EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCANG00000031764 (Gene tree)
Gene ID: 105521762
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Colobus_angolensis_palliatus
Status: putative
Strand: Minus strand
Length: 262067 bases
Position: chrKN979497.1:2058269-2320335
Accession: 105521762
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCANP00000016741	EST1	PF10374.9	4.7e-15	1	1
ENSCANP00000016741	EST1_DNA_bind	PF10373.9	2.7e-59	1	1
ENSCANP00000016754	EST1_DNA_bind	PF10373.9	4.6e-18	1	1
ENSCANP00000016754	PIN_4	PF13638.6	1.3e-21	1	1
ENSCANP00000016741	PIN_4	PF13638.6	6.5e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCANT00000039682	SMG6-201	6173	XM_011956067	ENSCANP00000016741	1389 (aa)	XP_011811457	A0A2K5IJM7
ENSCANT00000039695	SMG6-202	3271	XM_011956075	ENSCANP00000016754	511 (aa)	XP_011811465	A0A2K5IJB0

Gene Model

Click here to download ENSCANG00000031764's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCANG00000031764's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCANG00000031764	SMG6	100	99.217	ENSG00000070366	SMG6	100	99.217	Homo_sapiens
ENSCANG00000031764	SMG6	100	58.501	ENSAPOG00000019448	smg6	74	54.758	Acanthochromis_polyacanthus
ENSCANG00000031764	SMG6	100	96.869	ENSAMEG00000007632	SMG6	98	93.089	Ailuropoda_melanoleuca
ENSCANG00000031764	SMG6	100	60.714	ENSACIG00000012997	smg6	97	49.868	Amphilophus_citrinellus
ENSCANG00000031764	SMG6	100	58.135	ENSAOCG00000002630	smg6	74	54.922	Amphiprion_ocellaris
ENSCANG00000031764	SMG6	100	58.135	ENSAPEG00000019101	smg6	74	55.078	Amphiprion_percula
ENSCANG00000031764	SMG6	100	59.049	ENSATEG00000006483	smg6	90	48.540	Anabas_testudineus
ENSCANG00000031764	SMG6	86	58.576	ENSACAG00000011783	SMG6	97	59.595	Anolis_carolinensis
ENSCANG00000031764	SMG6	100	98.239	ENSANAG00000035760	SMG6	98	95.896	Aotus_nancymaae
ENSCANG00000031764	SMG6	100	59.007	ENSACLG00000005288	smg6	86	53.218	Astatotilapia_calliptera
ENSCANG00000031764	SMG6	100	62.786	ENSAMXG00000017326	smg6	98	51.262	Astyanax_mexicanus
ENSCANG00000031764	SMG6	100	96.869	ENSBTAG00000000267	SMG6	98	92.852	Bos_taurus
ENSCANG00000031764	SMG6	100	98.043	ENSCJAG00000001820	SMG6	98	95.320	Callithrix_jacchus
ENSCANG00000031764	SMG6	100	96.673	ENSCAFG00000019260	SMG6	98	93.285	Canis_familiaris
ENSCANG00000031764	SMG6	100	96.673	ENSCAFG00020009770	SMG6	98	93.285	Canis_lupus_dingo
ENSCANG00000031764	SMG6	100	97.260	ENSCHIG00000021998	SMG6	98	92.635	Capra_hircus
ENSCANG00000031764	SMG6	100	97.065	ENSTSYG00000003406	SMG6	100	97.065	Carlito_syrichta
ENSCANG00000031764	SMG6	99	77.122	ENSCAPG00000016197	SMG6	99	82.670	Cavia_aperea
ENSCANG00000031764	SMG6	100	96.282	ENSCPOG00000014878	SMG6	97	92.544	Cavia_porcellus
ENSCANG00000031764	SMG6	100	98.239	ENSCCAG00000035801	SMG6	98	95.752	Cebus_capucinus
ENSCANG00000031764	SMG6	100	99.413	ENSCATG00000031956	SMG6	98	98.488	Cercocebus_atys
ENSCANG00000031764	SMG6	100	96.673	ENSCLAG00000006748	SMG6	100	92.219	Chinchilla_lanigera
