EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCANG00000029208 (Gene tree)
Gene ID: 105502133
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Colobus_angolensis_palliatus
Status: putative
Strand: Minus strand
Length: 42231 bases
Position: chrKN985733.1:3396852-3439082
Accession: 105502133
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCANP00000011717	EST1	PF10374.9	9.3e-24	1	1
ENSCANP00000011710	EST1	PF10374.9	1.1e-23	1	1
ENSCANP00000011717	EST1_DNA_bind	PF10373.9	3e-40	1	2
ENSCANP00000011717	EST1_DNA_bind	PF10373.9	3e-40	2	2
ENSCANP00000011710	EST1_DNA_bind	PF10373.9	6.3e-40	1	2
ENSCANP00000011710	EST1_DNA_bind	PF10373.9	6.3e-40	2	2
ENSCANP00000011717	PIN_4	PF13638.6	3.1e-05	1	1
ENSCANP00000011710	PIN_4	PF13638.6	3.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCANT00000034610	SMG5-201	3018	-	ENSCANP00000011710	1005 (aa)	-	A0A2K5I506
ENSCANT00000034618	SMG5-202	2958	XM_011928511	ENSCANP00000011717	985 (aa)	XP_011783901	A0A2K5I5B9

Gene Model

Click here to download ENSCANG00000029208's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCANG00000029208's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCANG00000029208	SMG5	100	95.079	ENSG00000198952	SMG5	100	95.079	Homo_sapiens
ENSCANG00000029208	SMG5	99	64.706	ENSAPOG00000019690	smg5	93	76.905	Acanthochromis_polyacanthus
ENSCANG00000029208	SMG5	98	89.930	ENSAMEG00000014458	SMG5	100	89.930	Ailuropoda_melanoleuca
ENSCANG00000029208	SMG5	99	62.250	ENSACIG00000001353	smg5	99	63.985	Amphilophus_citrinellus
ENSCANG00000029208	SMG5	98	62.069	ENSAOCG00000019483	smg5	93	64.139	Amphiprion_ocellaris
ENSCANG00000029208	SMG5	98	64.016	ENSAPEG00000022949	smg5	98	63.845	Amphiprion_percula
ENSCANG00000029208	SMG5	99	63.471	ENSATEG00000005348	smg5	99	64.888	Anabas_testudineus
ENSCANG00000029208	SMG5	98	75.220	ENSAPLG00000010263	SMG5	100	74.927	Anas_platyrhynchos
ENSCANG00000029208	SMG5	100	93.898	ENSANAG00000032899	SMG5	100	93.898	Aotus_nancymaae
ENSCANG00000029208	SMG5	99	62.201	ENSACLG00000009311	smg5	99	63.820	Astatotilapia_calliptera
ENSCANG00000029208	SMG5	100	92.224	ENSBTAG00000009435	SMG5	100	92.224	Bos_taurus
ENSCANG00000029208	SMG5	99	43.478	ENSBTAG00000021747	-	99	42.623	Bos_taurus
ENSCANG00000029208	SMG5	100	93.996	ENSCJAG00000005684	SMG5	100	93.996	Callithrix_jacchus
ENSCANG00000029208	SMG5	100	90.945	ENSCAFG00000016839	SMG5	100	89.961	Canis_familiaris
ENSCANG00000029208	SMG5	100	90.945	ENSCAFG00020006061	SMG5	100	89.961	Canis_lupus_dingo
ENSCANG00000029208	SMG5	99	44.179	ENSCHIG00000006323	-	99	42.970	Capra_hircus
ENSCANG00000029208	SMG5	100	92.126	ENSCHIG00000007709	SMG5	100	92.126	Capra_hircus
ENSCANG00000029208	SMG5	100	92.920	ENSTSYG00000004099	SMG5	100	92.920	Carlito_syrichta
ENSCANG00000029208	SMG5	97	70.994	ENSCAPG00000003631	SMG5	100	71.547	Cavia_aperea
ENSCANG00000029208	SMG5	100	91.552	ENSCPOG00000015696	SMG5	100	91.945	Cavia_porcellus
