PF00076.222.6e-4312
ENSCAFP00020023817RRM_1PF00076.222.6e-4322
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCAFT00020027508PUF60-2011998XM_025450726ENSCAFP00020023817560 (aa)XP_025306511UPI00005A29BD
ENSCAFT00020027514PUF60-2021947XM_025450728ENSCAFP00020023823543 (aa)XP_025306513UPI00005A29C2
ENSCAFT00020027520PUF60-2031908-ENSCAFP00020023829530 (aa)XP_025306515UPI00005A29C0
Gene Model
Click here to download ENSCAFG00020018754's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00020018754's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCAFG00020018754PUF605136.000ENSCAFG00020015445U2AF26037.255
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCAFG00020018754PUF6010099.623ENSG00000179950PUF6010099.623Homo_sapiens
ENSCAFG00020018754PUF609885.579ENSAPOG00000001713puf60b9985.606Acanthochromis_polyacanthus
ENSCAFG00020018754PUF609997.138ENSAMEG00000006406PUF609997.138Ailuropoda_melanoleuca
ENSCAFG00020018754PUF609785.413ENSACIG00000021705puf60b10085.413Amphilophus_citrinellus
ENSCAFG00020018754PUF609777.351ENSACIG00000003263-9977.778Amphilophus_citrinellus
ENSCAFG00020018754PUF6010080.899ENSAOCG00000015558-10081.461Amphiprion_ocellaris
ENSCAFG00020018754PUF609885.579ENSAOCG00000005395puf60b10086.372Amphiprion_ocellaris
ENSCAFG00020018754PUF609880.076ENSAPEG00000011923puf60b9982.779Amphiprion_percula
ENSCAFG00020018754PUF609772.745ENSAPEG00000001836-9976.667Amphiprion_percula
ENSCAFG00020018754PUF609980.566ENSATEG00000006303-9981.524Anabas_testudineus
ENSCAFG00020018754PUF609885.389ENSATEG00000001730puf60b9985.417Anabas_testudineus
ENSCAFG00020018754PUF609898.467ENSAPLG00000010150PUF6010098.467Anas_platyrhynchos
ENSCAFG00020018754PUF609996.388ENSACAG00000001645PUF609896.212Anolis_carolinensis
ENSCAFG00020018754PUF6010099.623ENSANAG00000018626PUF6010099.623Aotus_nancymaae
ENSCAFG00020018754PUF609785.413ENSACLG00000004462puf60b10085.413Astatotilapia_calliptera
ENSCAFG00020018754PUF609776.449ENSAMXG00000041030puf60b10074.719Astyanax_mexicanus
ENSCAFG00020018754PUF609884.299ENSAMXG00000036570puf60a9784.932Astyanax_mexicanus
ENSCAFG00020018754PUF6010099.623ENSBTAG00000037493PUF6010099.623Bos_taurus
ENSCAFG00020018754PUF608050.162WBGene00004389rnp-68353.497Caenorhabditis_elegans
ENSCAFG00020018754PUF6010099.811ENSCJAG00000021485PUF6010099.811Callithrix_jacchus
ENSCAFG00020018754PUF60100100.000ENSCAFG00000001400PUF60100100.000Canis_familiaris
ENSCAFG00020018754PUF609999.275ENSCHIG00000001618PUF609299.275Capra_hircus
ENSCAFG00020018754PUF6010099.811ENSTSYG00000011912PUF60100100.000Carlito_syrichta
ENSCAFG00020018754PUF609993.739ENSCPOG00000014613PUF609993.739Cavia_porcellus
ENSCAFG00020018754PUF6010099.623ENSCCAG00000007744PUF6010099.623Cebus_capucinus
ENSCAFG00020018754PUF6010099.623ENSCATG00000035405PUF6010099.623Cercocebus_atys
ENSCAFG00020018754PUF6010099.113ENSCLAG00000009154PUF6010099.113Chinchilla_lanigera
ENSCAFG00020018754PUF609799.612ENSCSAG00000008878PUF6010099.612Chlorocebus_sabaeus
ENSCAFG00020018754PUF609998.106ENSCPBG00000005595PUF609998.106Chrysemys_picta_bellii
ENSCAFG00020018754PUF6010047.993ENSCING00000008436-10047.970Ciona_intestinalis
