EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCANG00000029819 (Gene tree)
Gene ID: 105500356
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Colobus_angolensis_palliatus
Status: putative
Strand: Plus strand
Length: 23345 bases
Position: chrKN985412.1:3030848-3054192
Accession: 105500356
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCANP00000013001	UPF1_Zn_bind	PF09416.10	8.7e-75	1	1
ENSCANP00000013001	ResIII	PF04851.15	3.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCANT00000035913	UPF1-201	3240	XM_011925825	ENSCANP00000013001	1079 (aa)	XP_011781215	A0A2K5I8X7
ENSCANT00000035995	UPF1-202	4791	-	ENSCANP00000013083	373 (aa)	-	A0A2K5I8W4

Gene Model

Click here to download ENSCANG00000029819's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCANG00000029819's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCANG00000029819	UPF1	99	99.252	ENSG00000005007	UPF1	95	99.252	Homo_sapiens
ENSCANG00000029819	UPF1	97	92.330	ENSAPOG00000023773	upf1	95	92.519	Acanthochromis_polyacanthus
ENSCANG00000029819	UPF1	97	93.827	ENSAPOG00000010916	-	95	93.922	Acanthochromis_polyacanthus
ENSCANG00000029819	UPF1	99	98.050	ENSAMEG00000011474	UPF1	96	98.050	Ailuropoda_melanoleuca
ENSCANG00000029819	UPF1	96	94.015	ENSACIG00000010985	-	100	94.112	Amphilophus_citrinellus
ENSCANG00000029819	UPF1	97	92.053	ENSACIG00000019949	upf1	95	92.519	Amphilophus_citrinellus
ENSCANG00000029819	UPF1	97	93.827	ENSAOCG00000006352	-	100	91.426	Amphiprion_ocellaris
ENSCANG00000029819	UPF1	97	91.817	ENSAOCG00000018519	upf1	95	92.502	Amphiprion_ocellaris
ENSCANG00000029819	UPF1	97	91.817	ENSAPEG00000016344	upf1	95	92.502	Amphiprion_percula
ENSCANG00000029819	UPF1	97	93.827	ENSAPEG00000006292	-	100	91.426	Amphiprion_percula
ENSCANG00000029819	UPF1	97	93.827	ENSATEG00000016606	-	95	93.922	Anabas_testudineus
ENSCANG00000029819	UPF1	97	90.926	ENSATEG00000017867	upf1	95	91.862	Anabas_testudineus
ENSCANG00000029819	UPF1	97	98.192	ENSAPLG00000009175	UPF1	99	98.192	Anas_platyrhynchos
ENSCANG00000029819	UPF1	99	96.942	ENSANAG00000024107	UPF1	98	96.942	Aotus_nancymaae
ENSCANG00000029819	UPF1	97	93.726	ENSACLG00000022630	-	95	93.726	Astatotilapia_calliptera
ENSCANG00000029819	UPF1	97	91.864	ENSACLG00000007181	upf1	95	92.330	Astatotilapia_calliptera
ENSCANG00000029819	UPF1	97	94.207	ENSAMXG00000042187	upf1	95	94.777	Astyanax_mexicanus
ENSCANG00000029819	UPF1	99	98.784	ENSBTAG00000020922	UPF1	95	98.784	Bos_taurus
ENSCANG00000029819	UPF1	85	53.055	WBGene00004880	smg-2	94	50.145	Caenorhabditis_elegans