ENSCANG00000029208	SMG5	100	93.898	ENSCCAG00000027409	SMG5	100	93.898	Cebus_capucinus
ENSCANG00000029208	SMG5	100	95.571	ENSCATG00000030539	SMG5	100	95.571	Cercocebus_atys
ENSCANG00000029208	SMG5	100	91.945	ENSCLAG00000003983	SMG5	100	92.338	Chinchilla_lanigera
ENSCANG00000029208	SMG5	100	95.472	ENSCSAG00000002120	SMG5	100	95.472	Chlorocebus_sabaeus
ENSCANG00000029208	SMG5	54	87.004	ENSCHOG00000008741	-	57	87.004	Choloepus_hoffmanni
ENSCANG00000029208	SMG5	93	74.746	ENSCPBG00000025848	SMG5	100	74.442	Chrysemys_picta_bellii
ENSCANG00000029208	SMG5	93	34.778	ENSCING00000008706	-	99	34.872	Ciona_intestinalis
ENSCANG00000029208	SMG5	100	88.507	ENSCGRG00001006336	Smg5	100	88.802	Cricetulus_griseus_chok1gshd
ENSCANG00000029208	SMG5	98	88.431	ENSCGRG00000005111	Smg5	100	88.721	Cricetulus_griseus_crigri
ENSCANG00000029208	SMG5	99	62.791	ENSCSEG00000014220	smg5	99	63.548	Cynoglossus_semilaevis
ENSCANG00000029208	SMG5	99	57.936	ENSCVAG00000000529	smg5	99	58.658	Cyprinodon_variegatus
ENSCANG00000029208	SMG5	100	87.894	ENSDNOG00000000051	SMG5	100	87.894	Dasypus_novemcinctus
ENSCANG00000029208	SMG5	92	36.403	ENSDNOG00000039862	-	100	35.048	Dasypus_novemcinctus
ENSCANG00000029208	SMG5	100	90.177	ENSDORG00000010382	Smg5	100	89.784	Dipodomys_ordii
ENSCANG00000029208	SMG5	85	97.087	ENSETEG00000010336	SMG5	89	97.087	Echinops_telfairi
ENSCANG00000029208	SMG5	90	45.657	ENSEBUG00000003739	smg5	98	45.339	Eptatretus_burgeri
ENSCANG00000029208	SMG5	100	92.717	ENSEASG00005019122	SMG5	100	92.717	Equus_asinus_asinus
ENSCANG00000029208	SMG5	100	92.717	ENSECAG00000001389	SMG5	100	92.717	Equus_caballus
ENSCANG00000029208	SMG5	72	97.695	ENSEEUG00000012690	SMG5	75	97.695	Erinaceus_europaeus
ENSCANG00000029208	SMG5	99	62.668	ENSELUG00000012585	smg5	99	62.860	Esox_lucius
ENSCANG00000029208	SMG5	100	90.551	ENSFCAG00000011783	SMG5	100	89.577	Felis_catus
ENSCANG00000029208	SMG5	60	81.636	ENSFALG00000001166	-	99	81.742	Ficedula_albicollis
ENSCANG00000029208	SMG5	98	89.527	ENSFDAG00000017388	SMG5	100	89.325	Fukomys_damarensis
ENSCANG00000029208	SMG5	97	59.639	ENSFHEG00000013939	smg5	95	67.487	Fundulus_heteroclitus
ENSCANG00000029208	SMG5	99	59.175	ENSGMOG00000007310	smg5	93	76.136	Gadus_morhua
ENSCANG00000029208	SMG5	99	74.638	ENSGALG00000029918	-	100	74.381	Gallus_gallus
ENSCANG00000029208	SMG5	100	75.783	ENSGAGG00000016131	SMG5	100	75.594	Gopherus_agassizii
ENSCANG00000029208	SMG5	100	94.882	ENSGGOG00000010932	SMG5	100	94.882	Gorilla_gorilla
ENSCANG00000029208	SMG5	99	61.737	ENSHBUG00000008654	smg5	99	62.903	Haplochromis_burtoni
ENSCANG00000029208	SMG5	100	89.293	ENSHGLG00000019152	SMG5	100	89.489	Heterocephalus_glaber_female
ENSCANG00000029208	SMG5	90	88.938	ENSHGLG00100015948	SMG5	99	89.157	Heterocephalus_glaber_male
ENSCANG00000029208	SMG5	86	73.594	ENSHCOG00000010229	smg5	83	78.571	Hippocampus_comes
