EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCANG00000029220 (Gene tree)
Gene ID: 105516485
Gene Symbol: UPF3B
Alias: HUPF3B|MRX62|RENT3B|UPF3BP1|UPF3BP2|UPF3BP3|UPF3X
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Colobus_angolensis_palliatus
Status: putative
Strand: Plus strand
Length: 20369 bases
Position: chrKN981402.1:174152-194520
Accession: 105516485
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCANP00000011676	Smg4_UPF3	PF03467.15	3.2e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCANT00000034576	UPF3B-201	957	XM_011948712	ENSCANP00000011676	318 (aa)	XP_011804102	A0A2K5I545

Gene Model

Click here to download ENSCANG00000029220's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCANG00000029220's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCANG00000029220	UPF3B	100	100.000	ENSG00000125351	UPF3B	99	98.131	Homo_sapiens
ENSCANG00000029220	UPF3B	66	68.720	ENSAPOG00000012775	upf3b	56	68.382	Acanthochromis_polyacanthus
ENSCANG00000029220	UPF3B	100	97.770	ENSAMEG00000000163	UPF3B	71	97.770	Ailuropoda_melanoleuca
ENSCANG00000029220	UPF3B	85	60.073	ENSACIG00000013582	upf3b	55	61.538	Amphilophus_citrinellus
ENSCANG00000029220	UPF3B	52	70.732	ENSACIG00000020468	upf3a	83	66.129	Amphilophus_citrinellus
ENSCANG00000029220	UPF3B	85	66.912	ENSAOCG00000000706	upf3b	56	66.912	Amphiprion_ocellaris
ENSCANG00000029220	UPF3B	66	68.720	ENSAPEG00000005545	upf3b	56	68.382	Amphiprion_percula
ENSCANG00000029220	UPF3B	66	69.194	ENSATEG00000018742	upf3b	55	68.750	Anabas_testudineus
ENSCANG00000029220	UPF3B	86	83.983	ENSACAG00000003625	UPF3B	69	76.471	Anolis_carolinensis
ENSCANG00000029220	UPF3B	90	72.822	ENSANAG00000033169	-	100	72.125	Aotus_nancymaae
ENSCANG00000029220	UPF3B	100	98.885	ENSANAG00000021894	-	100	98.742	Aotus_nancymaae
ENSCANG00000029220	UPF3B	100	89.963	ENSANAG00000025598	-	100	88.438	Aotus_nancymaae
ENSCANG00000029220	UPF3B	85	67.279	ENSACLG00000001649	upf3b	56	67.647	Astatotilapia_calliptera
ENSCANG00000029220	UPF3B	95	61.688	ENSAMXG00000000199	upf3b	97	59.871	Astyanax_mexicanus
ENSCANG00000029220	UPF3B	97	97.068	ENSBTAG00000035615	UPF3B	100	97.068	Bos_taurus
ENSCANG00000029220	UPF3B	50	68.125	ENSBTAG00000047365	-	72	68.125	Bos_taurus
ENSCANG00000029220	UPF3B	60	31.633	WBGene00004882	smg-4	50	31.098	Caenorhabditis_elegans
ENSCANG00000029220	UPF3B	100	98.885	ENSCJAG00000004975	UPF3B	100	98.742	Callithrix_jacchus
ENSCANG00000029220	UPF3B	100	97.026	ENSCAFG00000018426	UPF3B	71	97.026	Canis_familiaris