ENSCANG00000029819	UPF1	99	99.252	ENSCJAG00000019627	UPF1	95	99.252	Callithrix_jacchus
ENSCANG00000029819	UPF1	99	98.693	ENSCAFG00000014578	UPF1	95	98.693	Canis_familiaris
ENSCANG00000029819	UPF1	99	97.666	ENSCAFG00020012347	UPF1	95	97.666	Canis_lupus_dingo
ENSCANG00000029819	UPF1	99	98.785	ENSCHIG00000011018	UPF1	95	98.785	Capra_hircus
ENSCANG00000029819	UPF1	99	98.689	ENSTSYG00000008877	UPF1	99	98.689	Carlito_syrichta
ENSCANG00000029819	UPF1	99	96.939	ENSCAPG00000005758	UPF1	97	96.939	Cavia_aperea
ENSCANG00000029819	UPF1	97	98.760	ENSCPOG00000025463	UPF1	94	98.760	Cavia_porcellus
ENSCANG00000029819	UPF1	99	99.252	ENSCCAG00000032175	UPF1	95	99.252	Cebus_capucinus
ENSCANG00000029819	UPF1	99	97.866	ENSCATG00000040306	UPF1	99	97.866	Cercocebus_atys
ENSCANG00000029819	UPF1	99	98.597	ENSCLAG00000004037	UPF1	100	99.620	Chinchilla_lanigera
ENSCANG00000029819	UPF1	99	98.037	ENSCSAG00000005276	UPF1	95	98.037	Chlorocebus_sabaeus
ENSCANG00000029819	UPF1	99	96.549	ENSCPBG00000012513	UPF1	95	96.549	Chrysemys_picta_bellii
ENSCANG00000029819	UPF1	72	82.497	ENSCING00000021399	-	91	82.497	Ciona_intestinalis
ENSCANG00000029819	UPF1	97	73.415	ENSCSAVG00000006533	-	94	73.415	Ciona_savignyi
ENSCANG00000029819	UPF1	99	97.196	ENSCGRG00001021067	Upf1	95	97.196	Cricetulus_griseus_chok1gshd
ENSCANG00000029819	UPF1	99	97.944	ENSCGRG00000013480	Upf1	99	97.944	Cricetulus_griseus_crigri
ENSCANG00000029819	UPF1	97	93.821	ENSCSEG00000016159	-	95	93.821	Cynoglossus_semilaevis
ENSCANG00000029819	UPF1	97	87.226	ENSCSEG00000017239	upf1	94	87.417	Cynoglossus_semilaevis
ENSCANG00000029819	UPF1	97	93.637	ENSCVAG00000010561	upf1	95	93.637	Cyprinodon_variegatus
ENSCANG00000029819	UPF1	97	94.017	ENSDARG00000016302	upf1	95	94.587	Danio_rerio
ENSCANG00000029819	UPF1	98	96.774	ENSDORG00000009984	Upf1	95	96.774	Dipodomys_ordii
ENSCANG00000029819	UPF1	82	73.631	FBgn0030354	Upf1	80	69.650	Drosophila_melanogaster
ENSCANG00000029819	UPF1	52	87.971	ENSEBUG00000010069	upf1	89	88.727	Eptatretus_burgeri
ENSCANG00000029819	UPF1	99	96.942	ENSEASG00005006549	UPF1	96	96.942	Equus_asinus_asinus
ENSCANG00000029819	UPF1	99	96.942	ENSECAG00000010639	UPF1	96	96.942	Equus_caballus
ENSCANG00000029819	UPF1	97	93.012	ENSELUG00000012916	-	95	93.019	Esox_lucius
ENSCANG00000029819	UPF1	97	91.493	ENSELUG00000020917	upf1	95	91.777	Esox_lucius
ENSCANG00000029819	UPF1	99	98.599	ENSFCAG00000009757	UPF1	95	98.599	Felis_catus
ENSCANG00000029819	UPF1	99	96.007	ENSFALG00000009312	UPF1	98	96.007	Ficedula_albicollis