ENSCANG00000031764	SMG6	100	99.804	ENSCSAG00000013800	SMG6	98	98.848	Chlorocebus_sabaeus
ENSCANG00000031764	SMG6	53	98.507	ENSCHOG00000005024	-	66	98.507	Choloepus_hoffmanni
ENSCANG00000031764	SMG6	100	81.996	ENSCPBG00000020369	SMG6	98	72.289	Chrysemys_picta_bellii
ENSCANG00000031764	SMG6	99	34.749	ENSCING00000010099	-	99	35.182	Ciona_intestinalis
ENSCANG00000031764	SMG6	54	37.456	ENSCSAVG00000007638	-	99	37.943	Ciona_savignyi
ENSCANG00000031764	SMG6	54	87.367	ENSCGRG00001019595	Smg6	94	87.367	Cricetulus_griseus_chok1gshd
ENSCANG00000031764	SMG6	99	84.726	ENSCGRG00000007782	Smg6	100	84.870	Cricetulus_griseus_crigri
ENSCANG00000031764	SMG6	100	61.017	ENSCSEG00000012757	smg6	82	53.283	Cynoglossus_semilaevis
ENSCANG00000031764	SMG6	100	57.895	ENSCVAG00000012789	smg6	74	53.580	Cyprinodon_variegatus
ENSCANG00000031764	SMG6	100	61.654	ENSDARG00000100481	smg6	77	55.713	Danio_rerio
ENSCANG00000031764	SMG6	100	96.673	ENSDNOG00000048283	SMG6	98	92.585	Dasypus_novemcinctus
ENSCANG00000031764	SMG6	100	97.652	ENSDORG00000016614	Smg6	94	97.297	Dipodomys_ordii
ENSCANG00000031764	SMG6	93	100.000	ENSETEG00000016790	SMG6	91	100.000	Echinops_telfairi
ENSCANG00000031764	SMG6	99	55.493	ENSEBUG00000005059	smg6	66	49.565	Eptatretus_burgeri
ENSCANG00000031764	SMG6	99	97.446	ENSEASG00005009318	SMG6	97	94.071	Equus_asinus_asinus
ENSCANG00000031764	SMG6	99	97.250	ENSECAG00000006519	SMG6	97	93.782	Equus_caballus
ENSCANG00000031764	SMG6	99	84.902	ENSEEUG00000003493	SMG6	98	81.831	Erinaceus_europaeus
ENSCANG00000031764	SMG6	100	62.030	ENSELUG00000005934	smg6	69	55.318	Esox_lucius
ENSCANG00000031764	SMG6	100	97.260	ENSFCAG00000028817	SMG6	98	94.152	Felis_catus
ENSCANG00000031764	SMG6	100	83.170	ENSFALG00000006538	SMG6	100	71.673	Ficedula_albicollis
ENSCANG00000031764	SMG6	100	96.477	ENSFDAG00000015106	SMG6	98	91.865	Fukomys_damarensis
ENSCANG00000031764	SMG6	100	56.673	ENSFHEG00000013282	smg6	75	53.271	Fundulus_heteroclitus
ENSCANG00000031764	SMG6	100	52.852	ENSGMOG00000019077	smg6	68	69.159	Gadus_morhua
ENSCANG00000031764	SMG6	100	83.203	ENSGALG00000003108	SMG6	96	71.824	Gallus_gallus
ENSCANG00000031764	SMG6	100	57.664	ENSGAFG00000000379	smg6	74	54.183	Gambusia_affinis
ENSCANG00000031764	SMG6	100	60.038	ENSGACG00000020521	smg6	100	53.614	Gasterosteus_aculeatus
ENSCANG00000031764	SMG6	100	82.387	ENSGAGG00000025617	SMG6	100	71.844	Gopherus_agassizii
ENSCANG00000031764	SMG6	100	99.413	ENSGGOG00000017156	SMG6	98	98.200	Gorilla_gorilla
ENSCANG00000031764	SMG6	100	59.007	ENSHBUG00000021311	smg6	80	53.299	Haplochromis_burtoni
ENSCANG00000031764	SMG6	100	96.673	ENSHGLG00000012882	SMG6	98	91.733	Heterocephalus_glaber_female
ENSCANG00000031764	SMG6	100	96.673	ENSHGLG00100017815	SMG6	98	91.804	Heterocephalus_glaber_male
ENSCANG00000031764	SMG6	100	59.510	ENSHCOG00000008761	smg6	83	58.762	Hippocampus_comes
ENSCANG00000031764	SMG6	100	62.239	ENSIPUG00000012493	smg6	75	54.503	Ictalurus_punctatus
ENSCANG00000031764	SMG6	100	97.847	ENSSTOG00000028127	SMG6	95	96.875	Ictidomys_tridecemlineatus
