EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCANG00000018948 (Gene tree)
Gene ID: -
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Colobus_angolensis_palliatus
Status: putative
Strand: Minus strand
Length: 75708 bases
Position: chrKN979530.1:6573496-6649203
Accession: 20320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCANP00000005579	RRM_1	PF00076.22	4.9e-16	1	1
ENSCANP00000005569	RRM_1	PF00076.22	1.5e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCANT00000021313	PSPC1-202	909	-	ENSCANP00000005579	302 (aa)	-	A0A2K5HMJ8
ENSCANT00000021279	PSPC1-201	1302	-	ENSCANP00000005569	433 (aa)	-	A0A2K5HMI8

Gene Model

Click here to download ENSCANG00000018948's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCANG00000018948's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCANG00000018948	PSPC1	75	75.221	ENSCANG00000025310	NONO	92	71.779
ENSCANG00000018948	PSPC1	78	75.210	ENSCANG00000028087	-	60	75.598

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCANG00000018948	PSPC1	88	99.245	ENSG00000121390	PSPC1	67	99.245	Homo_sapiens
ENSCANG00000018948	PSPC1	87	82.824	ENSAPOG00000015946	pspc1	64	70.741	Acanthochromis_polyacanthus
ENSCANG00000018948	PSPC1	87	100.000	ENSAMEG00000017420	PSPC1	78	85.679	Ailuropoda_melanoleuca
ENSCANG00000018948	PSPC1	87	72.727	ENSACIG00000018695	pspc1	67	64.655	Amphilophus_citrinellus
ENSCANG00000018948	PSPC1	87	82.061	ENSAOCG00000005279	pspc1	65	68.231	Amphiprion_ocellaris
ENSCANG00000018948	PSPC1	87	82.061	ENSAPEG00000015927	pspc1	65	68.231	Amphiprion_percula
ENSCANG00000018948	PSPC1	87	66.540	ENSATEG00000004878	pspc1	67	61.932	Anabas_testudineus
ENSCANG00000018948	PSPC1	87	96.591	ENSAPLG00000006246	PSPC1	99	81.841	Anas_platyrhynchos
ENSCANG00000018948	PSPC1	87	96.578	ENSACAG00000002093	PSPC1	77	77.995	Anolis_carolinensis
ENSCANG00000018948	PSPC1	87	100.000	ENSANAG00000000059	PSPC1	77	90.339	Aotus_nancymaae
ENSCANG00000018948	PSPC1	89	70.632	ENSACLG00000027220	pspc1	76	59.949	Astatotilapia_calliptera
ENSCANG00000018948	PSPC1	87	79.851	ENSAMXG00000036881	pspc1	70	58.839	Astyanax_mexicanus
ENSCANG00000018948	PSPC1	87	100.000	ENSBTAG00000003934	PSPC1	77	88.491	Bos_taurus
ENSCANG00000018948	PSPC1	87	100.000	ENSCJAG00000004554	PSPC1	77	91.579	Callithrix_jacchus
ENSCANG00000018948	PSPC1	87	100.000	ENSCAFG00020002009	PSPC1	67	100.000	Canis_lupus_dingo
ENSCANG00000018948	PSPC1	87	100.000	ENSCHIG00000016708	PSPC1	78	85.432	Capra_hircus
ENSCANG00000018948	PSPC1	87	89.057	ENSTSYG00000032882	PSPC1	99	80.180	Carlito_syrichta
ENSCANG00000018948	PSPC1	88	99.245	ENSCPOG00000000395	PSPC1	68	99.245	Cavia_porcellus
