EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAFG00020026421 (Gene tree)
Gene ID: 112656217
Gene Symbol: A1CF
Alias: ACF|ACF64|ACF65|APOBEC1CF|ASP
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Canis_lupus_dingo
Status: putative
Strand: Minus strand
Length: 49050 bases
Position: chrQKWQ01001884.1:1860660-1909709
Accession: 112656217
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAFP00020034027	DND1_DSRM	PF14709.7	1.5e-24	1	1
ENSCAFP00020034026	DND1_DSRM	PF14709.7	1.5e-24	1	1
ENSCAFP00020034026	RRM_1	PF00076.22	3.1e-40	1	3
ENSCAFP00020034026	RRM_1	PF00076.22	3.1e-40	2	3
ENSCAFP00020034026	RRM_1	PF00076.22	3.1e-40	3	3
ENSCAFP00020034027	RRM_1	PF00076.22	3.2e-40	1	3
ENSCAFP00020034027	RRM_1	PF00076.22	3.2e-40	2	3
ENSCAFP00020034027	RRM_1	PF00076.22	3.2e-40	3	3
ENSCAFP00020034029	RRM_1	PF00076.22	8.6e-33	1	3
ENSCAFP00020034029	RRM_1	PF00076.22	8.6e-33	2	3
ENSCAFP00020034029	RRM_1	PF00076.22	8.6e-33	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAFT00020039279	A1CF-202	1743	-	ENSCAFP00020034027	580 (aa)	-	-
ENSCAFT00020039278	A1CF-201	1773	-	ENSCAFP00020034026	590 (aa)	XP_025297224	UPI00004BE787
ENSCAFT00020039281	A1CF-203	909	-	ENSCAFP00020034029	302 (aa)	-	-

Gene Model

Click here to download ENSCAFG00020026421's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAFG00020026421's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAFG00020026421	A1CF	78	71.333	ENSCAFG00020002468	RBM46	81	71.333
ENSCAFG00020026421	A1CF	79	50.209	ENSCAFG00020015848	SYNCRIP	57	51.077
ENSCAFG00020026421	A1CF	75	74.561	ENSCAFG00020010558	RBM47	73	66.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAFG00020026421	A1CF	100	95.455	ENSG00000148584	A1CF	100	97.015	Homo_sapiens
ENSCAFG00020026421	A1CF	99	82.566	ENSAPOG00000008259	a1cf	100	72.955	Acanthochromis_polyacanthus
ENSCAFG00020026421	A1CF	100	97.804	ENSAMEG00000000523	A1CF	100	97.804	Ailuropoda_melanoleuca
ENSCAFG00020026421	A1CF	98	83.000	ENSACIG00000008632	a1cf	100	76.509	Amphilophus_citrinellus
ENSCAFG00020026421	A1CF	98	83.333	ENSAOCG00000023744	a1cf	96	83.188	Amphiprion_ocellaris
ENSCAFG00020026421	A1CF	98	83.278	ENSAPEG00000009537	a1cf	100	75.124	Amphiprion_percula
ENSCAFG00020026421	A1CF	98	82.667	ENSATEG00000013720	a1cf	100	76.721	Anabas_testudineus
ENSCAFG00020026421	A1CF	98	91.216	ENSAPLG00000002964	A1CF	100	88.682	Anas_platyrhynchos
ENSCAFG00020026421	A1CF	98	86.869	ENSACAG00000015269	A1CF	100	82.939	Anolis_carolinensis
ENSCAFG00020026421	A1CF	100	94.444	ENSANAG00000019974	A1CF	100	93.603	Aotus_nancymaae
ENSCAFG00020026421	A1CF	98	82.333	ENSACLG00000017428	a1cf	100	75.822	Astatotilapia_calliptera
ENSCAFG00020026421	A1CF	98	83.221	ENSAMXG00000018180	a1cf	100	74.050	Astyanax_mexicanus