ENSCANG00000031764	SMG6	78	88.268	ENSJJAG00000015367	Smg6	93	86.299	Jaculus_jaculus
ENSCANG00000031764	SMG6	100	59.636	ENSKMAG00000000279	smg6	91	48.801	Kryptolebias_marmoratus
ENSCANG00000031764	SMG6	100	56.752	ENSLBEG00000002184	smg6	76	53.104	Labrus_bergylta
ENSCANG00000031764	SMG6	57	59.024	ENSLACG00000000806	-	98	59.024	Latimeria_chalumnae
ENSCANG00000031764	SMG6	91	80.215	ENSLACG00000003276	SMG6	100	80.215	Latimeria_chalumnae
ENSCANG00000031764	SMG6	100	68.208	ENSLOCG00000006448	smg6	100	55.024	Lepisosteus_oculatus
ENSCANG00000031764	SMG6	100	96.869	ENSLAFG00000001261	SMG6	98	92.585	Loxodonta_africana
ENSCANG00000031764	SMG6	100	100.000	ENSMFAG00000003394	SMG6	98	98.920	Macaca_fascicularis
ENSCANG00000031764	SMG6	100	100.000	ENSMMUG00000023161	SMG6	98	98.848	Macaca_mulatta
ENSCANG00000031764	SMG6	100	100.000	ENSMNEG00000044592	SMG6	98	93.683	Macaca_nemestrina
ENSCANG00000031764	SMG6	100	100.000	ENSMLEG00000029353	SMG6	99	96.395	Mandrillus_leucophaeus
ENSCANG00000031764	SMG6	100	59.528	ENSMAMG00000020119	smg6	97	49.611	Mastacembelus_armatus
ENSCANG00000031764	SMG6	100	59.007	ENSMZEG00005024736	smg6	80	53.377	Maylandia_zebra
ENSCANG00000031764	SMG6	73	66.795	ENSMGAG00000005401	-	97	66.795	Meleagris_gallopavo
ENSCANG00000031764	SMG6	72	85.014	ENSMGAG00000017200	-	100	85.014	Meleagris_gallopavo
ENSCANG00000031764	SMG6	100	97.652	ENSMICG00000012913	SMG6	98	95.032	Microcebus_murinus
ENSCANG00000031764	SMG6	100	60.837	ENSMMOG00000010883	smg6	90	51.695	Mola_mola
ENSCANG00000031764	SMG6	87	51.931	ENSMODG00000024395	-	98	52.361	Monodelphis_domestica
ENSCANG00000031764	SMG6	100	95.108	ENSMODG00000010622	SMG6	98	85.848	Monodelphis_domestica
ENSCANG00000031764	SMG6	99	41.683	ENSMODG00000024410	-	99	41.683	Monodelphis_domestica
ENSCANG00000031764	SMG6	99	41.683	ENSMODG00000024463	-	99	42.074	Monodelphis_domestica
ENSCANG00000031764	SMG6	99	41.487	ENSMODG00000024460	-	99	41.879	Monodelphis_domestica
ENSCANG00000031764	SMG6	100	58.029	ENSMALG00000001106	smg6	73	54.969	Monopterus_albus
ENSCANG00000031764	SMG6	100	97.260	MGP_CAROLIEiJ_G0016729	Smg6	95	94.690	Mus_caroli
ENSCANG00000031764	SMG6	100	97.260	ENSMUSG00000038290	Smg6	95	94.690	Mus_musculus
ENSCANG00000031764	SMG6	100	97.065	MGP_PahariEiJ_G0017866	Smg6	95	94.690	Mus_pahari
ENSCANG00000031764	SMG6	100	97.260	MGP_SPRETEiJ_G0017572	Smg6	96	93.860	Mus_spretus
ENSCANG00000031764	SMG6	100	96.477	ENSMPUG00000013046	SMG6	98	93.213	Mustela_putorius_furo
ENSCANG00000031764	SMG6	100	97.260	ENSMLUG00000005739	SMG6	98	93.017	Myotis_lucifugus
ENSCANG00000031764	SMG6	100	95.695	ENSNGAG00000007287	Smg6	100	90.497	Nannospalax_galili
ENSCANG00000031764	SMG6	100	58.955	ENSNBRG00000009511	smg6	87	52.941	Neolamprologus_brichardi
ENSCANG00000031764	SMG6	100	99.413	ENSNLEG00000017171	SMG6	100	99.413	Nomascus_leucogenys
ENSCANG00000031764	SMG6	100	94.521	ENSMEUG00000015804	SMG6	100	82.328	Notamacropus_eugenii