ENSCAFG00020018754PUF606259.882ENSCING00000002156-8763.043Ciona_intestinalis
ENSCAFG00020018754PUF609549.605ENSCSAVG00000004765-9750.412Ciona_savignyi
ENSCAFG00020018754PUF609555.556ENSCSAVG00000001385-9955.192Ciona_savignyi
ENSCAFG00020018754PUF608099.312ENSCANG00000041843PUF6010099.520Colobus_angolensis_palliatus
ENSCAFG00020018754PUF6010098.404ENSCGRG00001017442Puf6010098.404Cricetulus_griseus_chok1gshd
ENSCAFG00020018754PUF609899.042ENSCGRG00000003717Puf609997.662Cricetulus_griseus_crigri
ENSCAFG00020018754PUF609884.820ENSCSEG00000019887puf60b9384.630Cynoglossus_semilaevis
ENSCAFG00020018754PUF609971.269ENSCSEG00000014845-8977.273Cynoglossus_semilaevis
ENSCAFG00020018754PUF609784.645ENSCVAG00000009386puf60b10085.797Cyprinodon_variegatus
ENSCAFG00020018754PUF608980.000ENSCVAG00000001560-9879.747Cyprinodon_variegatus
ENSCAFG00020018754PUF609786.932ENSDARG00000032175puf60a9994.043Danio_rerio
ENSCAFG00020018754PUF609778.947ENSDARG00000001241puf60b9996.032Danio_rerio
ENSCAFG00020018754PUF609981.835ENSDNOG00000043278PUF609881.835Dasypus_novemcinctus
ENSCAFG00020018754PUF609999.457ENSDORG00000004585Puf6010099.457Dipodomys_ordii
ENSCAFG00020018754PUF609548.969FBgn0028577hfp9945.989Drosophila_melanogaster
ENSCAFG00020018754PUF609570.040ENSEBUG00000005470-8872.222Eptatretus_burgeri
ENSCAFG00020018754PUF609860.672ENSEBUG00000014291puf60b8565.739Eptatretus_burgeri
ENSCAFG00020018754PUF60100100.000ENSEASG00005009695PUF60100100.000Equus_asinus_asinus
ENSCAFG00020018754PUF609999.819ENSECAG00000024681PUF609999.819Equus_caballus
ENSCAFG00020018754PUF6010084.572ENSELUG00000018443-9985.799Esox_lucius
ENSCAFG00020018754PUF6010082.210ENSELUG00000006507puf60b10079.464Esox_lucius
ENSCAFG00020018754PUF6010099.623ENSFCAG00000001045PUF6010099.623Felis_catus
ENSCAFG00020018754PUF609985.878ENSFALG00000001136PUF609987.048Ficedula_albicollis
ENSCAFG00020018754PUF6010098.759ENSFDAG00000017177PUF6010098.759Fukomys_damarensis
ENSCAFG00020018754PUF6010083.551ENSFHEG00000020046puf60b10086.180Fundulus_heteroclitus
ENSCAFG00020018754PUF609379.317ENSFHEG00000021687PUF6010080.164Fundulus_heteroclitus
ENSCAFG00020018754PUF609871.805ENSGMOG00000006392puf60b10071.053Gadus_morhua
ENSCAFG00020018754PUF606598.547ENSGALG00000039901PUF609498.547Gallus_gallus
ENSCAFG00020018754PUF609779.537ENSGAFG00000004334-9979.042Gambusia_affinis
ENSCAFG00020018754PUF6010082.804ENSGAFG00000021040puf60b10085.605Gambusia_affinis
ENSCAFG00020018754PUF6010073.371ENSGACG00000004717puf60b10072.710Gasterosteus_aculeatus
ENSCAFG00020018754PUF609969.639ENSGACG00000001484-10069.423Gasterosteus_aculeatus
ENSCAFG00020018754PUF609998.106ENSGAGG00000013289PUF609398.106Gopherus_agassizii
ENSCAFG00020018754PUF6010099.623ENSGGOG00000004646PUF6010099.623Gorilla_gorilla
ENSCAFG00020018754PUF609884.630ENSHBUG00000015118puf60b10085.413Haplochromis_burtoni
ENSCAFG00020018754PUF609981.203ENSHBUG00000009634-10082.738Haplochromis_burtoni
ENSCAFG00020018754PUF6010098.759ENSHGLG00000006111PUF6010098.759Heterocephalus_glaber_female
ENSCAFG00020018754PUF6010098.759ENSHGLG00100012362PUF6010098.759Heterocephalus_glaber_male