ENSCANG00000029220	UPF3B	100	92.937	ENSCAFG00020004074	UPF3B	74	94.872	Canis_lupus_dingo
ENSCANG00000029220	UPF3B	86	73.469	ENSCHIG00000011454	-	61	73.469	Capra_hircus
ENSCANG00000029220	UPF3B	100	98.141	ENSCHIG00000000247	-	70	98.141	Capra_hircus
ENSCANG00000029220	UPF3B	97	97.770	ENSCHIG00000018011	-	100	97.068	Capra_hircus
ENSCANG00000029220	UPF3B	100	97.398	ENSTSYG00000014690	UPF3B	100	92.615	Carlito_syrichta
ENSCANG00000029220	UPF3B	96	68.301	ENSCCAG00000029813	-	97	68.852	Cebus_capucinus
ENSCANG00000029220	UPF3B	100	70.462	ENSCCAG00000021964	-	100	70.462	Cebus_capucinus
ENSCANG00000029220	UPF3B	100	100.000	ENSCATG00000017506	UPF3B	100	100.000	Cercocebus_atys
ENSCANG00000029220	UPF3B	100	95.167	ENSCLAG00000003260	UPF3B	72	95.167	Chinchilla_lanigera
ENSCANG00000029220	UPF3B	100	100.000	ENSCSAG00000018348	UPF3B	70	100.000	Chlorocebus_sabaeus
ENSCANG00000029220	UPF3B	99	63.370	ENSCPBG00000020685	UPF3B	60	77.922	Chrysemys_picta_bellii
ENSCANG00000029220	UPF3B	57	46.667	ENSCING00000008396	-	91	51.370	Ciona_intestinalis
ENSCANG00000029220	UPF3B	85	83.643	ENSCGRG00001013643	-	73	80.297	Cricetulus_griseus_chok1gshd
ENSCANG00000029220	UPF3B	100	88.848	ENSCGRG00001006858	-	71	88.848	Cricetulus_griseus_chok1gshd
ENSCANG00000029220	UPF3B	84	94.009	ENSCGRG00000007627	Upf3b	67	94.009	Cricetulus_griseus_crigri
ENSCANG00000029220	UPF3B	85	66.788	ENSCSEG00000002046	upf3b	54	66.176	Cynoglossus_semilaevis
ENSCANG00000029220	UPF3B	85	67.153	ENSDARG00000000489	upf3b	55	67.153	Danio_rerio
ENSCANG00000029220	UPF3B	100	96.654	ENSDNOG00000008665	UPF3B	70	96.654	Dasypus_novemcinctus
ENSCANG00000029220	UPF3B	100	90.335	ENSDORG00000006077	Upf3b	72	90.335	Dipodomys_ordii
ENSCANG00000029220	UPF3B	99	94.796	ENSEASG00005012919	UPF3B	73	97.345	Equus_asinus_asinus
ENSCANG00000029220	UPF3B	99	94.796	ENSECAG00000016947	UPF3B	71	94.796	Equus_caballus
ENSCANG00000029220	UPF3B	85	67.647	ENSELUG00000020389	upf3b	57	63.729	Esox_lucius
ENSCANG00000029220	UPF3B	100	97.398	ENSFCAG00000004388	UPF3B	71	97.398	Felis_catus
ENSCANG00000029220	UPF3B	99	73.852	ENSFALG00000001569	UPF3B	67	72.085	Ficedula_albicollis
ENSCANG00000029220	UPF3B	100	96.654	ENSFDAG00000018869	UPF3B	72	96.654	Fukomys_damarensis
ENSCANG00000029220	UPF3B	65	66.029	ENSFHEG00000017895	upf3b	56	64.835	Fundulus_heteroclitus
ENSCANG00000029220	UPF3B	99	74.182	ENSGALG00000008618	UPF3B	69	74.182	Gallus_gallus
ENSCANG00000029220	UPF3B	65	65.550	ENSGAFG00000000829	upf3b	57	65.201	Gambusia_affinis