ENSCANG00000018948	PSPC1	87	100.000	ENSCCAG00000033498	PSPC1	78	85.926	Cebus_capucinus
ENSCANG00000018948	PSPC1	87	100.000	ENSCATG00000036434	PSPC1	72	100.000	Cercocebus_atys
ENSCANG00000018948	PSPC1	87	100.000	ENSCLAG00000005241	PSPC1	91	85.012	Chinchilla_lanigera
ENSCANG00000018948	PSPC1	87	100.000	ENSCHOG00000008913	PSPC1	77	82.469	Choloepus_hoffmanni
ENSCANG00000018948	PSPC1	87	96.198	ENSCPBG00000020859	PSPC1	78	80.296	Chrysemys_picta_bellii
ENSCANG00000018948	PSPC1	87	100.000	ENSCGRG00001018368	Pspc1	78	84.938	Cricetulus_griseus_chok1gshd
ENSCANG00000018948	PSPC1	87	100.000	ENSCGRG00000011724	Pspc1	78	84.938	Cricetulus_griseus_crigri
ENSCANG00000018948	PSPC1	87	80.303	ENSCVAG00000007679	-	52	80.303	Cyprinodon_variegatus
ENSCANG00000018948	PSPC1	87	82.061	ENSDARG00000006621	pspc1	66	82.061	Danio_rerio
ENSCANG00000018948	PSPC1	87	100.000	ENSDNOG00000011078	PSPC1	77	84.938	Dasypus_novemcinctus
ENSCANG00000018948	PSPC1	87	99.620	ENSDORG00000016050	Pspc1	80	83.855	Dipodomys_ordii
ENSCANG00000018948	PSPC1	51	100.000	ENSETEG00000000502	-	55	100.000	Echinops_telfairi
ENSCANG00000018948	PSPC1	87	74.621	ENSEBUG00000003964	-	55	51.445	Eptatretus_burgeri
ENSCANG00000018948	PSPC1	75	48.606	ENSEBUG00000010133	pspc1	71	47.059	Eptatretus_burgeri
ENSCANG00000018948	PSPC1	88	99.245	ENSEASG00005000119	PSPC1	68	99.245	Equus_asinus_asinus
ENSCANG00000018948	PSPC1	88	99.245	ENSECAG00000017286	PSPC1	68	99.245	Equus_caballus
ENSCANG00000018948	PSPC1	61	91.803	ENSEEUG00000011288	-	51	91.803	Erinaceus_europaeus
ENSCANG00000018948	PSPC1	86	83.525	ENSELUG00000003746	pspc1	63	83.525	Esox_lucius
ENSCANG00000018948	PSPC1	87	100.000	ENSFCAG00000027841	PSPC1	67	100.000	Felis_catus
ENSCANG00000018948	PSPC1	87	96.958	ENSFALG00000008750	PSPC1	77	80.788	Ficedula_albicollis
ENSCANG00000018948	PSPC1	87	100.000	ENSFDAG00000002617	PSPC1	79	85.185	Fukomys_damarensis
ENSCANG00000018948	PSPC1	75	84.513	ENSGMOG00000015074	pspc1	59	81.592	Gadus_morhua
ENSCANG00000018948	PSPC1	87	96.958	ENSGALG00000017142	PSPC1	78	80.788	Gallus_gallus
ENSCANG00000018948	PSPC1	87	80.075	ENSGAFG00000006327	pspc1	55	80.075	Gambusia_affinis
ENSCANG00000018948	PSPC1	88	74.340	ENSGACG00000014901	pspc1	74	74.340	Gasterosteus_aculeatus
ENSCANG00000018948	PSPC1	87	96.198	ENSGAGG00000019164	PSPC1	78	80.296	Gopherus_agassizii
ENSCANG00000018948	PSPC1	88	99.245	ENSGGOG00000003414	PSPC1	67	99.245	Gorilla_gorilla
ENSCANG00000018948	PSPC1	87	80.916	ENSHBUG00000001139	pspc1	77	57.805	Haplochromis_burtoni
ENSCANG00000018948	PSPC1	87	100.000	ENSHGLG00000018811	PSPC1	78	85.185	Heterocephalus_glaber_female
ENSCANG00000018948	PSPC1	75	100.000	ENSHGLG00100007962	PSPC1	69	100.000	Heterocephalus_glaber_male