ENSCAFG00020026421	A1CF	98	96.633	ENSBTAG00000021195	A1CF	100	95.055	Bos_taurus
ENSCAFG00020026421	A1CF	100	96.128	ENSCJAG00000005045	A1CF	100	96.128	Callithrix_jacchus
ENSCAFG00020026421	A1CF	100	100.000	ENSCAFG00000015581	A1CF	100	100.000	Canis_familiaris
ENSCAFG00020026421	A1CF	98	96.959	ENSCHIG00000020411	A1CF	100	94.454	Capra_hircus
ENSCAFG00020026421	A1CF	98	95.623	ENSTSYG00000001755	A1CF	100	93.560	Carlito_syrichta
ENSCAFG00020026421	A1CF	100	81.288	ENSCAPG00000017386	A1CF	90	93.061	Cavia_aperea
ENSCAFG00020026421	A1CF	100	94.276	ENSCPOG00000009807	A1CF	100	93.603	Cavia_porcellus
ENSCAFG00020026421	A1CF	100	96.121	ENSCCAG00000018168	A1CF	100	96.121	Cebus_capucinus
ENSCAFG00020026421	A1CF	100	94.426	ENSCATG00000043715	A1CF	100	93.919	Cercocebus_atys
ENSCAFG00020026421	A1CF	100	94.295	ENSCLAG00000010424	A1CF	100	93.792	Chinchilla_lanigera
ENSCAFG00020026421	A1CF	100	95.608	ENSCSAG00000007032	A1CF	100	95.101	Chlorocebus_sabaeus
ENSCAFG00020026421	A1CF	98	96.970	ENSCHOG00000009089	A1CF	98	89.153	Choloepus_hoffmanni
ENSCAFG00020026421	A1CF	100	88.682	ENSCPBG00000026464	A1CF	100	88.176	Chrysemys_picta_bellii
ENSCAFG00020026421	A1CF	100	96.115	ENSCANG00000038032	A1CF	100	96.115	Colobus_angolensis_palliatus
ENSCAFG00020026421	A1CF	100	92.773	ENSCGRG00001017413	A1cf	100	92.269	Cricetulus_griseus_chok1gshd
ENSCAFG00020026421	A1CF	100	92.101	ENSCGRG00000017332	A1cf	100	92.437	Cricetulus_griseus_crigri
ENSCAFG00020026421	A1CF	98	80.936	ENSCSEG00000002361	a1cf	100	74.917	Cynoglossus_semilaevis
ENSCAFG00020026421	A1CF	98	82.333	ENSCVAG00000010520	a1cf	100	76.230	Cyprinodon_variegatus
ENSCAFG00020026421	A1CF	98	79.933	ENSDARG00000002968	a1cf	100	78.595	Danio_rerio
ENSCAFG00020026421	A1CF	100	94.949	ENSDNOG00000002829	A1CF	100	94.276	Dasypus_novemcinctus
ENSCAFG00020026421	A1CF	80	95.094	ENSETEG00000012527	A1CF	79	95.094	Echinops_telfairi
ENSCAFG00020026421	A1CF	100	96.482	ENSEASG00005012924	A1CF	100	96.482	Equus_asinus_asinus
ENSCAFG00020026421	A1CF	100	96.147	ENSECAG00000010424	A1CF	100	96.147	Equus_caballus
ENSCAFG00020026421	A1CF	98	85.185	ENSEEUG00000000013	A1CF	96	81.250	Erinaceus_europaeus
ENSCAFG00020026421	A1CF	98	81.544	ENSELUG00000003159	a1cf	100	79.229	Esox_lucius
ENSCAFG00020026421	A1CF	98	97.980	ENSFCAG00000011179	A1CF	100	95.439	Felis_catus
ENSCAFG00020026421	A1CF	98	89.226	ENSFALG00000013183	A1CF	100	86.486	Ficedula_albicollis
ENSCAFG00020026421	A1CF	98	94.613	ENSFDAG00000019371	A1CF	100	91.429	Fukomys_damarensis
ENSCAFG00020026421	A1CF	98	82.667	ENSFHEG00000019652	a1cf	96	82.031	Fundulus_heteroclitus
ENSCAFG00020026421	A1CF	98	80.872	ENSGMOG00000018943	a1cf	100	71.642	Gadus_morhua
ENSCAFG00020026421	A1CF	98	90.878	ENSGALG00000003765	A1CF	97	88.592	Gallus_gallus
