EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00020019979 (Gene tree)
Gene ID: 112664446
Gene Symbol: SNRNP200
Alias: ASCC3L1|BRR2|HELIC2|KIAA0788|RP33|U5-200KD
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Canis_lupus_dingo
Status: putative
Strand: Minus strand
Length: 32510 bases
Position: chrQKWQ01001382.1:29736841-29769350
Accession: 112664446
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00020027168	ResIII	PF04851.15	6.1e-26	1	2
ENSCAFP00020027168	ResIII	PF04851.15	6.1e-26	2	2
ENSCAFP00020027153	ResIII	PF04851.15	7.5e-26	1	2
ENSCAFP00020027153	ResIII	PF04851.15	7.5e-26	2	2
ENSCAFP00020027148	ResIII	PF04851.15	7.7e-26	1	2
ENSCAFP00020027148	ResIII	PF04851.15	7.7e-26	2	2
ENSCAFP00020026565	ResIII	PF04851.15	8e-26	1	2
ENSCAFP00020026565	ResIII	PF04851.15	8e-26	2	2
ENSCAFP00020027155	ResIII	PF04851.15	9.8e-17	1	1
ENSCAFP00020027161	ResIII	PF04851.15	1.4e-10	1	1
ENSCAFP00020026565	DEAD	PF00270.29	2.2e-52	1	2
ENSCAFP00020026565	DEAD	PF00270.29	2.2e-52	2	2
ENSCAFP00020027168	DEAD	PF00270.29	2.7e-52	1	2
ENSCAFP00020027168	DEAD	PF00270.29	2.7e-52	2	2
ENSCAFP00020027153	DEAD	PF00270.29	4.2e-52	1	2
ENSCAFP00020027153	DEAD	PF00270.29	4.2e-52	2	2
ENSCAFP00020027148	DEAD	PF00270.29	4.6e-52	1	2
ENSCAFP00020027148	DEAD	PF00270.29	4.6e-52	2	2
ENSCAFP00020027155	DEAD	PF00270.29	2.7e-36	1	2
ENSCAFP00020027155	DEAD	PF00270.29	2.7e-36	2	2
ENSCAFP00020027161	DEAD	PF00270.29	1.2e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00020031362	SNRNP200-205	2073	-	ENSCAFP00020027161	690 (aa)	-	UPI00004BC8A0
ENSCAFT00020031370	SNRNP200-206	5640	-	ENSCAFP00020027168	1879 (aa)	-	-
ENSCAFT00020031390	SNRNP200-207	1782	-	ENSCAFP00020027185	593 (aa)	-	-
ENSCAFT00020031349	SNRNP200-202	6432	XM_025454033	ENSCAFP00020027148	2143 (aa)	XP_025309818	-
ENSCAFT00020030690	SNRNP200-201	5907	-	ENSCAFP00020026565	1714 (aa)	-	-
ENSCAFT00020031356	SNRNP200-204	6216	-	ENSCAFP00020027155	2071 (aa)	-	-
ENSCAFT00020031354	SNRNP200-203	6387	-	ENSCAFP00020027153	2128 (aa)	-	-

Gene Model

Click here to download ENSCAFG00020019979's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00020019979's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00020019979	SNRNP200	99	47.815	ENSCAFG00020016899	ASCC3	80	44.382

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00020019979	SNRNP200	100	99.883	ENSG00000144028	SNRNP200	100	99.067	Homo_sapiens
ENSCAFG00020019979	SNRNP200	99	91.974	ENSAPOG00000010223	snrnp200	99	90.061	Acanthochromis_polyacanthus
ENSCAFG00020019979	SNRNP200	100	99.942	ENSAMEG00000008996	SNRNP200	100	99.113	Ailuropoda_melanoleuca