ENSCANG00000029819	UPF1	98	99.525	ENSFDAG00000014816	UPF1	100	99.525	Fukomys_damarensis
ENSCANG00000029819	UPF1	97	89.454	ENSFHEG00000006428	upf1	94	89.454	Fundulus_heteroclitus
ENSCANG00000029819	UPF1	89	93.648	ENSFHEG00000016276	-	96	93.829	Fundulus_heteroclitus
ENSCANG00000029819	UPF1	97	93.447	ENSGMOG00000007541	upf1	95	94.017	Gadus_morhua
ENSCANG00000029819	UPF1	99	96.558	ENSGALG00000003220	UPF1	95	96.558	Gallus_gallus
ENSCANG00000029819	UPF1	65	93.901	ENSGAFG00000015443	-	88	91.621	Gambusia_affinis
ENSCANG00000029819	UPF1	97	93.536	ENSGAFG00000004831	upf1	95	93.536	Gambusia_affinis
ENSCANG00000029819	UPF1	99	96.732	ENSGAGG00000022217	UPF1	96	96.732	Gopherus_agassizii
ENSCANG00000029819	UPF1	98	98.955	ENSGGOG00000002608	UPF1	99	98.955	Gorilla_gorilla
ENSCANG00000029819	UPF1	84	86.207	ENSHBUG00000014694	upf1	90	86.207	Haplochromis_burtoni
ENSCANG00000029819	UPF1	84	100.000	ENSHBUG00000008939	upf1	89	100.000	Haplochromis_burtoni
ENSCANG00000029819	UPF1	99	98.411	ENSHGLG00000010900	UPF1	95	98.411	Heterocephalus_glaber_female
ENSCANG00000029819	UPF1	99	96.539	ENSHGLG00100005904	UPF1	98	96.539	Heterocephalus_glaber_male
ENSCANG00000029819	UPF1	97	92.681	ENSHCOG00000008918	upf1	100	92.823	Hippocampus_comes
ENSCANG00000029819	UPF1	97	94.682	ENSIPUG00000005108	UPF1	95	95.157	Ictalurus_punctatus
ENSCANG00000029819	UPF1	99	98.879	ENSSTOG00000009196	UPF1	95	98.879	Ictidomys_tridecemlineatus
ENSCANG00000029819	UPF1	99	98.131	ENSJJAG00000023151	Upf1	95	98.131	Jaculus_jaculus
ENSCANG00000029819	UPF1	97	93.922	ENSKMAG00000004962	upf1	95	93.922	Kryptolebias_marmoratus
ENSCANG00000029819	UPF1	97	93.637	ENSLBEG00000027848	-	95	93.732	Labrus_bergylta
ENSCANG00000029819	UPF1	97	90.534	ENSLBEG00000014862	upf1	95	91.846	Labrus_bergylta
ENSCANG00000029819	UPF1	65	97.274	ENSLACG00000008482	UPF1	100	97.274	Latimeria_chalumnae
ENSCANG00000029819	UPF1	97	96.293	ENSLOCG00000002072	upf1	95	96.293	Lepisosteus_oculatus
ENSCANG00000029819	UPF1	99	98.410	ENSLAFG00000014963	UPF1	95	98.410	Loxodonta_africana
ENSCANG00000029819	UPF1	99	99.252	ENSMFAG00000037748	UPF1	95	99.252	Macaca_fascicularis
ENSCANG00000029819	UPF1	99	99.252	ENSMMUG00000023286	UPF1	95	99.252	Macaca_mulatta
ENSCANG00000029819	UPF1	99	99.252	ENSMNEG00000000046	UPF1	95	99.252	Macaca_nemestrina
ENSCANG00000029819	UPF1	97	100.000	ENSMLEG00000028404	UPF1	100	100.000	Mandrillus_leucophaeus
ENSCANG00000029819	UPF1	97	90.739	ENSMAMG00000006229	upf1	95	91.862	Mastacembelus_armatus
ENSCANG00000029819	UPF1	97	93.067	ENSMAMG00000006231	-	95	93.637	Mastacembelus_armatus