ENSCAFG00020018754PUF609882.136ENSHCOG00000015541puf60b10081.734Hippocampus_comes
ENSCAFG00020018754PUF609666.798ENSHCOG00000000378-9965.038Hippocampus_comes
ENSCAFG00020018754PUF609782.420ENSIPUG00000002453puf60a9982.798Ictalurus_punctatus
ENSCAFG00020018754PUF609778.759ENSIPUG00000004660puf60b9978.531Ictalurus_punctatus
ENSCAFG00020018754PUF6010099.464ENSSTOG00000025037PUF6010099.464Ictidomys_tridecemlineatus
ENSCAFG00020018754PUF6010099.110ENSJJAG00000001076Puf6010099.110Jaculus_jaculus
ENSCAFG00020018754PUF609785.029ENSKMAG00000016745puf60b10086.180Kryptolebias_marmoratus
ENSCAFG00020018754PUF609778.450ENSKMAG00000010106-10075.933Kryptolebias_marmoratus
ENSCAFG00020018754PUF609983.117ENSLBEG00000012505puf60b10083.117Labrus_bergylta
ENSCAFG00020018754PUF606890.909ENSLACG00000005456PUF6010090.437Latimeria_chalumnae
ENSCAFG00020018754PUF6010089.869ENSLOCG00000010106puf60b10088.743Lepisosteus_oculatus
ENSCAFG00020018754PUF609898.276ENSLAFG00000022929PUF6010096.243Loxodonta_africana
ENSCAFG00020018754PUF6010099.623ENSMFAG00000043373PUF6010099.623Macaca_fascicularis
ENSCAFG00020018754PUF6010099.643ENSMMUG00000013558PUF6010099.643Macaca_mulatta
ENSCAFG00020018754PUF6010099.623ENSMNEG00000031099PUF6010099.623Macaca_nemestrina
ENSCAFG00020018754PUF609799.612ENSMLEG00000040009PUF6010099.612Mandrillus_leucophaeus
ENSCAFG00020018754PUF609885.199ENSMAMG00000010394puf60b10083.738Mastacembelus_armatus
ENSCAFG00020018754PUF609981.955ENSMAMG00000019476-9982.163Mastacembelus_armatus
ENSCAFG00020018754PUF609981.391ENSMZEG00005019425-9981.973Maylandia_zebra
ENSCAFG00020018754PUF609785.413ENSMZEG00005018515puf60b10085.413Maylandia_zebra
ENSCAFG00020018754PUF609998.095ENSMGAG00000013070PUF609998.095Meleagris_gallopavo
ENSCAFG00020018754PUF6010076.822ENSMAUG00000018549-10076.822Mesocricetus_auratus
ENSCAFG00020018754PUF607298.284ENSMAUG00000014267-10098.284Mesocricetus_auratus
ENSCAFG00020018754PUF60100100.000ENSMICG00000012226PUF60100100.000Microcebus_murinus
ENSCAFG00020018754PUF6010098.582ENSMOCG00000018780Puf6010098.582Microtus_ochrogaster
ENSCAFG00020018754PUF609785.797ENSMMOG00000004217puf60b10085.797Mola_mola
ENSCAFG00020018754PUF609872.849ENSMMOG00000018059-9976.712Mola_mola
ENSCAFG00020018754PUF6010097.790ENSMODG00000009161PUF6010097.790Monodelphis_domestica
ENSCAFG00020018754PUF609980.075ENSMALG00000000200-9979.245Monopterus_albus
ENSCAFG00020018754PUF609877.799ENSMALG00000006797puf60b9977.841Monopterus_albus
ENSCAFG00020018754PUF6010098.404MGP_CAROLIEiJ_G0019910Puf6010098.404Mus_caroli
ENSCAFG00020018754PUF6010098.404ENSMUSG00000002524Puf6010098.404Mus_musculus
ENSCAFG00020018754PUF6010098.404MGP_PahariEiJ_G0019920Puf6010098.404Mus_pahari
ENSCAFG00020018754PUF6010098.404MGP_SPRETEiJ_G0020812Puf6010098.404Mus_spretus
ENSCAFG00020018754PUF609999.094ENSMPUG00000008137PUF609799.094Mustela_putorius_furo
ENSCAFG00020018754PUF609998.551ENSMLUG00000000238-9898.551Myotis_lucifugus
ENSCAFG00020018754PUF6010091.887ENSMLUG00000013032-9895.446Myotis_lucifugus
ENSCAFG00020018754PUF6010098.759ENSNGAG00000000712Puf6010099.419Nannospalax_galili
ENSCAFG00020018754PUF608281.236ENSNBRG00000013047puf60b9784.235Neolamprologus_brichardi