ENSCAFG00020019979	SNRNP200	99	91.778	ENSACIG00000001764	snrnp200	98	89.387	Amphilophus_citrinellus
ENSCAFG00020019979	SNRNP200	99	91.857	ENSAOCG00000024593	snrnp200	100	89.173	Amphiprion_ocellaris
ENSCAFG00020019979	SNRNP200	99	91.912	ENSAPEG00000012554	snrnp200	100	89.227	Amphiprion_percula
ENSCAFG00020019979	SNRNP200	99	91.623	ENSATEG00000022522	snrnp200	99	89.827	Anabas_testudineus
ENSCAFG00020019979	SNRNP200	100	97.433	ENSAPLG00000004313	SNRNP200	100	96.945	Anas_platyrhynchos
ENSCAFG00020019979	SNRNP200	98	98.176	ENSACAG00000000434	SNRNP200	100	96.522	Anolis_carolinensis
ENSCAFG00020019979	SNRNP200	100	99.535	ENSANAG00000036625	SNRNP200	100	94.933	Aotus_nancymaae
ENSCAFG00020019979	SNRNP200	99	91.623	ENSACLG00000011188	snrnp200	99	89.687	Astatotilapia_calliptera
ENSCAFG00020019979	SNRNP200	99	91.564	ENSAMXG00000005684	snrnp200	99	89.781	Astyanax_mexicanus
ENSCAFG00020019979	SNRNP200	100	99.242	ENSBTAG00000000848	SNRNP200	100	98.553	Bos_taurus
ENSCAFG00020019979	SNRNP200	100	100.000	ENSCJAG00000007514	SNRNP200	100	100.000	Callithrix_jacchus
ENSCAFG00020019979	SNRNP200	100	99.475	ENSCHIG00000020611	SNRNP200	100	98.740	Capra_hircus
ENSCAFG00020019979	SNRNP200	100	100.000	ENSTSYG00000010467	SNRNP200	100	100.000	Carlito_syrichta
ENSCAFG00020019979	SNRNP200	100	99.418	ENSCAPG00000017234	SNRNP200	99	98.594	Cavia_aperea
ENSCAFG00020019979	SNRNP200	100	99.708	ENSCPOG00000006776	SNRNP200	100	98.880	Cavia_porcellus
ENSCAFG00020019979	SNRNP200	100	100.000	ENSCCAG00000033962	SNRNP200	100	100.000	Cebus_capucinus
ENSCAFG00020019979	SNRNP200	100	100.000	ENSCATG00000015790	SNRNP200	100	100.000	Cercocebus_atys
ENSCAFG00020019979	SNRNP200	100	99.533	ENSCLAG00000004116	SNRNP200	100	98.740	Chinchilla_lanigera
ENSCAFG00020019979	SNRNP200	100	99.825	ENSCSAG00000017369	SNRNP200	100	99.020	Chlorocebus_sabaeus
ENSCAFG00020019979	SNRNP200	76	99.213	ENSCHOG00000012981	-	59	99.213	Choloepus_hoffmanni
ENSCAFG00020019979	SNRNP200	100	97.841	ENSCPBG00000022571	SNRNP200	100	97.018	Chrysemys_picta_bellii
ENSCAFG00020019979	SNRNP200	99	79.043	ENSCING00000005082	-	99	76.093	Ciona_intestinalis
ENSCAFG00020019979	SNRNP200	100	99.825	ENSCANG00000033932	SNRNP200	100	98.958	Colobus_angolensis_palliatus
ENSCAFG00020019979	SNRNP200	100	99.767	ENSCGRG00001022610	Snrnp200	100	98.927	Cricetulus_griseus_chok1gshd
ENSCAFG00020019979	SNRNP200	100	99.068	ENSCGRG00000016472	Snrnp200	100	98.369	Cricetulus_griseus_crigri
ENSCAFG00020019979	SNRNP200	100	90.782	ENSCSEG00000016399	snrnp200	100	89.174	Cynoglossus_semilaevis
ENSCAFG00020019979	SNRNP200	100	86.804	ENSCVAG00000017631	snrnp200	99	86.804	Cyprinodon_variegatus