ENSCANG00000029819	UPF1	97	90.748	ENSMZEG00005003489	upf1	95	92.105	Maylandia_zebra
ENSCANG00000029819	UPF1	97	93.726	ENSMZEG00005016386	-	95	93.726	Maylandia_zebra
ENSCANG00000029819	UPF1	97	97.719	ENSMGAG00000004745	UPF1	100	97.719	Meleagris_gallopavo
ENSCANG00000029819	UPF1	99	97.575	ENSMAUG00000011398	Upf1	97	97.575	Mesocricetus_auratus
ENSCANG00000029819	UPF1	99	97.944	ENSMICG00000001659	UPF1	95	97.944	Microcebus_murinus
ENSCANG00000029819	UPF1	99	97.677	ENSMOCG00000005699	Upf1	96	97.677	Microtus_ochrogaster
ENSCANG00000029819	UPF1	97	91.548	ENSMMOG00000007537	-	99	91.643	Mola_mola
ENSCANG00000029819	UPF1	97	91.985	ENSMMOG00000007881	upf1	94	92.564	Mola_mola
ENSCANG00000029819	UPF1	99	98.039	ENSMODG00000003689	UPF1	95	98.039	Monodelphis_domestica
ENSCANG00000029819	UPF1	97	92.533	ENSMALG00000018100	-	95	92.628	Monopterus_albus
ENSCANG00000029819	UPF1	97	91.817	ENSMALG00000000144	upf1	95	92.198	Monopterus_albus
ENSCANG00000029819	UPF1	99	98.131	MGP_CAROLIEiJ_G0031142	Upf1	95	98.131	Mus_caroli
ENSCANG00000029819	UPF1	99	98.131	ENSMUSG00000058301	Upf1	95	98.131	Mus_musculus
ENSCANG00000029819	UPF1	99	98.131	MGP_PahariEiJ_G0021607	Upf1	95	98.131	Mus_pahari
ENSCANG00000029819	UPF1	99	98.131	MGP_SPRETEiJ_G0032260	Upf1	95	98.131	Mus_spretus
ENSCANG00000029819	UPF1	99	97.666	ENSMPUG00000015516	UPF1	95	97.666	Mustela_putorius_furo
ENSCANG00000029819	UPF1	99	97.300	ENSMLUG00000012122	UPF1	95	97.300	Myotis_lucifugus
ENSCANG00000029819	UPF1	99	98.131	ENSNGAG00000024107	Upf1	95	98.131	Nannospalax_galili
ENSCANG00000029819	UPF1	96	92.885	ENSNBRG00000022069	-	100	92.885	Neolamprologus_brichardi
ENSCANG00000029819	UPF1	97	90.066	ENSNBRG00000000670	upf1	95	90.530	Neolamprologus_brichardi
ENSCANG00000029819	UPF1	97	94.202	ENSNLEG00000006062	UPF1	100	94.202	Nomascus_leucogenys
ENSCANG00000029819	UPF1	80	94.314	ENSMEUG00000014146	-	77	94.314	Notamacropus_eugenii
ENSCANG00000029819	UPF1	97	90.589	ENSOPRG00000014018	UPF1	100	90.589	Ochotona_princeps
ENSCANG00000029819	UPF1	99	98.689	ENSODEG00000012426	UPF1	96	98.689	Octodon_degus
ENSCANG00000029819	UPF1	97	91.028	ENSONIG00000010452	upf1	95	92.387	Oreochromis_niloticus
ENSCANG00000029819	UPF1	97	93.821	ENSONIG00000012729	-	95	93.821	Oreochromis_niloticus
ENSCANG00000029819	UPF1	99	97.127	ENSOANG00000004568	UPF1	96	97.127	Ornithorhynchus_anatinus
ENSCANG00000029819	UPF1	97	93.542	ENSORLG00000008453	upf1	95	93.542	Oryzias_latipes
ENSCANG00000029819	UPF1	97	93.542	ENSORLG00020014758	upf1	95	93.542	Oryzias_latipes_hni