ENSCAFG00020026421	A1CF	98	82.000	ENSGAFG00000014868	a1cf	100	70.066	Gambusia_affinis
ENSCAFG00020026421	A1CF	98	82.274	ENSGACG00000010241	a1cf	100	73.684	Gasterosteus_aculeatus
ENSCAFG00020026421	A1CF	98	90.541	ENSGAGG00000016508	A1CF	98	87.633	Gopherus_agassizii
ENSCAFG00020026421	A1CF	100	95.623	ENSGGOG00000009670	A1CF	100	94.781	Gorilla_gorilla
ENSCAFG00020026421	A1CF	98	82.333	ENSHBUG00000021959	a1cf	100	76.020	Haplochromis_burtoni
ENSCAFG00020026421	A1CF	100	94.118	ENSHGLG00000008955	A1CF	100	93.613	Heterocephalus_glaber_female
ENSCAFG00020026421	A1CF	100	93.445	ENSHGLG00100000518	A1CF	100	92.941	Heterocephalus_glaber_male
ENSCAFG00020026421	A1CF	98	75.896	ENSHCOG00000017669	a1cf	100	71.895	Hippocampus_comes
ENSCAFG00020026421	A1CF	98	83.221	ENSIPUG00000010367	a1cf	99	81.013	Ictalurus_punctatus
ENSCAFG00020026421	A1CF	98	84.950	ENSKMAG00000006568	a1cf	100	76.585	Kryptolebias_marmoratus
ENSCAFG00020026421	A1CF	98	79.868	ENSLBEG00000020994	a1cf	98	76.277	Labrus_bergylta
ENSCAFG00020026421	A1CF	98	84.848	ENSLACG00000008061	A1CF	100	80.504	Latimeria_chalumnae
ENSCAFG00020026421	A1CF	98	86.195	ENSLOCG00000006302	a1cf	100	82.047	Lepisosteus_oculatus
ENSCAFG00020026421	A1CF	100	93.782	ENSLAFG00000015462	A1CF	100	93.109	Loxodonta_africana
ENSCAFG00020026421	A1CF	100	94.595	ENSMFAG00000035948	A1CF	100	94.088	Macaca_fascicularis
ENSCAFG00020026421	A1CF	100	94.595	ENSMMUG00000007077	A1CF	100	94.088	Macaca_mulatta
ENSCAFG00020026421	A1CF	100	94.257	ENSMNEG00000031454	A1CF	100	93.750	Macaca_nemestrina
ENSCAFG00020026421	A1CF	100	96.115	ENSMLEG00000037223	A1CF	100	96.115	Mandrillus_leucophaeus
ENSCAFG00020026421	A1CF	98	79.000	ENSMAMG00000010402	a1cf	100	74.426	Mastacembelus_armatus
ENSCAFG00020026421	A1CF	98	82.274	ENSMZEG00005013245	a1cf	100	77.349	Maylandia_zebra
ENSCAFG00020026421	A1CF	100	89.039	ENSMGAG00000001507	A1CF	100	88.702	Meleagris_gallopavo
ENSCAFG00020026421	A1CF	100	91.933	ENSMAUG00000007422	A1cf	100	91.765	Mesocricetus_auratus
ENSCAFG00020026421	A1CF	98	95.960	ENSMICG00000003377	A1CF	100	92.809	Microcebus_murinus
ENSCAFG00020026421	A1CF	100	92.605	ENSMOCG00000021536	A1cf	100	91.933	Microtus_ochrogaster
ENSCAFG00020026421	A1CF	98	82.333	ENSMMOG00000009422	a1cf	100	69.357	Mola_mola
ENSCAFG00020026421	A1CF	98	90.572	ENSMODG00000016478	A1CF	96	90.133	Monodelphis_domestica
ENSCAFG00020026421	A1CF	98	84.333	ENSMALG00000012992	a1cf	100	72.651	Monopterus_albus
ENSCAFG00020026421	A1CF	100	92.101	MGP_CAROLIEiJ_G0022873	A1cf	100	91.092	Mus_caroli
ENSCAFG00020026421	A1CF	100	92.101	ENSMUSG00000052595	A1cf	99	94.474	Mus_musculus
ENSCAFG00020026421	A1CF	100	91.261	MGP_PahariEiJ_G0014366	A1cf	100	90.420	Mus_pahari
ENSCAFG00020026421	A1CF	100	91.597	MGP_SPRETEiJ_G0023792	A1cf	100	90.588	Mus_spretus