ENSCAFG00020019979	SNRNP200	100	91.540	ENSDARG00000077536	snrnp200	99	89.641	Danio_rerio
ENSCAFG00020019979	SNRNP200	100	98.784	ENSDNOG00000011227	SNRNP200	100	97.527	Dasypus_novemcinctus
ENSCAFG00020019979	SNRNP200	100	99.592	ENSDORG00000005861	Snrnp200	100	96.319	Dipodomys_ordii
ENSCAFG00020019979	SNRNP200	100	77.778	FBgn0263599	l(3)72Ab	99	73.596	Drosophila_melanogaster
ENSCAFG00020019979	SNRNP200	100	98.936	ENSETEG00000000162	SNRNP200	74	98.880	Echinops_telfairi
ENSCAFG00020019979	SNRNP200	99	82.726	ENSEBUG00000016524	snrnp200	95	80.538	Eptatretus_burgeri
ENSCAFG00020019979	SNRNP200	100	99.129	ENSEASG00005001884	SNRNP200	100	98.002	Equus_asinus_asinus
ENSCAFG00020019979	SNRNP200	100	100.000	ENSECAG00000019675	SNRNP200	100	99.113	Equus_caballus
ENSCAFG00020019979	SNRNP200	95	98.166	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSCAFG00020019979	SNRNP200	99	92.209	ENSELUG00000018948	snrnp200	99	90.014	Esox_lucius
ENSCAFG00020019979	SNRNP200	100	100.000	ENSFCAG00000010699	SNRNP200	100	99.160	Felis_catus
ENSCAFG00020019979	SNRNP200	98	93.535	ENSFALG00000001368	-	95	92.857	Ficedula_albicollis
ENSCAFG00020019979	SNRNP200	100	99.533	ENSFDAG00000004683	SNRNP200	100	98.787	Fukomys_damarensis
ENSCAFG00020019979	SNRNP200	100	89.012	ENSFHEG00000003786	snrnp200	99	89.012	Fundulus_heteroclitus
ENSCAFG00020019979	SNRNP200	100	90.507	ENSGMOG00000004881	snrnp200	99	88.920	Gadus_morhua
ENSCAFG00020019979	SNRNP200	100	89.251	ENSGAFG00000010807	snrnp200	99	89.251	Gambusia_affinis
ENSCAFG00020019979	SNRNP200	100	91.322	ENSGACG00000011474	snrnp200	99	89.204	Gasterosteus_aculeatus
ENSCAFG00020019979	SNRNP200	100	97.841	ENSGAGG00000016069	SNRNP200	99	96.875	Gopherus_agassizii
ENSCAFG00020019979	SNRNP200	100	100.000	ENSGGOG00000005174	SNRNP200	100	100.000	Gorilla_gorilla
ENSCAFG00020019979	SNRNP200	99	88.615	ENSHBUG00000011322	snrnp200	99	86.968	Haplochromis_burtoni
ENSCAFG00020019979	SNRNP200	100	99.650	ENSHGLG00000006654	SNRNP200	100	98.880	Heterocephalus_glaber_female
ENSCAFG00020019979	SNRNP200	100	99.650	ENSHGLG00100018594	SNRNP200	100	98.880	Heterocephalus_glaber_male
ENSCAFG00020019979	SNRNP200	50	81.844	ENSIPUG00000007770	-	89	81.818	Ictalurus_punctatus
ENSCAFG00020019979	SNRNP200	100	99.825	ENSSTOG00000016351	SNRNP200	100	99.020	Ictidomys_tridecemlineatus
ENSCAFG00020019979	SNRNP200	100	99.650	ENSJJAG00000023659	Snrnp200	100	98.833	Jaculus_jaculus
ENSCAFG00020019979	SNRNP200	100	88.761	ENSKMAG00000003665	snrnp200	99	88.761	Kryptolebias_marmoratus
ENSCAFG00020019979	SNRNP200	100	91.249	ENSLBEG00000021585	snrnp200	99	89.547	Labrus_bergylta