ENSCANG00000029220	UPF3B	90	67.820	ENSGACG00000017435	upf3b	100	68.166	Gasterosteus_aculeatus
ENSCANG00000029220	UPF3B	52	68.485	ENSGAGG00000001952	UPF3A	81	73.944	Gopherus_agassizii
ENSCANG00000029220	UPF3B	99	76.557	ENSGAGG00000001219	UPF3B	65	83.117	Gopherus_agassizii
ENSCANG00000029220	UPF3B	100	100.000	ENSGGOG00000023995	UPF3B	100	100.000	Gorilla_gorilla
ENSCANG00000029220	UPF3B	85	67.279	ENSHBUG00000017393	upf3b	56	67.647	Haplochromis_burtoni
ENSCANG00000029220	UPF3B	85	87.361	ENSHGLG00000011189	-	64	87.361	Heterocephalus_glaber_female
ENSCANG00000029220	UPF3B	100	95.911	ENSHGLG00000019582	-	71	95.911	Heterocephalus_glaber_female
ENSCANG00000029220	UPF3B	100	95.911	ENSHGLG00100002042	-	73	95.911	Heterocephalus_glaber_male
ENSCANG00000029220	UPF3B	85	87.361	ENSHGLG00100001889	-	65	87.361	Heterocephalus_glaber_male
ENSCANG00000029220	UPF3B	85	68.382	ENSHCOG00000017004	upf3b	55	68.382	Hippocampus_comes
ENSCANG00000029220	UPF3B	56	67.978	ENSHCOG00000013985	upf3a	66	72.611	Hippocampus_comes
ENSCANG00000029220	UPF3B	87	64.621	ENSIPUG00000019249	upf3b	63	65.672	Ictalurus_punctatus
ENSCANG00000029220	UPF3B	51	63.975	ENSSTOG00000030282	-	68	63.975	Ictidomys_tridecemlineatus
ENSCANG00000029220	UPF3B	100	96.283	ENSSTOG00000001101	UPF3B	71	96.283	Ictidomys_tridecemlineatus
ENSCANG00000029220	UPF3B	100	94.052	ENSJJAG00000000053	Upf3b	71	94.052	Jaculus_jaculus
ENSCANG00000029220	UPF3B	66	66.825	ENSKMAG00000020300	upf3b	56	66.544	Kryptolebias_marmoratus
ENSCANG00000029220	UPF3B	85	66.544	ENSLBEG00000028689	upf3b	56	66.176	Labrus_bergylta
ENSCANG00000029220	UPF3B	94	69.082	ENSLACG00000008691	UPF3B	65	68.498	Latimeria_chalumnae
ENSCANG00000029220	UPF3B	85	73.780	ENSLOCG00000002665	upf3a	51	73.780	Lepisosteus_oculatus
ENSCANG00000029220	UPF3B	85	67.647	ENSLOCG00000015238	upf3b	52	75.546	Lepisosteus_oculatus
ENSCANG00000029220	UPF3B	100	97.026	ENSLAFG00000001267	UPF3B	71	97.026	Loxodonta_africana
ENSCANG00000029220	UPF3B	68	72.124	ENSMFAG00000045275	-	94	71.429	Macaca_fascicularis
ENSCANG00000029220	UPF3B	100	100.000	ENSMFAG00000045414	UPF3B	100	100.000	Macaca_fascicularis
ENSCANG00000029220	UPF3B	100	100.000	ENSMMUG00000020222	UPF3B	100	100.000	Macaca_mulatta
ENSCANG00000029220	UPF3B	68	69.912	ENSMMUG00000046682	-	94	65.899	Macaca_mulatta
ENSCANG00000029220	UPF3B	68	71.681	ENSMNEG00000040898	-	94	70.968	Macaca_nemestrina
ENSCANG00000029220	UPF3B	100	100.000	ENSMNEG00000039794	UPF3B	100	100.000	Macaca_nemestrina