ENSCANG00000029208	SMG5	99	59.149	ENSIPUG00000006624	Smg5	99	59.745	Ictalurus_punctatus
ENSCANG00000029208	SMG5	100	92.421	ENSSTOG00000001780	SMG5	100	92.421	Ictidomys_tridecemlineatus
ENSCANG00000029208	SMG5	100	88.420	ENSJJAG00000022763	Smg5	100	88.616	Jaculus_jaculus
ENSCANG00000029208	SMG5	50	54.281	ENSKMAG00000014586	smg5	99	59.309	Kryptolebias_marmoratus
ENSCANG00000029208	SMG5	99	63.900	ENSLBEG00000002145	smg5	99	63.733	Labrus_bergylta
ENSCANG00000029208	SMG5	100	62.583	ENSLACG00000010521	SMG5	100	62.393	Latimeria_chalumnae
ENSCANG00000029208	SMG5	96	79.343	ENSLOCG00000008380	smg5	93	79.294	Lepisosteus_oculatus
ENSCANG00000029208	SMG5	100	90.354	ENSLAFG00000006241	SMG5	100	90.354	Loxodonta_africana
ENSCANG00000029208	SMG5	100	95.472	ENSMFAG00000045357	SMG5	100	95.472	Macaca_fascicularis
ENSCANG00000029208	SMG5	100	95.374	ENSMMUG00000000090	SMG5	100	95.374	Macaca_mulatta
ENSCANG00000029208	SMG5	100	95.374	ENSMNEG00000044425	SMG5	100	95.374	Macaca_nemestrina
ENSCANG00000029208	SMG5	100	89.216	ENSMLEG00000041192	SMG5	100	89.216	Mandrillus_leucophaeus
ENSCANG00000029208	SMG5	99	61.275	ENSMZEG00005015815	smg5	99	62.226	Maylandia_zebra
ENSCANG00000029208	SMG5	62	55.007	ENSMZEG00005016543	smg5	100	55.556	Maylandia_zebra
ENSCANG00000029208	SMG5	100	87.819	ENSMAUG00000010381	Smg5	100	88.114	Mesocricetus_auratus
ENSCANG00000029208	SMG5	57	45.009	ENSMAUG00000000043	-	96	44.271	Mesocricetus_auratus
ENSCANG00000029208	SMG5	100	93.307	ENSMICG00000002257	SMG5	100	93.307	Microcebus_murinus
ENSCANG00000029208	SMG5	100	88.235	ENSMOCG00000016590	Smg5	100	87.941	Microtus_ochrogaster
ENSCANG00000029208	SMG5	99	57.194	ENSMMOG00000017199	smg5	99	57.758	Mola_mola
ENSCANG00000029208	SMG5	87	85.586	ENSMODG00000016901	SMG5	98	86.036	Monodelphis_domestica
ENSCANG00000029208	SMG5	79	38.849	ENSMODG00000004735	-	86	40.282	Monodelphis_domestica
ENSCANG00000029208	SMG5	97	35.040	ENSMODG00000004511	-	99	34.195	Monodelphis_domestica
ENSCANG00000029208	SMG5	93	40.369	ENSMODG00000004532	-	83	40.698	Monodelphis_domestica
ENSCANG00000029208	SMG5	78	39.683	ENSMODG00000010675	-	84	39.944	Monodelphis_domestica
ENSCANG00000029208	SMG5	99	58.096	ENSMALG00000010375	smg5	93	75.058	Monopterus_albus
ENSCANG00000029208	SMG5	100	88.409	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSCANG00000029208	SMG5	100	88.507	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSCANG00000029208	SMG5	100	88.322	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSCANG00000029208	SMG5	100	88.409	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSCANG00000029208	SMG5	93	89.158	ENSMPUG00000004546	SMG5	100	88.316	Mustela_putorius_furo
ENSCANG00000029208	SMG5	100	91.096	ENSMLUG00000008518	SMG5	100	90.705	Myotis_lucifugus
ENSCANG00000029208	SMG5	100	90.265	ENSNGAG00000020706	Smg5	100	89.971	Nannospalax_galili