ENSCAFG00020019979	SNRNP200	100	94.924	ENSLACG00000000226	SNRNP200	99	94.164	Latimeria_chalumnae
ENSCAFG00020019979	SNRNP200	100	92.882	ENSLOCG00000015198	snrnp200	99	91.461	Lepisosteus_oculatus
ENSCAFG00020019979	SNRNP200	100	99.650	ENSLAFG00000015626	SNRNP200	100	98.740	Loxodonta_africana
ENSCAFG00020019979	SNRNP200	100	100.000	ENSMFAG00000040174	SNRNP200	100	100.000	Macaca_fascicularis
ENSCAFG00020019979	SNRNP200	100	100.000	ENSMMUG00000023261	SNRNP200	100	100.000	Macaca_mulatta
ENSCAFG00020019979	SNRNP200	100	99.855	ENSMNEG00000032398	SNRNP200	100	99.855	Macaca_nemestrina
ENSCAFG00020019979	SNRNP200	100	100.000	ENSMLEG00000019083	SNRNP200	100	100.000	Mandrillus_leucophaeus
ENSCAFG00020019979	SNRNP200	100	91.599	ENSMAMG00000007851	snrnp200	99	89.459	Mastacembelus_armatus
ENSCAFG00020019979	SNRNP200	99	88.615	ENSMZEG00005010787	snrnp200	99	86.968	Maylandia_zebra
ENSCAFG00020019979	SNRNP200	100	97.025	ENSMGAG00000001831	SNRNP200	100	96.480	Meleagris_gallopavo
ENSCAFG00020019979	SNRNP200	100	99.825	ENSMAUG00000011825	Snrnp200	100	98.973	Mesocricetus_auratus
ENSCAFG00020019979	SNRNP200	100	99.942	ENSMICG00000004710	SNRNP200	100	99.710	Microcebus_murinus
ENSCAFG00020019979	SNRNP200	100	99.825	ENSMOCG00000011814	Snrnp200	100	96.407	Microtus_ochrogaster
ENSCAFG00020019979	SNRNP200	99	89.631	ENSMMOG00000014167	snrnp200	99	88.194	Mola_mola
ENSCAFG00020019979	SNRNP200	100	98.950	ENSMODG00000008475	SNRNP200	100	98.227	Monodelphis_domestica
ENSCAFG00020019979	SNRNP200	99	91.798	ENSMALG00000001973	snrnp200	99	89.967	Monopterus_albus
ENSCAFG00020019979	SNRNP200	100	99.767	MGP_CAROLIEiJ_G0024250	Snrnp200	100	98.787	Mus_caroli
ENSCAFG00020019979	SNRNP200	100	99.825	ENSMUSG00000003660	Snrnp200	100	98.833	Mus_musculus
ENSCAFG00020019979	SNRNP200	100	99.825	MGP_PahariEiJ_G0025695	Snrnp200	100	98.880	Mus_pahari
ENSCAFG00020019979	SNRNP200	100	99.825	MGP_SPRETEiJ_G0025170	Snrnp200	100	99.448	Mus_spretus
ENSCAFG00020019979	SNRNP200	100	99.883	ENSMPUG00000008949	SNRNP200	100	99.067	Mustela_putorius_furo
ENSCAFG00020019979	SNRNP200	100	99.184	ENSMLUG00000010493	SNRNP200	100	98.416	Myotis_lucifugus
ENSCAFG00020019979	SNRNP200	100	95.916	ENSMLUG00000027511	-	100	94.727	Myotis_lucifugus
ENSCAFG00020019979	SNRNP200	100	99.883	ENSNGAG00000021993	Snrnp200	100	99.067	Nannospalax_galili
ENSCAFG00020019979	SNRNP200	99	91.778	ENSNBRG00000017960	snrnp200	98	89.376	Neolamprologus_brichardi
ENSCAFG00020019979	SNRNP200	100	98.632	ENSNLEG00000000025	SNRNP200	100	96.377	Nomascus_leucogenys