ENSCANG00000029819	UPF1	97	93.542	ENSORLG00015010165	upf1	100	89.692	Oryzias_latipes_hsok
ENSCANG00000029819	UPF1	97	93.637	ENSOMEG00000003665	upf1	95	93.637	Oryzias_melastigma
ENSCANG00000029819	UPF1	99	98.131	ENSOGAG00000012866	UPF1	95	98.131	Otolemur_garnettii
ENSCANG00000029819	UPF1	94	99.408	ENSOARG00000010739	UPF1	93	99.408	Ovis_aries
ENSCANG00000029819	UPF1	99	99.814	ENSPPAG00000043884	UPF1	98	99.814	Pan_paniscus
ENSCANG00000029819	UPF1	99	98.599	ENSPPRG00000023470	UPF1	95	98.599	Panthera_pardus
ENSCANG00000029819	UPF1	97	96.575	ENSPTIG00000010159	UPF1	99	96.575	Panthera_tigris_altaica
ENSCANG00000029819	UPF1	99	99.252	ENSPTRG00000010721	UPF1	95	99.252	Pan_troglodytes
ENSCANG00000029819	UPF1	99	99.252	ENSPANG00000008847	UPF1	95	99.252	Papio_anubis
ENSCANG00000029819	UPF1	91	93.529	ENSPKIG00000006069	upf1	94	93.529	Paramormyrops_kingsleyae
ENSCANG00000029819	UPF1	71	97.908	ENSPSIG00000009491	UPF1	100	97.908	Pelodiscus_sinensis
ENSCANG00000029819	UPF1	97	90.427	ENSPMGG00000017327	upf1	95	90.634	Periophthalmus_magnuspinnatus
ENSCANG00000029819	UPF1	99	98.224	ENSPEMG00000001085	Upf1	95	98.224	Peromyscus_maniculatus_bairdii
ENSCANG00000029819	UPF1	99	88.131	ENSPMAG00000001206	upf1	94	89.068	Petromyzon_marinus
ENSCANG00000029819	UPF1	99	97.012	ENSPCIG00000006156	UPF1	95	97.012	Phascolarctos_cinereus
ENSCANG00000029819	UPF1	97	90.584	ENSPLAG00000018155	-	95	90.584	Poecilia_latipinna
ENSCANG00000029819	UPF1	97	93.631	ENSPLAG00000016232	-	95	93.631	Poecilia_latipinna
ENSCANG00000029819	UPF1	97	93.726	ENSPMEG00000016319	-	95	93.726	Poecilia_mexicana
ENSCANG00000029819	UPF1	97	91.176	ENSPMEG00000011443	-	95	91.176	Poecilia_mexicana
ENSCANG00000029819	UPF1	97	91.149	ENSPREG00000009940	upf1	94	91.149	Poecilia_reticulata
ENSCANG00000029819	UPF1	97	93.441	ENSPREG00000011247	-	95	93.441	Poecilia_reticulata
ENSCANG00000029819	UPF1	99	94.019	ENSPPYG00000009752	UPF1	95	94.019	Pongo_abelii
ENSCANG00000029819	UPF1	68	100.000	ENSPCAG00000012962	UPF1	65	100.000	Procavia_capensis
ENSCANG00000029819	UPF1	99	98.692	ENSPCOG00000023813	UPF1	96	98.417	Propithecus_coquereli
ENSCANG00000029819	UPF1	66	100.000	ENSPVAG00000003183	UPF1	64	100.000	Pteropus_vampyrus
ENSCANG00000029819	UPF1	97	90.748	ENSPNYG00000003694	upf1	95	92.105	Pundamilia_nyererei
ENSCANG00000029819	UPF1	97	93.726	ENSPNYG00000016731	-	95	93.726	Pundamilia_nyererei
ENSCANG00000029819	UPF1	97	94.207	ENSPNAG00000025614	upf1	95	94.777	Pygocentrus_nattereri