ENSCANG00000029220	UPF3B	100	100.000	ENSMLEG00000010999	UPF3B	100	100.000	Mandrillus_leucophaeus
ENSCANG00000029220	UPF3B	85	67.279	ENSMZEG00005007871	upf3b	56	67.647	Maylandia_zebra
ENSCANG00000029220	UPF3B	71	80.978	ENSMGAG00000007728	UPF3B	61	80.978	Meleagris_gallopavo
ENSCANG00000029220	UPF3B	100	88.476	ENSMAUG00000008705	Upf3b	71	88.476	Mesocricetus_auratus
ENSCANG00000029220	UPF3B	100	96.865	ENSMICG00000001743	UPF3B	100	96.865	Microcebus_murinus
ENSCANG00000029220	UPF3B	100	93.309	ENSMOCG00000017893	Upf3b	70	93.309	Microtus_ochrogaster
ENSCANG00000029220	UPF3B	66	63.679	ENSMMOG00000004183	upf3b	61	59.868	Mola_mola
ENSCANG00000029220	UPF3B	70	70.440	ENSMODG00000003159	UPF3A	53	70.440	Monodelphis_domestica
ENSCANG00000029220	UPF3B	83	84.234	ENSMODG00000010232	UPF3B	65	84.234	Monodelphis_domestica
ENSCANG00000029220	UPF3B	85	67.279	ENSMALG00000008042	upf3b	55	67.647	Monopterus_albus
ENSCANG00000029220	UPF3B	100	90.335	MGP_CAROLIEiJ_G0032999	Upf3b	71	90.335	Mus_caroli
ENSCANG00000029220	UPF3B	100	90.706	ENSMUSG00000036572	Upf3b	71	90.706	Mus_musculus
ENSCANG00000029220	UPF3B	100	90.335	MGP_PahariEiJ_G0031543	Upf3b	71	90.335	Mus_pahari
ENSCANG00000029220	UPF3B	100	90.706	MGP_SPRETEiJ_G0034152	Upf3b	71	90.706	Mus_spretus
ENSCANG00000029220	UPF3B	97	97.770	ENSMPUG00000001531	UPF3B	71	97.770	Mustela_putorius_furo
ENSCANG00000029220	UPF3B	100	96.283	ENSMLUG00000010821	UPF3B	72	96.283	Myotis_lucifugus
ENSCANG00000029220	UPF3B	100	89.591	ENSNGAG00000008231	Upf3b	71	89.591	Nannospalax_galili
ENSCANG00000029220	UPF3B	64	62.621	ENSNBRG00000011560	upf3b	95	64.516	Neolamprologus_brichardi
ENSCANG00000029220	UPF3B	68	76.959	ENSNLEG00000027516	-	94	76.442	Nomascus_leucogenys
ENSCANG00000029220	UPF3B	100	99.628	ENSNLEG00000014897	UPF3B	79	99.324	Nomascus_leucogenys
ENSCANG00000029220	UPF3B	68	70.046	ENSODEG00000000596	-	95	69.378	Octodon_degus
ENSCANG00000029220	UPF3B	100	97.026	ENSODEG00000002186	-	74	97.026	Octodon_degus
ENSCANG00000029220	UPF3B	68	73.272	ENSODEG00000006064	-	94	73.077	Octodon_degus
ENSCANG00000029220	UPF3B	53	62.722	ENSODEG00000009176	-	63	65.823	Octodon_degus
ENSCANG00000029220	UPF3B	70	79.386	ENSODEG00000007164	-	90	79.147	Octodon_degus
ENSCANG00000029220	UPF3B	100	69.118	ENSONIG00000002536	upf3b	66	69.118	Oreochromis_niloticus
ENSCANG00000029220	UPF3B	83	75.806	ENSOANG00000002594	-	52	84.713	Ornithorhynchus_anatinus
ENSCANG00000029220	UPF3B	100	97.026	ENSOCUG00000010213	UPF3B	70	97.026	Oryctolagus_cuniculus
ENSCANG00000029220	UPF3B	85	64.964	ENSORLG00000001026	upf3b	56	64.338	Oryzias_latipes