ENSCAFG00020019979	SNRNP200	100	100.000	ENSMEUG00000010532	SNRNP200	79	100.000	Notamacropus_eugenii
ENSCAFG00020019979	SNRNP200	100	98.191	ENSOPRG00000015464	SNRNP200	100	95.147	Ochotona_princeps
ENSCAFG00020019979	SNRNP200	100	99.533	ENSODEG00000008366	SNRNP200	100	98.740	Octodon_degus
ENSCAFG00020019979	SNRNP200	99	91.681	ENSONIG00000010714	snrnp200	99	89.687	Oreochromis_niloticus
ENSCAFG00020019979	SNRNP200	100	99.825	ENSOCUG00000009864	SNRNP200	100	98.927	Oryctolagus_cuniculus
ENSCAFG00020019979	SNRNP200	100	91.424	ENSORLG00000012286	snrnp200	100	89.501	Oryzias_latipes
ENSCAFG00020019979	SNRNP200	100	91.482	ENSORLG00020004648	snrnp200	100	89.547	Oryzias_latipes_hni
ENSCAFG00020019979	SNRNP200	100	91.482	ENSORLG00015019114	snrnp200	100	89.501	Oryzias_latipes_hsok
ENSCAFG00020019979	SNRNP200	99	91.740	ENSOMEG00000011834	snrnp200	99	89.641	Oryzias_melastigma
ENSCAFG00020019979	SNRNP200	100	99.883	ENSOGAG00000006879	SNRNP200	100	99.067	Otolemur_garnettii
ENSCAFG00020019979	SNRNP200	100	99.088	ENSOARG00000013949	SNRNP200	100	97.715	Ovis_aries
ENSCAFG00020019979	SNRNP200	100	100.000	ENSPPAG00000041559	SNRNP200	100	100.000	Pan_paniscus
ENSCAFG00020019979	SNRNP200	100	100.000	ENSPPRG00000004435	SNRNP200	100	99.160	Panthera_pardus
ENSCAFG00020019979	SNRNP200	100	99.417	ENSPTIG00000006380	SNRNP200	100	98.693	Panthera_tigris_altaica
ENSCAFG00020019979	SNRNP200	100	100.000	ENSPTRG00000012230	SNRNP200	100	100.000	Pan_troglodytes
ENSCAFG00020019979	SNRNP200	100	100.000	ENSPANG00000006017	SNRNP200	100	100.000	Papio_anubis
ENSCAFG00020019979	SNRNP200	100	92.065	ENSPKIG00000014762	snrnp200	99	90.387	Paramormyrops_kingsleyae
ENSCAFG00020019979	SNRNP200	100	97.269	ENSPSIG00000008580	SNRNP200	100	95.989	Pelodiscus_sinensis
ENSCAFG00020019979	SNRNP200	100	99.130	ENSPEMG00000020700	-	100	99.541	Peromyscus_maniculatus_bairdii
ENSCAFG00020019979	SNRNP200	100	98.950	ENSPCIG00000023050	SNRNP200	100	98.227	Phascolarctos_cinereus
ENSCAFG00020019979	SNRNP200	100	91.545	ENSPFOG00000015110	snrnp200	99	89.646	Poecilia_formosa
ENSCAFG00020019979	SNRNP200	99	91.649	ENSPLAG00000006711	snrnp200	99	89.327	Poecilia_latipinna
ENSCAFG00020019979	SNRNP200	99	91.580	ENSPMEG00000021166	snrnp200	99	89.272	Poecilia_mexicana
ENSCAFG00020019979	SNRNP200	100	91.657	ENSPREG00000008875	snrnp200	99	89.734	Poecilia_reticulata
ENSCAFG00020019979	SNRNP200	100	99.883	ENSPPYG00000012068	SNRNP200	100	99.067	Pongo_abelii
ENSCAFG00020019979	SNRNP200	97	98.718	ENSPCAG00000008536	SNRNP200	89	98.718	Procavia_capensis
ENSCAFG00020019979	SNRNP200	100	99.942	ENSPCOG00000024608	SNRNP200	100	99.855	Propithecus_coquereli