ENSCAFG00020026421	A1CF	100	89.865	ENSMPUG00000016971	A1CF	100	90.541	Mustela_putorius_furo
ENSCAFG00020026421	A1CF	100	94.118	ENSMLUG00000016071	A1CF	100	94.454	Myotis_lucifugus
ENSCAFG00020026421	A1CF	100	93.445	ENSNGAG00000015136	A1cf	100	92.941	Nannospalax_galili
ENSCAFG00020026421	A1CF	98	82.667	ENSNBRG00000001712	a1cf	100	76.020	Neolamprologus_brichardi
ENSCAFG00020026421	A1CF	100	96.303	ENSNLEG00000012028	A1CF	100	96.303	Nomascus_leucogenys
ENSCAFG00020026421	A1CF	98	91.919	ENSMEUG00000015909	A1CF	100	88.372	Notamacropus_eugenii
ENSCAFG00020026421	A1CF	98	74.662	ENSOPRG00000010667	A1CF	96	83.650	Ochotona_princeps
ENSCAFG00020026421	A1CF	98	82.667	ENSONIG00000019105	a1cf	100	75.856	Oreochromis_niloticus
ENSCAFG00020026421	A1CF	98	90.635	ENSOANG00000007360	A1CF	99	87.580	Ornithorhynchus_anatinus
ENSCAFG00020026421	A1CF	98	94.276	ENSOCUG00000011587	A1CF	100	92.114	Oryctolagus_cuniculus
ENSCAFG00020026421	A1CF	98	82.609	ENSORLG00000013342	a1cf	100	74.267	Oryzias_latipes
ENSCAFG00020026421	A1CF	98	82.609	ENSORLG00020000586	a1cf	100	75.327	Oryzias_latipes_hni
ENSCAFG00020026421	A1CF	98	82.609	ENSORLG00015018569	a1cf	100	75.163	Oryzias_latipes_hsok
ENSCAFG00020026421	A1CF	98	82.667	ENSOMEG00000013531	a1cf	100	73.977	Oryzias_melastigma
ENSCAFG00020026421	A1CF	100	93.412	ENSOGAG00000012884	A1CF	100	93.581	Otolemur_garnettii
ENSCAFG00020026421	A1CF	100	94.454	ENSOARG00000013695	A1CF	100	94.454	Ovis_aries
ENSCAFG00020026421	A1CF	98	95.608	ENSPPAG00000028115	A1CF	99	96.755	Pan_paniscus
ENSCAFG00020026421	A1CF	100	97.128	ENSPPRG00000012180	A1CF	100	97.128	Panthera_pardus
ENSCAFG00020026421	A1CF	100	97.128	ENSPTIG00000021223	A1CF	100	97.128	Panthera_tigris_altaica
ENSCAFG00020026421	A1CF	100	95.455	ENSPTRG00000002508	A1CF	100	94.613	Pan_troglodytes
ENSCAFG00020026421	A1CF	100	94.595	ENSPANG00000021988	A1CF	100	94.088	Papio_anubis
ENSCAFG00020026421	A1CF	98	85.235	ENSPKIG00000025176	a1cf	100	80.402	Paramormyrops_kingsleyae
ENSCAFG00020026421	A1CF	98	90.572	ENSPSIG00000010318	A1CF	100	86.486	Pelodiscus_sinensis
ENSCAFG00020026421	A1CF	97	78.571	ENSPMGG00000013359	a1cf	99	66.438	Periophthalmus_magnuspinnatus
ENSCAFG00020026421	A1CF	100	93.277	ENSPEMG00000015021	A1cf	100	92.437	Peromyscus_maniculatus_bairdii
ENSCAFG00020026421	A1CF	98	91.246	ENSPCIG00000002175	A1CF	100	88.345	Phascolarctos_cinereus
ENSCAFG00020026421	A1CF	98	82.274	ENSPFOG00000006683	a1cf	100	77.199	Poecilia_formosa
ENSCAFG00020026421	A1CF	98	82.274	ENSPFOG00000007437	-	100	77.036	Poecilia_formosa
ENSCAFG00020026421	A1CF	98	82.333	ENSPLAG00000000026	a1cf	100	75.896	Poecilia_latipinna
ENSCAFG00020026421	A1CF	98	82.333	ENSPLAG00000001210	-	100	75.896	Poecilia_latipinna