ENSCANG00000029208	SMG5	98	43.649	ENSNGAG00000012101	-	98	43.900	Nannospalax_galili
ENSCANG00000029208	SMG5	97	61.483	ENSNBRG00000004332	smg5	98	62.857	Neolamprologus_brichardi
ENSCANG00000029208	SMG5	100	94.783	ENSNLEG00000012439	SMG5	100	94.783	Nomascus_leucogenys
ENSCANG00000029208	SMG5	100	84.071	ENSMEUG00000012834	SMG5	100	83.186	Notamacropus_eugenii
ENSCANG00000029208	SMG5	100	90.650	ENSOPRG00000009152	SMG5	100	90.650	Ochotona_princeps
ENSCANG00000029208	SMG5	100	91.929	ENSODEG00000012237	SMG5	100	91.929	Octodon_degus
ENSCANG00000029208	SMG5	50	54.727	ENSONIG00000008632	smg5	99	58.813	Oreochromis_niloticus
ENSCANG00000029208	SMG5	98	91.331	ENSOCUG00000012886	SMG5	100	91.331	Oryctolagus_cuniculus
ENSCANG00000029208	SMG5	89	39.756	ENSOCUG00000023338	-	99	39.737	Oryctolagus_cuniculus
ENSCANG00000029208	SMG5	99	61.988	ENSORLG00020013127	smg5	99	63.707	Oryzias_latipes_hni
ENSCANG00000029208	SMG5	99	61.613	ENSORLG00015019014	smg5	99	63.521	Oryzias_latipes_hsok
ENSCANG00000029208	SMG5	100	91.240	ENSOGAG00000004966	SMG5	100	91.240	Otolemur_garnettii
ENSCANG00000029208	SMG5	99	43.756	ENSOARG00000011963	-	99	42.885	Ovis_aries
ENSCANG00000029208	SMG5	100	92.224	ENSOARG00000005778	SMG5	100	92.224	Ovis_aries
ENSCANG00000029208	SMG5	100	94.882	ENSPPAG00000011996	SMG5	100	94.882	Pan_paniscus
ENSCANG00000029208	SMG5	98	90.323	ENSPPRG00000011901	SMG5	100	89.315	Panthera_pardus
ENSCANG00000029208	SMG5	99	82.388	ENSPTIG00000007892	SMG5	98	81.984	Panthera_tigris_altaica
ENSCANG00000029208	SMG5	100	94.980	ENSPTRG00000049282	-	100	94.980	Pan_troglodytes
ENSCANG00000029208	SMG5	100	94.980	ENSPTRG00000023925	SMG5	100	94.980	Pan_troglodytes
ENSCANG00000029208	SMG5	100	95.571	ENSPANG00000011201	SMG5	100	95.571	Papio_anubis
ENSCANG00000029208	SMG5	99	62.162	ENSPKIG00000009402	smg5	99	63.343	Paramormyrops_kingsleyae
ENSCANG00000029208	SMG5	98	76.961	ENSPSIG00000015198	SMG5	100	76.710	Pelodiscus_sinensis
ENSCANG00000029208	SMG5	99	57.851	ENSPMGG00000010465	smg5	99	57.380	Periophthalmus_magnuspinnatus
ENSCANG00000029208	SMG5	100	88.802	ENSPEMG00000001819	Smg5	100	89.096	Peromyscus_maniculatus_bairdii
ENSCANG00000029208	SMG5	57	45.884	ENSPEMG00000010022	-	95	44.845	Peromyscus_maniculatus_bairdii
ENSCANG00000029208	SMG5	99	48.795	ENSPMAG00000000410	smg5	100	49.003	Petromyzon_marinus
ENSCANG00000029208	SMG5	100	85.560	ENSPCIG00000018938	SMG5	100	85.953	Phascolarctos_cinereus
ENSCANG00000029208	SMG5	50	54.963	ENSPFOG00000010191	smg5	99	59.500	Poecilia_formosa
ENSCANG00000029208	SMG5	50	55.000	ENSPLAG00000009332	smg5	99	59.322	Poecilia_latipinna
ENSCANG00000029208	SMG5	99	62.668	ENSPMEG00000014105	smg5	99	62.991	Poecilia_mexicana
ENSCANG00000029208	SMG5	93	69.195	ENSPREG00000017713	smg5	99	59.144	Poecilia_reticulata
ENSCANG00000029208	SMG5	100	95.177	ENSPPYG00000000723	SMG5	100	95.177	Pongo_abelii