ENSCAFG00020019979	SNRNP200	100	98.362	ENSPVAG00000005860	SNRNP200	93	100.000	Pteropus_vampyrus
ENSCAFG00020019979	SNRNP200	99	87.182	ENSPNYG00000017476	snrnp200	99	87.081	Pundamilia_nyererei
ENSCAFG00020019979	SNRNP200	100	87.290	ENSPNAG00000010998	snrnp200	99	87.290	Pygocentrus_nattereri
ENSCAFG00020019979	SNRNP200	100	99.825	ENSRNOG00000012157	Snrnp200	100	98.973	Rattus_norvegicus
ENSCAFG00020019979	SNRNP200	100	100.000	ENSRBIG00000044690	-	100	100.000	Rhinopithecus_bieti
ENSCAFG00020019979	SNRNP200	100	100.000	ENSRROG00000037952	-	100	100.000	Rhinopithecus_roxellana
ENSCAFG00020019979	SNRNP200	100	100.000	ENSSBOG00000035471	SNRNP200	100	100.000	Saimiri_boliviensis_boliviensis
ENSCAFG00020019979	SNRNP200	100	98.950	ENSSHAG00000000758	SNRNP200	100	98.120	Sarcophilus_harrisii
ENSCAFG00020019979	SNRNP200	99	92.384	ENSSFOG00015018826	snrnp200	99	90.714	Scleropages_formosus
ENSCAFG00020019979	SNRNP200	99	91.578	ENSSMAG00000005463	snrnp200	99	89.641	Scophthalmus_maximus
ENSCAFG00020019979	SNRNP200	99	91.798	ENSSDUG00000021410	snrnp200	99	89.921	Seriola_dumerili
ENSCAFG00020019979	SNRNP200	99	91.623	ENSSLDG00000010884	snrnp200	99	89.874	Seriola_lalandi_dorsalis
ENSCAFG00020019979	SNRNP200	95	99.196	ENSSARG00000010728	SNRNP200	96	99.196	Sorex_araneus
ENSCAFG00020019979	SNRNP200	100	97.666	ENSSPUG00000003726	-	100	96.780	Sphenodon_punctatus
ENSCAFG00020019979	SNRNP200	99	91.857	ENSSPAG00000001842	snrnp200	99	89.967	Stegastes_partitus
ENSCAFG00020019979	SNRNP200	100	99.767	ENSSSCG00000008127	SNRNP200	100	98.973	Sus_scrofa
ENSCAFG00020019979	SNRNP200	99	87.234	ENSTGUG00000014475	-	100	87.049	Taeniopygia_guttata
ENSCAFG00020019979	SNRNP200	99	91.623	ENSTRUG00000001307	snrnp200	99	89.594	Takifugu_rubripes
ENSCAFG00020019979	SNRNP200	100	90.628	ENSTNIG00000004320	snrnp200	100	85.322	Tetraodon_nigroviridis
ENSCAFG00020019979	SNRNP200	85	100.000	ENSTBEG00000003329	-	67	100.000	Tupaia_belangeri
ENSCAFG00020019979	SNRNP200	100	99.825	ENSTTRG00000004983	SNRNP200	100	98.787	Tursiops_truncatus
ENSCAFG00020019979	SNRNP200	95	90.729	ENSUAMG00000008395	-	95	93.144	Ursus_americanus
ENSCAFG00020019979	SNRNP200	100	100.000	ENSUMAG00000012385	SNRNP200	100	99.160	Ursus_maritimus
ENSCAFG00020019979	SNRNP200	90	100.000	ENSVPAG00000006434	SNRNP200	69	100.000	Vicugna_pacos
ENSCAFG00020019979	SNRNP200	100	100.000	ENSVVUG00000026247	SNRNP200	100	100.000	Vulpes_vulpes
ENSCAFG00020019979	SNRNP200	100	95.457	ENSXETG00000001243	snrnp200	100	93.616	Xenopus_tropicalis
ENSCAFG00020019979	SNRNP200	99	91.917	ENSXMAG00000002058	snrnp200	99	89.096	Xiphophorus_maculatus