EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00020019182 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Canis_lupus_dingo
Status: putative
Strand: Minus strand
Length: 2180 bases
Position: chrQKWQ01000159.1:12070381-12072560
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00020024369	RRM_5	PF13893.6	6.3e-16	1	2
ENSCAFP00020024369	RRM_5	PF13893.6	6.3e-16	2	2
ENSCAFP00020024369	RRM_1	PF00076.22	8.9e-80	1	4
ENSCAFP00020024369	RRM_1	PF00076.22	8.9e-80	2	4
ENSCAFP00020024369	RRM_1	PF00076.22	8.9e-80	3	4
ENSCAFP00020024369	RRM_1	PF00076.22	8.9e-80	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00020028133	-	2061	-	ENSCAFP00020024369	686 (aa)	-	-

Gene Model

Click here to download ENSCAFG00020019182's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00020019182's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00020019182	-	53	33.766	ENSCAFG00020022841	-	94	33.766
ENSCAFG00020019182	-	73	54.724	ENSCAFG00020004161	PABPC4	68	57.778
ENSCAFG00020019182	-	52	32.911	ENSCAFG00020023584	TRNAU1AP	60	32.515
ENSCAFG00020019182	-	53	60.942	ENSCAFG00020013828	PABPC1L	62	60.942
ENSCAFG00020019182	-	55	34.848	ENSCAFG00020009731	CELF3	85	31.765
ENSCAFG00020019182	-	53	64.305	ENSCAFG00020000440	PABPC1	58	64.305
ENSCAFG00020019182	-	53	60.891	ENSCAFG00020002052	-	97	60.891