ENSCAFG00020018754PUF609981.579ENSNBRG00000017223-9982.129Neolamprologus_brichardi
ENSCAFG00020018754PUF6010099.464ENSNLEG00000002156PUF6010099.464Nomascus_leucogenys
ENSCAFG00020018754PUF607399.659ENSOPRG00000002147PUF607599.659Ochotona_princeps
ENSCAFG00020018754PUF609574.162ENSODEG00000015513-9971.375Octodon_degus
ENSCAFG00020018754PUF6074100.000ENSODEG00000014024-100100.000Octodon_degus
ENSCAFG00020018754PUF609981.767ENSONIG00000014030-9982.197Oreochromis_niloticus
ENSCAFG00020018754PUF609884.630ENSONIG00000006247puf60b9984.659Oreochromis_niloticus
ENSCAFG00020018754PUF609678.599ENSOANG00000006962PUF609978.599Ornithorhynchus_anatinus
ENSCAFG00020018754PUF609778.788ENSORLG00000028655-9978.897Oryzias_latipes
ENSCAFG00020018754PUF609884.820ENSORLG00000012279puf60b10085.029Oryzias_latipes
ENSCAFG00020018754PUF609978.131ENSORLG00020018144-9978.236Oryzias_latipes_hni
ENSCAFG00020018754PUF609884.820ENSORLG00020007333puf6010085.029Oryzias_latipes_hni
ENSCAFG00020018754PUF609883.932ENSORLG00015007718puf60b10084.895Oryzias_latipes_hsok
ENSCAFG00020018754PUF609978.253ENSORLG00015016833-9978.358Oryzias_latipes_hsok
ENSCAFG00020018754PUF609979.135ENSOMEG00000022185-9979.135Oryzias_melastigma
ENSCAFG00020018754PUF609882.528ENSOMEG00000001643puf60b9983.232Oryzias_melastigma
ENSCAFG00020018754PUF609899.808ENSOGAG00000006259PUF609998.569Otolemur_garnettii
ENSCAFG00020018754PUF609897.126ENSOARG00000016235PUF609997.132Ovis_aries
ENSCAFG00020018754PUF6010099.623ENSPPAG00000029933PUF6010099.623Pan_paniscus
ENSCAFG00020018754PUF6010099.623ENSPPRG00000003257PUF6010099.623Panthera_pardus
ENSCAFG00020018754PUF609998.881ENSPTIG00000009795PUF609997.318Panthera_tigris_altaica
ENSCAFG00020018754PUF6010099.434ENSPTRG00000020670PUF6010099.434Pan_troglodytes
ENSCAFG00020018754PUF609999.275ENSPTRG00000043963-9999.275Pan_troglodytes
ENSCAFG00020018754PUF6010099.623ENSPANG00000021936PUF6010099.623Papio_anubis
ENSCAFG00020018754PUF6010086.704ENSPKIG00000012204puf60b10088.077Paramormyrops_kingsleyae
ENSCAFG00020018754PUF6010085.475ENSPKIG00000004295puf60a9992.647Paramormyrops_kingsleyae
ENSCAFG00020018754PUF609898.276ENSPSIG00000004679PUF609998.279Pelodiscus_sinensis
ENSCAFG00020018754PUF609784.351ENSPMGG00000013444puf60b9984.351Periophthalmus_magnuspinnatus
ENSCAFG00020018754PUF6010098.582ENSPEMG00000008820Puf6010098.582Peromyscus_maniculatus_bairdii
ENSCAFG00020018754PUF609999.426ENSPCIG00000020270PUF609999.616Phascolarctos_cinereus
ENSCAFG00020018754PUF609979.623ENSPFOG00000011118-9979.962Poecilia_formosa
ENSCAFG00020018754PUF6010083.551ENSPFOG00000019217puf60b10084.825Poecilia_formosa
ENSCAFG00020018754PUF609785.029ENSPLAG00000010754puf60b10086.180Poecilia_latipinna
ENSCAFG00020018754PUF609979.623ENSPLAG00000017025-9279.584Poecilia_latipinna
ENSCAFG00020018754PUF6010083.551ENSPMEG00000000838puf60b10086.180Poecilia_mexicana
ENSCAFG00020018754PUF609979.623ENSPMEG00000009767-9279.962Poecilia_mexicana
ENSCAFG00020018754PUF6010080.874ENSPREG00000005440puf60b10083.929Poecilia_reticulata
ENSCAFG00020018754PUF607997.842ENSPPYG00000018951-9597.842Pongo_abelii
ENSCAFG00020018754PUF607999.760ENSPCAG00000014837PUF6010099.760Procavia_capensis