ENSCAFG00020026421	A1CF	100	68.137	ENSPMEG00000015529	-	100	69.608	Poecilia_mexicana
ENSCAFG00020026421	A1CF	100	66.993	ENSPMEG00000000921	a1cf	100	68.464	Poecilia_mexicana
ENSCAFG00020026421	A1CF	98	81.940	ENSPREG00000016298	a1cf	100	76.710	Poecilia_reticulata
ENSCAFG00020026421	A1CF	100	94.622	ENSPPYG00000002819	A1CF	100	94.286	Pongo_abelii
ENSCAFG00020026421	A1CF	86	77.220	ENSPCAG00000006463	A1CF	79	72.669	Procavia_capensis
ENSCAFG00020026421	A1CF	100	94.966	ENSPCOG00000024172	A1CF	100	94.966	Propithecus_coquereli
ENSCAFG00020026421	A1CF	98	82.609	ENSPNYG00000017944	a1cf	100	77.325	Pundamilia_nyererei
ENSCAFG00020026421	A1CF	98	84.615	ENSPNAG00000007704	a1cf	100	78.974	Pygocentrus_nattereri
ENSCAFG00020026421	A1CF	98	93.939	ENSRNOG00000033195	A1cf	100	90.084	Rattus_norvegicus
ENSCAFG00020026421	A1CF	98	93.939	ENSRBIG00000042892	A1CF	100	91.929	Rhinopithecus_bieti
ENSCAFG00020026421	A1CF	100	96.284	ENSRROG00000041398	A1CF	100	96.284	Rhinopithecus_roxellana
ENSCAFG00020026421	A1CF	100	95.798	ENSSBOG00000021930	A1CF	100	95.798	Saimiri_boliviensis_boliviensis
ENSCAFG00020026421	A1CF	100	89.545	ENSSHAG00000005096	A1CF	100	89.376	Sarcophilus_harrisii
ENSCAFG00020026421	A1CF	98	84.281	ENSSFOG00015011774	a1cf	100	78.109	Scleropages_formosus
ENSCAFG00020026421	A1CF	98	82.274	ENSSMAG00000013271	a1cf	100	75.244	Scophthalmus_maximus
ENSCAFG00020026421	A1CF	98	81.605	ENSSDUG00000013930	a1cf	100	76.962	Seriola_dumerili
ENSCAFG00020026421	A1CF	98	81.667	ENSSLDG00000004290	a1cf	100	70.100	Seriola_lalandi_dorsalis
ENSCAFG00020026421	A1CF	96	83.304	ENSSARG00000005940	A1CF	96	83.039	Sorex_araneus
ENSCAFG00020026421	A1CF	98	89.865	ENSSPUG00000006797	A1CF	95	87.080	Sphenodon_punctatus
ENSCAFG00020026421	A1CF	100	95.798	ENSSSCG00000010431	A1CF	100	95.798	Sus_scrofa
ENSCAFG00020026421	A1CF	98	90.203	ENSTGUG00000005090	A1CF	100	87.960	Taeniopygia_guttata
ENSCAFG00020026421	A1CF	98	81.544	ENSTRUG00000001982	a1cf	100	73.573	Takifugu_rubripes
ENSCAFG00020026421	A1CF	98	81.000	ENSTNIG00000003580	a1cf	100	74.309	Tetraodon_nigroviridis
ENSCAFG00020026421	A1CF	98	88.552	ENSTTRG00000013190	A1CF	95	86.828	Tursiops_truncatus
ENSCAFG00020026421	A1CF	98	98.316	ENSUAMG00000020065	A1CF	100	96.284	Ursus_americanus
ENSCAFG00020026421	A1CF	100	97.462	ENSUMAG00000011162	A1CF	100	97.462	Ursus_maritimus
ENSCAFG00020026421	A1CF	98	96.970	ENSVPAG00000006130	A1CF	86	88.868	Vicugna_pacos
ENSCAFG00020026421	A1CF	100	98.475	ENSVVUG00000002504	A1CF	100	98.475	Vulpes_vulpes
ENSCAFG00020026421	A1CF	100	79.195	ENSXETG00000006611	a1cf	100	79.195	Xenopus_tropicalis
ENSCAFG00020026421	A1CF	98	82.333	ENSXCOG00000003302	a1cf	100	76.393	Xiphophorus_couchianus
ENSCAFG00020026421	A1CF	98	82.274	ENSXMAG00000016703	a1cf	100	77.541	Xiphophorus_maculatus