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00020019182	-	54	73.913	ENSG00000254535	PABPC4L	99	73.913	Homo_sapiens
ENSCAFG00020019182	-	54	73.913	ENSANAG00000017199	PABPC4L	89	73.913	Aotus_nancymaae
ENSCAFG00020019182	-	55	76.087	ENSBTAG00000046902	PABPC4L	99	76.087	Bos_taurus
ENSCAFG00020019182	-	54	73.370	ENSCJAG00000045332	PABPC4L	89	73.370	Callithrix_jacchus
ENSCAFG00020019182	-	55	75.815	ENSCHIG00000007231	PABPC4L	99	75.815	Capra_hircus
ENSCAFG00020019182	-	52	71.171	ENSCAPG00000000555	PABPC4L	100	71.171	Cavia_aperea
ENSCAFG00020019182	-	54	68.750	ENSCPOG00000033167	PABPC4L	100	68.750	Cavia_porcellus
ENSCAFG00020019182	-	54	73.370	ENSCCAG00000031681	PABPC4L	89	73.370	Cebus_capucinus
ENSCAFG00020019182	-	54	70.109	ENSCLAG00000017628	PABPC4L	99	70.109	Chinchilla_lanigera
ENSCAFG00020019182	-	54	72.283	ENSCANG00000037677	PABPC4L	99	72.283	Colobus_angolensis_palliatus
ENSCAFG00020019182	-	54	68.750	ENSCGRG00001002070	Pabpc4l	99	68.750	Cricetulus_griseus_chok1gshd
ENSCAFG00020019182	-	54	68.750	ENSCGRG00000020086	Pabpc4l	99	68.750	Cricetulus_griseus_crigri
ENSCAFG00020019182	-	54	73.098	ENSDNOG00000031077	PABPC4L	97	73.098	Dasypus_novemcinctus
ENSCAFG00020019182	-	55	75.272	ENSEASG00005007883	PABPC4L	99	75.272	Equus_asinus_asinus
ENSCAFG00020019182	-	55	75.543	ENSECAG00000031416	PABPC4L	99	75.543	Equus_caballus
ENSCAFG00020019182	-	55	76.902	ENSFCAG00000028270	PABPC4L	99	76.902	Felis_catus
ENSCAFG00020019182	-	54	73.913	ENSFDAG00000019606	PABPC4L	99	73.913	Fukomys_damarensis
ENSCAFG00020019182	-	54	73.913	ENSGGOG00000024991	PABPC4L	99	73.913	Gorilla_gorilla
ENSCAFG00020019182	-	54	74.457	ENSHGLG00000020104	PABPC4L	99	74.457	Heterocephalus_glaber_female
ENSCAFG00020019182	-	54	74.457	ENSHGLG00100020648	PABPC4L	99	74.457	Heterocephalus_glaber_male
ENSCAFG00020019182	-	55	71.816	ENSSTOG00000019472	PABPC4L	99	71.816	Ictidomys_tridecemlineatus
ENSCAFG00020019182	-	54	72.011	ENSJJAG00000004090	Pabpc4l	99	72.011	Jaculus_jaculus
ENSCAFG00020019182	-	54	69.022	ENSMAUG00000016313	Pabpc4l	99	69.022	Mesocricetus_auratus
ENSCAFG00020019182	-	54	72.826	ENSMICG00000029683	PABPC4L	99	72.826	Microcebus_murinus
ENSCAFG00020019182	-	54	70.380	ENSMOCG00000007551	Pabpc4l	99	70.380	Microtus_ochrogaster
ENSCAFG00020019182	-	55	71.512	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	74.000	Mus_caroli
ENSCAFG00020019182	-	55	70.349	ENSMUSG00000090919	Pabpc4l	100	74.000	Mus_musculus
ENSCAFG00020019182	-	55	69.767	MGP_PahariEiJ_G0026409	Pabpc4l	100	72.000	Mus_pahari
ENSCAFG00020019182	-	55	69.767	MGP_SPRETEiJ_G0025903	Pabpc4l	100	74.000	Mus_spretus
ENSCAFG00020019182	-	55	70.652	ENSMLUG00000008254	PABPC4L	99	70.652	Myotis_lucifugus
ENSCAFG00020019182	-	54	71.467	ENSNGAG00000001502	Pabpc4l	99	71.467	Nannospalax_galili
ENSCAFG00020019182	-	54	73.913	ENSNLEG00000019300	PABPC4L	99	73.913	Nomascus_leucogenys
ENSCAFG00020019182	-	54	67.391	ENSOGAG00000026166	PABPC4L	99	67.391	Otolemur_garnettii
ENSCAFG00020019182	-	54	73.684	ENSPPAG00000043745	PABPC4L	93	73.684	Pan_paniscus
ENSCAFG00020019182	-	55	76.359	ENSPPRG00000018628	PABPC4L	99	76.359	Panthera_pardus
ENSCAFG00020019182	-	55	76.902	ENSPTIG00000010106	PABPC4L	99	76.902	Panthera_tigris_altaica
ENSCAFG00020019182	-	54	73.684	ENSPTRG00000045513	-	79	73.684	Pan_troglodytes
ENSCAFG00020019182	-	54	70.652	ENSPEMG00000012565	Pabpc4l	99	70.652	Peromyscus_maniculatus_bairdii
ENSCAFG00020019182	-	54	72.011	ENSPCOG00000025578	PABPC4L	99	72.011	Propithecus_coquereli
ENSCAFG00020019182	-	54	67.663	ENSRNOG00000029749	Pabpc4l	99	67.663	Rattus_norvegicus
ENSCAFG00020019182	-	54	72.283	ENSRBIG00000030229	PABPC4L	99	72.283	Rhinopithecus_bieti
ENSCAFG00020019182	-	54	72.011	ENSRROG00000020367	PABPC4L	99	72.011	Rhinopithecus_roxellana
ENSCAFG00020019182	-	54	74.457	ENSSBOG00000016382	PABPC4L	99	74.457	Saimiri_boliviensis_boliviensis
ENSCAFG00020019182	-	55	68.207	ENSSSCG00000009067	PABPC4L	99	68.207	Sus_scrofa
ENSCAFG00020019182	-	55	75.815	ENSUAMG00000001289	PABPC4L	99	75.815	Ursus_americanus
ENSCAFG00020019182	-	55	75.815	ENSUMAG00000014887	PABPC4L	99	75.815	Ursus_maritimus
ENSCAFG00020019182	-	63	95.679	ENSVVUG00000011060	-	99	95.679	Vulpes_vulpes