ENSCAFG00020018754PUF6010099.811ENSPCOG00000027981PUF6010099.811Propithecus_coquereli
ENSCAFG00020018754PUF6097100.000ENSPVAG00000016167PUF6081100.000Pteropus_vampyrus
ENSCAFG00020018754PUF609981.391ENSPNYG00000004273-9981.973Pundamilia_nyererei
ENSCAFG00020018754PUF609785.413ENSPNYG00000002556puf60b10085.413Pundamilia_nyererei
ENSCAFG00020018754PUF609982.264ENSPNAG00000019909puf60a9984.961Pygocentrus_nattereri
ENSCAFG00020018754PUF609877.481ENSPNAG00000019415puf60b9176.699Pygocentrus_nattereri
ENSCAFG00020018754PUF6010098.355ENSRNOG00000009960Puf6010098.355Rattus_norvegicus
ENSCAFG00020018754PUF6010099.623ENSRBIG00000035274PUF6010099.623Rhinopithecus_bieti
ENSCAFG00020018754PUF6010099.623ENSRROG00000029360PUF6010099.623Rhinopithecus_roxellana
ENSCAFG00020018754PUF609997.921ENSSBOG00000027089PUF609997.921Saimiri_boliviensis_boliviensis
ENSCAFG00020018754PUF608999.149ENSSHAG00000006668PUF609697.047Sarcophilus_harrisii
ENSCAFG00020018754PUF609386.437ENSSFOG00015019619puf60b9986.437Scleropages_formosus
ENSCAFG00020018754PUF6010080.893ENSSFOG00015019371puf60a9887.324Scleropages_formosus
ENSCAFG00020018754PUF607391.638ENSSMAG00000016381puf60b7491.638Scophthalmus_maximus
ENSCAFG00020018754PUF609979.584ENSSDUG00000007048-9979.962Seriola_dumerili
ENSCAFG00020018754PUF609983.488ENSSDUG00000009935puf60b10083.488Seriola_dumerili
ENSCAFG00020018754PUF609780.418ENSSLDG00000007366-9980.835Seriola_lalandi_dorsalis
ENSCAFG00020018754PUF609885.551ENSSLDG00000024011puf60b10083.925Seriola_lalandi_dorsalis
ENSCAFG00020018754PUF606585.260ENSSPUG00000013518PUF609485.757Sphenodon_punctatus
ENSCAFG00020018754PUF609882.810ENSSPAG00000012144puf60b10084.112Stegastes_partitus
ENSCAFG00020018754PUF609782.061ENSSPAG00000020285-10082.634Stegastes_partitus
ENSCAFG00020018754PUF609998.387ENSSSCG00000038800PUF609899.208Sus_scrofa
ENSCAFG00020018754PUF609895.211ENSTGUG00000012797-10095.211Taeniopygia_guttata
ENSCAFG00020018754PUF609777.713ENSTRUG00000008843-10080.361Takifugu_rubripes
ENSCAFG00020018754PUF609884.250ENSTRUG00000005420puf60b10082.804Takifugu_rubripes
ENSCAFG00020018754PUF609877.969ENSTNIG00000003069-10078.011Tetraodon_nigroviridis
ENSCAFG00020018754PUF609884.250ENSTNIG00000013675puf60b10084.091Tetraodon_nigroviridis
ENSCAFG00020018754PUF606096.284ENSTBEG00000002751-9996.271Tupaia_belangeri
ENSCAFG00020018754PUF607981.503ENSTBEG00000001899-10081.792Tupaia_belangeri
ENSCAFG00020018754PUF609799.031ENSTTRG00000017088PUF6010099.031Tursiops_truncatus
ENSCAFG00020018754PUF60100100.000ENSUAMG00000024917PUF60100100.000Ursus_americanus
ENSCAFG00020018754PUF609994.928ENSUMAG00000000272PUF609994.384Ursus_maritimus
ENSCAFG00020018754PUF609999.638ENSVVUG00000022527PUF60100100.000Vulpes_vulpes
ENSCAFG00020018754PUF609993.561ENSXETG00000012469puf609994.831Xenopus_tropicalis
ENSCAFG00020018754PUF609781.766ENSXCOG00000012355puf60b10085.714Xiphophorus_couchianus
ENSCAFG00020018754PUF6010083.551ENSXMAG00000001862puf60b10086.180Xiphophorus_maculatus
ENSCAFG00020018754PUF609877.863ENSXMAG00000010507-9979.724Xiphophorus_maculatus

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