ENSCANG00000018948	PSPC1	87	75.665	ENSHCOG00000013251	pspc1	59	73.764	Hippocampus_comes
ENSCANG00000018948	PSPC1	87	84.351	ENSIPUG00000013192	pspc1	77	62.169	Ictalurus_punctatus
ENSCANG00000018948	PSPC1	88	99.245	ENSSTOG00000026833	PSPC1	67	99.245	Ictidomys_tridecemlineatus
ENSCANG00000018948	PSPC1	87	99.618	ENSJJAG00000018334	Pspc1	78	85.185	Jaculus_jaculus
ENSCANG00000018948	PSPC1	75	70.044	ENSKMAG00000013525	-	51	69.912	Kryptolebias_marmoratus
ENSCANG00000018948	PSPC1	87	81.298	ENSLBEG00000004474	pspc1	56	81.298	Labrus_bergylta
ENSCANG00000018948	PSPC1	87	87.452	ENSLACG00000010762	PSPC1	77	72.660	Latimeria_chalumnae
ENSCANG00000018948	PSPC1	87	89.313	ENSLOCG00000010832	pspc1	80	72.346	Lepisosteus_oculatus
ENSCANG00000018948	PSPC1	87	100.000	ENSLAFG00000010968	PSPC1	78	85.679	Loxodonta_africana
ENSCANG00000018948	PSPC1	87	100.000	ENSMFAG00000032728	PSPC1	73	100.000	Macaca_fascicularis
ENSCANG00000018948	PSPC1	89	99.627	ENSMMUG00000020262	PSPC1	72	99.248	Macaca_mulatta
ENSCANG00000018948	PSPC1	87	100.000	ENSMNEG00000027401	PSPC1	77	85.926	Macaca_nemestrina
ENSCANG00000018948	PSPC1	87	100.000	ENSMLEG00000039043	PSPC1	94	86.967	Mandrillus_leucophaeus
ENSCANG00000018948	PSPC1	87	80.153	ENSMAMG00000004333	pspc1	71	60.714	Mastacembelus_armatus
ENSCANG00000018948	PSPC1	89	70.632	ENSMZEG00005005726	pspc1	76	59.949	Maylandia_zebra
ENSCANG00000018948	PSPC1	87	96.591	ENSMGAG00000015134	PSPC1	100	81.281	Meleagris_gallopavo
ENSCANG00000018948	PSPC1	87	90.076	ENSMAUG00000021067	Pspc1	73	85.285	Mesocricetus_auratus
ENSCANG00000018948	PSPC1	88	99.245	ENSMICG00000013970	PSPC1	68	99.245	Microcebus_murinus
ENSCANG00000018948	PSPC1	87	100.000	ENSMOCG00000006060	Pspc1	78	84.938	Microtus_ochrogaster
ENSCANG00000018948	PSPC1	87	99.618	ENSMODG00000008029	PSPC1	59	82.834	Monodelphis_domestica
ENSCANG00000018948	PSPC1	87	79.389	ENSMALG00000008914	pspc1	51	79.389	Monopterus_albus
ENSCANG00000018948	PSPC1	87	99.620	MGP_CAROLIEiJ_G0019341	Pspc1	78	84.729	Mus_caroli
ENSCANG00000018948	PSPC1	87	99.620	ENSMUSG00000021938	Pspc1	78	84.975	Mus_musculus
ENSCANG00000018948	PSPC1	87	99.620	MGP_PahariEiJ_G0030359	Pspc1	78	84.729	Mus_pahari
ENSCANG00000018948	PSPC1	87	99.620	MGP_SPRETEiJ_G0020232	Pspc1	78	84.975	Mus_spretus
ENSCANG00000018948	PSPC1	87	100.000	ENSMPUG00000013347	PSPC1	78	85.679	Mustela_putorius_furo
ENSCANG00000018948	PSPC1	87	98.491	ENSMLUG00000017663	PSPC1	78	84.559	Myotis_lucifugus
ENSCANG00000018948	PSPC1	87	100.000	ENSNGAG00000011271	Pspc1	78	85.432	Nannospalax_galili
ENSCANG00000018948	PSPC1	87	73.208	ENSNBRG00000014059	pspc1	63	72.308	Neolamprologus_brichardi