ENSCANG00000029220	UPF3B	90	58.562	ENSORLG00020003758	upf3b	91	57.586	Oryzias_latipes_hni
ENSCANG00000029220	UPF3B	85	64.599	ENSORLG00015012954	upf3b	56	63.971	Oryzias_latipes_hsok
ENSCANG00000029220	UPF3B	50	73.585	ENSOMEG00000014736	upf3b	56	64.338	Oryzias_melastigma
ENSCANG00000029220	UPF3B	96	85.185	ENSOGAG00000033003	-	67	85.185	Otolemur_garnettii
ENSCANG00000029220	UPF3B	100	96.654	ENSOGAG00000004643	-	71	96.654	Otolemur_garnettii
ENSCANG00000029220	UPF3B	100	97.059	ENSOARG00000016051	-	70	97.059	Ovis_aries
ENSCANG00000029220	UPF3B	85	79.167	ENSOARG00000007869	-	69	79.167	Ovis_aries
ENSCANG00000029220	UPF3B	100	100.000	ENSPPAG00000040390	UPF3B	100	100.000	Pan_paniscus
ENSCANG00000029220	UPF3B	100	97.398	ENSPPRG00000023536	UPF3B	71	97.398	Panthera_pardus
ENSCANG00000029220	UPF3B	100	97.398	ENSPTIG00000015264	UPF3B	100	96.541	Panthera_tigris_altaica
ENSCANG00000029220	UPF3B	100	100.000	ENSPTRG00000022228	UPF3B	100	100.000	Pan_troglodytes
ENSCANG00000029220	UPF3B	100	100.000	ENSPANG00000000900	UPF3B	100	100.000	Papio_anubis
ENSCANG00000029220	UPF3B	68	72.444	ENSPANG00000029350	-	93	70.833	Papio_anubis
ENSCANG00000029220	UPF3B	85	67.153	ENSPKIG00000019226	upf3b	74	78.261	Paramormyrops_kingsleyae
ENSCANG00000029220	UPF3B	56	83.240	ENSPSIG00000005833	UPF3B	63	83.240	Pelodiscus_sinensis
ENSCANG00000029220	UPF3B	85	67.153	ENSPMGG00000016067	upf3b	94	67.153	Periophthalmus_magnuspinnatus
ENSCANG00000029220	UPF3B	100	92.565	ENSPEMG00000012352	Upf3b	71	92.565	Peromyscus_maniculatus_bairdii
ENSCANG00000029220	UPF3B	89	47.239	ENSPCIG00000019590	-	66	71.333	Phascolarctos_cinereus
ENSCANG00000029220	UPF3B	89	74.297	ENSPCIG00000028914	UPF3B	60	74.894	Phascolarctos_cinereus
ENSCANG00000029220	UPF3B	88	66.986	ENSPLAG00000005105	upf3b	59	65.125	Poecilia_latipinna
ENSCANG00000029220	UPF3B	88	66.507	ENSPLAG00000019922	upf3b	57	66.300	Poecilia_latipinna
ENSCANG00000029220	UPF3B	54	68.750	ENSPLAG00000011960	upf3a	54	77.419	Poecilia_latipinna
ENSCANG00000029220	UPF3B	88	66.507	ENSPMEG00000023532	upf3b	57	66.300	Poecilia_mexicana
ENSCANG00000029220	UPF3B	100	95.770	ENSPPYG00000020675	-	100	95.770	Pongo_abelii
ENSCANG00000029220	UPF3B	100	95.911	ENSPCAG00000009464	UPF3B	70	95.911	Procavia_capensis
ENSCANG00000029220	UPF3B	100	98.148	ENSPCOG00000021960	UPF3B	100	97.492	Propithecus_coquereli
ENSCANG00000029220	UPF3B	100	87.755	ENSPVAG00000014075	UPF3B	66	87.755	Pteropus_vampyrus