ENSCANG00000029208	SMG5	72	97.656	ENSPCAG00000008412	SMG5	76	97.656	Procavia_capensis
ENSCANG00000029208	SMG5	100	93.406	ENSPCOG00000004741	SMG5	100	93.406	Propithecus_coquereli
ENSCANG00000029208	SMG5	100	82.480	ENSPVAG00000016748	SMG5	100	82.480	Pteropus_vampyrus
ENSCANG00000029208	SMG5	93	63.657	ENSPNYG00000013397	smg5	99	58.870	Pundamilia_nyererei
ENSCANG00000029208	SMG5	100	88.605	ENSRNOG00000019590	Smg5	100	88.703	Rattus_norvegicus
ENSCANG00000029208	SMG5	100	95.669	ENSRBIG00000027428	SMG5	100	95.669	Rhinopithecus_bieti
ENSCANG00000029208	SMG5	100	95.571	ENSRROG00000030035	SMG5	100	95.571	Rhinopithecus_roxellana
ENSCANG00000029208	SMG5	100	93.898	ENSSBOG00000033339	SMG5	100	93.898	Saimiri_boliviensis_boliviensis
ENSCANG00000029208	SMG5	98	85.185	ENSSHAG00000014163	SMG5	100	85.586	Sarcophilus_harrisii
ENSCANG00000029208	SMG5	99	33.860	ENSSHAG00000009572	-	80	42.752	Sarcophilus_harrisii
ENSCANG00000029208	SMG5	87	39.305	ENSSHAG00000000561	-	87	39.305	Sarcophilus_harrisii
ENSCANG00000029208	SMG5	61	42.623	ENSSHAG00000000935	-	75	44.348	Sarcophilus_harrisii
ENSCANG00000029208	SMG5	99	62.682	ENSSFOG00015024175	smg5	99	63.521	Scleropages_formosus
ENSCANG00000029208	SMG5	99	58.688	ENSSMAG00000013059	smg5	99	59.626	Scophthalmus_maximus
ENSCANG00000029208	SMG5	50	55.135	ENSSDUG00000007122	smg5	93	77.083	Seriola_dumerili
ENSCANG00000029208	SMG5	99	57.844	ENSSLDG00000011418	smg5	93	77.804	Seriola_lalandi_dorsalis
ENSCANG00000029208	SMG5	90	76.990	ENSSARG00000012484	SMG5	100	76.990	Sorex_araneus
ENSCANG00000029208	SMG5	93	73.812	ENSSPUG00000002260	SMG5	100	72.929	Sphenodon_punctatus
ENSCANG00000029208	SMG5	91	77.283	ENSSPAG00000014266	smg5	99	62.079	Stegastes_partitus
ENSCANG00000029208	SMG5	99	71.626	ENSSSCG00000039308	-	100	71.527	Sus_scrofa
ENSCANG00000029208	SMG5	100	94.822	ENSSSCG00000006490	-	100	94.822	Sus_scrofa
ENSCANG00000029208	SMG5	50	38.037	ENSSSCG00000037182	-	85	37.714	Sus_scrofa
ENSCANG00000029208	SMG5	99	76.855	ENSTGUG00000003748	-	100	76.660	Taeniopygia_guttata
ENSCANG00000029208	SMG5	99	62.548	ENSTRUG00000012580	smg5	99	61.776	Takifugu_rubripes
ENSCANG00000029208	SMG5	99	62.791	ENSTNIG00000010303	smg5	99	62.561	Tetraodon_nigroviridis
ENSCANG00000029208	SMG5	60	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSCANG00000029208	SMG5	100	87.697	ENSTTRG00000001401	SMG5	100	87.697	Tursiops_truncatus
ENSCANG00000029208	SMG5	100	89.862	ENSUAMG00000013721	SMG5	100	89.272	Ursus_americanus
ENSCANG00000029208	SMG5	98	91.390	ENSUMAG00000018041	SMG5	97	90.560	Ursus_maritimus
ENSCANG00000029208	SMG5	94	95.545	ENSVPAG00000009446	SMG5	95	95.545	Vicugna_pacos
ENSCANG00000029208	SMG5	100	90.650	ENSVVUG00000005887	SMG5	100	89.862	Vulpes_vulpes
ENSCANG00000029208	SMG5	76	62.343	ENSXETG00000033791	SMG5	99	61.713	Xenopus_tropicalis
ENSCANG00000029208	SMG5	99	62.705	ENSXMAG00000013499	smg5	99	63.052	Xiphophorus_maculatus