ENSCANG00000018948	PSPC1	87	100.000	ENSNLEG00000001294	PSPC1	78	86.173	Nomascus_leucogenys
ENSCANG00000018948	PSPC1	65	100.000	ENSMEUG00000000476	PSPC1	64	96.377	Notamacropus_eugenii
ENSCANG00000018948	PSPC1	87	93.893	ENSODEG00000019012	-	78	77.612	Octodon_degus
ENSCANG00000018948	PSPC1	87	78.244	ENSODEG00000007817	-	77	77.387	Octodon_degus
ENSCANG00000018948	PSPC1	87	81.679	ENSONIG00000012010	pspc1	51	81.679	Oreochromis_niloticus
ENSCANG00000018948	PSPC1	87	99.618	ENSOANG00000009017	-	100	84.712	Ornithorhynchus_anatinus
ENSCANG00000018948	PSPC1	87	72.519	ENSOANG00000011381	-	80	61.772	Ornithorhynchus_anatinus
ENSCANG00000018948	PSPC1	87	100.000	ENSOCUG00000006153	PSPC1	77	85.679	Oryctolagus_cuniculus
ENSCANG00000018948	PSPC1	87	81.298	ENSORLG00000004232	-	82	53.472	Oryzias_latipes
ENSCANG00000018948	PSPC1	87	80.534	ENSORLG00020000578	PSPC1	86	52.026	Oryzias_latipes_hni
ENSCANG00000018948	PSPC1	87	81.679	ENSORLG00015017480	pspc1	71	58.333	Oryzias_latipes_hsok
ENSCANG00000018948	PSPC1	70	82.857	ENSOMEG00000003779	pspc1	96	82.775	Oryzias_melastigma
ENSCANG00000018948	PSPC1	87	100.000	ENSOGAG00000012643	PSPC1	77	85.926	Otolemur_garnettii
ENSCANG00000018948	PSPC1	87	99.242	ENSOARG00000014163	PSPC1	84	85.012	Ovis_aries
ENSCANG00000018948	PSPC1	89	100.000	ENSPPAG00000009836	PSPC1	85	92.800	Pan_paniscus
ENSCANG00000018948	PSPC1	87	100.000	ENSPPRG00000008833	PSPC1	78	85.926	Panthera_pardus
ENSCANG00000018948	PSPC1	87	99.240	ENSPTIG00000016917	PSPC1	95	80.266	Panthera_tigris_altaica
ENSCANG00000018948	PSPC1	88	99.245	ENSPTRG00000005677	PSPC1	67	99.245	Pan_troglodytes
ENSCANG00000018948	PSPC1	87	100.000	ENSPANG00000001992	PSPC1	72	100.000	Papio_anubis
ENSCANG00000018948	PSPC1	87	85.932	ENSPKIG00000003578	pspc1	51	85.932	Paramormyrops_kingsleyae
ENSCANG00000018948	PSPC1	87	95.817	ENSPSIG00000005168	PSPC1	77	80.049	Pelodiscus_sinensis
ENSCANG00000018948	PSPC1	75	77.093	ENSPMGG00000015135	pspc1	62	76.991	Periophthalmus_magnuspinnatus
ENSCANG00000018948	PSPC1	87	100.000	ENSPEMG00000015214	Pspc1	78	85.185	Peromyscus_maniculatus_bairdii
ENSCANG00000018948	PSPC1	66	49.756	ENSPMAG00000004618	pspc1	62	49.756	Petromyzon_marinus
ENSCANG00000018948	PSPC1	87	99.618	ENSPCIG00000017680	PSPC1	78	84.198	Phascolarctos_cinereus
ENSCANG00000018948	PSPC1	87	79.401	ENSPFOG00000003362	pspc1	81	54.608	Poecilia_formosa
ENSCANG00000018948	PSPC1	87	79.401	ENSPLAG00000011540	pspc1	80	54.608	Poecilia_latipinna
ENSCANG00000018948	PSPC1	87	79.026	ENSPMEG00000008322	pspc1	80	54.378	Poecilia_mexicana
ENSCANG00000018948	PSPC1	87	79.026	ENSPREG00000007786	pspc1	80	54.608	Poecilia_reticulata