ENSCANG00000029220	UPF3B	85	67.279	ENSPNYG00000009846	upf3b	56	67.647	Pundamilia_nyererei
ENSCANG00000029220	UPF3B	100	63.158	ENSPNAG00000021528	upf3b	96	65.147	Pygocentrus_nattereri
ENSCANG00000029220	UPF3B	100	91.078	ENSRNOG00000039994	Upf3b	71	91.078	Rattus_norvegicus
ENSCANG00000029220	UPF3B	73	99.454	ENSRBIG00000037219	UPF3B	65	99.454	Rhinopithecus_bieti
ENSCANG00000029220	UPF3B	100	100.000	ENSRROG00000041031	UPF3B	100	100.000	Rhinopithecus_roxellana
ENSCANG00000029220	UPF3B	100	98.513	ENSSBOG00000019740	UPF3B	100	98.428	Saimiri_boliviensis_boliviensis
ENSCANG00000029220	UPF3B	81	84.234	ENSSHAG00000008634	UPF3B	59	84.234	Sarcophilus_harrisii
ENSCANG00000029220	UPF3B	69	68.125	ENSSHAG00000009895	UPF3A	54	68.125	Sarcophilus_harrisii
ENSCANG00000029220	UPF3B	100	69.853	ENSSFOG00015005614	upf3b	68	68.750	Scleropages_formosus
ENSCANG00000029220	UPF3B	89	69.338	ENSSMAG00000012913	upf3b	89	69.338	Scophthalmus_maximus
ENSCANG00000029220	UPF3B	50	70.000	ENSSMAG00000003858	upf3a	78	67.241	Scophthalmus_maximus
ENSCANG00000029220	UPF3B	52	70.732	ENSSDUG00000009680	upf3a	57	76.344	Seriola_dumerili
ENSCANG00000029220	UPF3B	66	66.351	ENSSDUG00000005682	upf3b	56	66.544	Seriola_dumerili
ENSCANG00000029220	UPF3B	66	66.825	ENSSLDG00000003130	upf3b	56	66.912	Seriola_lalandi_dorsalis
ENSCANG00000029220	UPF3B	84	95.074	ENSSARG00000004147	UPF3B	66	93.548	Sorex_araneus
ENSCANG00000029220	UPF3B	99	73.188	ENSSPUG00000013082	UPF3B	71	70.290	Sphenodon_punctatus
ENSCANG00000029220	UPF3B	85	68.015	ENSSPAG00000009989	upf3b	56	68.015	Stegastes_partitus
ENSCANG00000029220	UPF3B	52	70.732	ENSSPAG00000007938	upf3a	72	70.701	Stegastes_partitus
ENSCANG00000029220	UPF3B	100	97.770	ENSSSCG00000012617	UPF3B	71	97.770	Sus_scrofa
ENSCANG00000029220	UPF3B	84	82.063	ENSTGUG00000003413	UPF3B	65	82.063	Taeniopygia_guttata
ENSCANG00000029220	UPF3B	100	83.271	ENSTBEG00000003229	UPF3B	70	83.271	Tupaia_belangeri
ENSCANG00000029220	UPF3B	100	92.937	ENSUAMG00000024565	UPF3B	73	92.920	Ursus_americanus
ENSCANG00000029220	UPF3B	89	84.351	ENSUMAG00000002150	UPF3B	70	84.291	Ursus_maritimus
ENSCANG00000029220	UPF3B	77	98.980	ENSVPAG00000009971	UPF3B	64	98.980	Vicugna_pacos
ENSCANG00000029220	UPF3B	100	92.937	ENSVVUG00000011594	UPF3B	97	96.635	Vulpes_vulpes
ENSCANG00000029220	UPF3B	79	80.368	ENSXETG00000007440	upf3b	74	79.532	Xenopus_tropicalis
ENSCANG00000029220	UPF3B	91	65.550	ENSXCOG00000016586	upf3b	97	65.403	Xiphophorus_couchianus
ENSCANG00000029220	UPF3B	84	65.072	ENSXMAG00000013680	upf3b	57	65.201	Xiphophorus_maculatus