ENSCANG00000029819	UPF1	99	98.131	ENSRNOG00000020134	Upf1	95	98.131	Rattus_norvegicus
ENSCANG00000029819	UPF1	100	97.590	ENSRBIG00000013894	UPF1	98	98.593	Rhinopithecus_bieti
ENSCANG00000029819	UPF1	100	99.907	ENSRROG00000040935	UPF1	100	99.907	Rhinopithecus_roxellana
ENSCANG00000029819	UPF1	76	56.348	YMR080C	NAM7	84	56.348	Saccharomyces_cerevisiae
ENSCANG00000029819	UPF1	99	98.329	ENSSBOG00000023632	UPF1	99	98.329	Saimiri_boliviensis_boliviensis
ENSCANG00000029819	UPF1	97	98.860	ENSSHAG00000010499	UPF1	100	98.860	Sarcophilus_harrisii
ENSCANG00000029819	UPF1	97	96.293	ENSSFOG00015021095	upf1	99	96.198	Scleropages_formosus
ENSCANG00000029819	UPF1	97	93.827	ENSSMAG00000021018	-	95	93.922	Scophthalmus_maximus
ENSCANG00000029819	UPF1	97	90.159	ENSSMAG00000005055	upf1	95	91.105	Scophthalmus_maximus
ENSCANG00000029819	UPF1	97	94.017	ENSSDUG00000009629	-	95	94.112	Seriola_dumerili
ENSCANG00000029819	UPF1	97	90.926	ENSSDUG00000013320	upf1	95	92.049	Seriola_dumerili
ENSCANG00000029819	UPF1	97	94.017	ENSSLDG00000006878	-	95	94.112	Seriola_lalandi_dorsalis
ENSCANG00000029819	UPF1	97	91.785	ENSSLDG00000020868	upf1	95	92.366	Seriola_lalandi_dorsalis
ENSCANG00000029819	UPF1	99	96.632	ENSSPUG00000010538	UPF1	95	96.632	Sphenodon_punctatus
ENSCANG00000029819	UPF1	97	94.011	ENSSPAG00000011521	-	95	94.011	Stegastes_partitus
ENSCANG00000029819	UPF1	97	90.114	ENSSPAG00000000003	upf1	95	90.142	Stegastes_partitus
ENSCANG00000029819	UPF1	99	98.690	ENSSSCG00000039301	UPF1	99	98.668	Sus_scrofa
ENSCANG00000029819	UPF1	80	91.425	ENSTGUG00000001057	UPF1	90	96.700	Taeniopygia_guttata
ENSCANG00000029819	UPF1	97	92.776	ENSTRUG00000005131	-	95	92.871	Takifugu_rubripes
ENSCANG00000029819	UPF1	97	91.912	ENSTRUG00000000150	upf1	95	91.912	Takifugu_rubripes
ENSCANG00000029819	UPF1	99	93.838	ENSTTRG00000011544	UPF1	93	94.862	Tursiops_truncatus
ENSCANG00000029819	UPF1	99	97.572	ENSUAMG00000007093	UPF1	95	97.572	Ursus_americanus
ENSCANG00000029819	UPF1	99	98.688	ENSUMAG00000006652	UPF1	99	98.769	Ursus_maritimus
ENSCANG00000029819	UPF1	99	97.666	ENSVVUG00000007797	UPF1	95	97.666	Vulpes_vulpes
ENSCANG00000029819	UPF1	97	83.602	ENSXETG00000013602	upf1	93	83.602	Xenopus_tropicalis
ENSCANG00000029819	UPF1	94	90.837	ENSXCOG00000015275	-	91	90.837	Xiphophorus_couchianus
ENSCANG00000029819	UPF1	96	93.858	ENSXCOG00000005764	-	100	93.858	Xiphophorus_couchianus
ENSCANG00000029819	UPF1	97	91.065	ENSXMAG00000001703	-	95	91.065	Xiphophorus_maculatus
ENSCANG00000029819	UPF1	97	93.536	ENSXMAG00000002540	-	95	93.536	Xiphophorus_maculatus