ENSCANG00000018948	PSPC1	87	100.000	ENSPPYG00000005186	PSPC1	78	85.679	Pongo_abelii
ENSCANG00000018948	PSPC1	87	99.620	ENSPCOG00000014364	PSPC1	77	87.245	Propithecus_coquereli
ENSCANG00000018948	PSPC1	87	99.618	ENSPVAG00000005036	PSPC1	78	82.222	Pteropus_vampyrus
ENSCANG00000018948	PSPC1	89	70.632	ENSPNYG00000008893	pspc1	76	59.949	Pundamilia_nyererei
ENSCANG00000018948	PSPC1	87	81.818	ENSPNAG00000016511	pspc1	57	81.818	Pygocentrus_nattereri
ENSCANG00000018948	PSPC1	87	100.000	ENSRNOG00000020782	Pspc1	78	84.691	Rattus_norvegicus
ENSCANG00000018948	PSPC1	88	99.245	ENSRBIG00000036057	PSPC1	74	99.245	Rhinopithecus_bieti
ENSCANG00000018948	PSPC1	88	99.245	ENSRROG00000036334	PSPC1	67	99.245	Rhinopithecus_roxellana
ENSCANG00000018948	PSPC1	92	98.201	ENSSBOG00000028172	PSPC1	90	98.201	Saimiri_boliviensis_boliviensis
ENSCANG00000018948	PSPC1	87	89.394	ENSSHAG00000004696	PSPC1	78	83.538	Sarcophilus_harrisii
ENSCANG00000018948	PSPC1	87	88.168	ENSSFOG00015001395	pspc1	56	88.168	Scleropages_formosus
ENSCANG00000018948	PSPC1	87	78.598	ENSSMAG00000001761	pspc1	67	78.598	Scophthalmus_maximus
ENSCANG00000018948	PSPC1	87	83.206	ENSSDUG00000010651	pspc1	77	56.813	Seriola_dumerili
ENSCANG00000018948	PSPC1	87	74.242	ENSSLDG00000004284	pspc1	70	64.387	Seriola_lalandi_dorsalis
ENSCANG00000018948	PSPC1	87	88.931	ENSSARG00000000888	PSPC1	78	84.444	Sorex_araneus
ENSCANG00000018948	PSPC1	84	86.016	ENSSPUG00000008550	PSPC1	76	85.488	Sphenodon_punctatus
ENSCANG00000018948	PSPC1	87	82.443	ENSSPAG00000001921	pspc1	67	60.160	Stegastes_partitus
ENSCANG00000018948	PSPC1	87	100.000	ENSSSCG00000009569	PSPC1	69	98.496	Sus_scrofa
ENSCANG00000018948	PSPC1	87	96.958	ENSTGUG00000011295	PSPC1	87	80.788	Taeniopygia_guttata
ENSCANG00000018948	PSPC1	87	72.901	ENSTRUG00000011335	pspc1	51	72.901	Takifugu_rubripes
ENSCANG00000018948	PSPC1	87	74.809	ENSTNIG00000010358	pspc1	55	74.809	Tetraodon_nigroviridis
ENSCANG00000018948	PSPC1	87	99.618	ENSTBEG00000002361	PSPC1	51	99.618	Tupaia_belangeri
ENSCANG00000018948	PSPC1	87	100.000	ENSTTRG00000003343	PSPC1	78	85.679	Tursiops_truncatus
ENSCANG00000018948	PSPC1	75	100.000	ENSUAMG00000012309	PSPC1	65	100.000	Ursus_americanus
ENSCANG00000018948	PSPC1	87	99.618	ENSUMAG00000013993	PSPC1	73	99.618	Ursus_maritimus
ENSCANG00000018948	PSPC1	87	100.000	ENSVPAG00000010029	PSPC1	100	86.717	Vicugna_pacos
ENSCANG00000018948	PSPC1	87	100.000	ENSVVUG00000006414	PSPC1	68	100.000	Vulpes_vulpes
ENSCANG00000018948	PSPC1	87	78.947	ENSXCOG00000017438	pspc1	63	78.947	Xiphophorus_couchianus
ENSCANG00000018948	PSPC1	87	79.323	ENSXMAG00000007929	pspc1	63	79.323	Xiphophorus_maculatus