ENSCANG00000031764	SMG6	92	83.761	ENSOPRG00000000579	SMG6	85	97.368	Ochotona_princeps
ENSCANG00000031764	SMG6	100	96.289	ENSODEG00000008038	SMG6	98	85.047	Octodon_degus
ENSCANG00000031764	SMG6	100	59.191	ENSONIG00000005594	smg6	97	52.476	Oreochromis_niloticus
ENSCANG00000031764	SMG6	59	84.333	ENSOANG00000030166	-	90	84.333	Ornithorhynchus_anatinus
ENSCANG00000031764	SMG6	100	97.070	ENSOCUG00000013018	SMG6	98	92.955	Oryctolagus_cuniculus
ENSCANG00000031764	SMG6	100	57.455	ENSORLG00000003317	smg6	74	54.631	Oryzias_latipes
ENSCANG00000031764	SMG6	100	57.587	ENSORLG00020015343	smg6	74	54.245	Oryzias_latipes_hni
ENSCANG00000031764	SMG6	100	57.091	ENSORLG00015020454	smg6	74	54.510	Oryzias_latipes_hsok
ENSCANG00000031764	SMG6	100	57.040	ENSOMEG00000010838	smg6	75	53.980	Oryzias_melastigma
ENSCANG00000031764	SMG6	100	97.260	ENSOGAG00000004483	SMG6	98	94.388	Otolemur_garnettii
ENSCANG00000031764	SMG6	100	97.065	ENSOARG00000015076	SMG6	100	92.491	Ovis_aries
ENSCANG00000031764	SMG6	100	99.217	ENSPPAG00000043296	SMG6	98	97.912	Pan_paniscus
ENSCANG00000031764	SMG6	100	97.260	ENSPPRG00000014581	SMG6	98	94.296	Panthera_pardus
ENSCANG00000031764	SMG6	100	97.260	ENSPTIG00000008925	SMG6	100	97.260	Panthera_tigris_altaica
ENSCANG00000031764	SMG6	100	99.217	ENSPTRG00000008544	SMG6	100	99.217	Pan_troglodytes
ENSCANG00000031764	SMG6	100	100.000	ENSPANG00000024588	SMG6	98	98.776	Papio_anubis
ENSCANG00000031764	SMG6	90	70.367	ENSPSIG00000006660	SMG6	96	70.446	Pelodiscus_sinensis
ENSCANG00000031764	SMG6	100	60.000	ENSPMGG00000000844	smg6	89	60.870	Periophthalmus_magnuspinnatus
ENSCANG00000031764	SMG6	100	97.065	ENSPEMG00000020707	Smg6	97	93.805	Peromyscus_maniculatus_bairdii
ENSCANG00000031764	SMG6	100	59.963	ENSPFOG00000012035	smg6	97	51.755	Poecilia_formosa
ENSCANG00000031764	SMG6	100	57.664	ENSPLAG00000017660	smg6	91	48.060	Poecilia_latipinna
ENSCANG00000031764	SMG6	100	57.505	ENSPMEG00000000258	smg6	91	48.189	Poecilia_mexicana
ENSCANG00000031764	SMG6	100	57.664	ENSPREG00000010066	smg6	74	54.396	Poecilia_reticulata
ENSCANG00000031764	SMG6	100	92.241	ENSPPYG00000007790	SMG6	98	92.241	Pongo_abelii
ENSCANG00000031764	SMG6	100	88.049	ENSPCAG00000000552	SMG6	98	88.049	Procavia_capensis
ENSCANG00000031764	SMG6	100	97.652	ENSPCOG00000020925	SMG6	98	94.672	Propithecus_coquereli
ENSCANG00000031764	SMG6	100	96.673	ENSPVAG00000002159	SMG6	84	89.992	Pteropus_vampyrus
ENSCANG00000031764	SMG6	100	61.686	ENSPNYG00000024151	smg6	86	55.198	Pundamilia_nyererei
ENSCANG00000031764	SMG6	100	62.942	ENSPNAG00000015480	smg6	87	63.102	Pygocentrus_nattereri
ENSCANG00000031764	SMG6	100	97.065	ENSRNOG00000003041	Smg6	96	95.308	Rattus_norvegicus
ENSCANG00000031764	SMG6	100	99.609	ENSRBIG00000024746	SMG6	98	98.992	Rhinopithecus_bieti
ENSCANG00000031764	SMG6	100	99.609	ENSRROG00000030423	SMG6	100	99.609	Rhinopithecus_roxellana
ENSCANG00000031764	SMG6	100	98.239	ENSSBOG00000022518	SMG6	98	94.096	Saimiri_boliviensis_boliviensis
ENSCANG00000031764	SMG6	97	40.637	ENSSHAG00000000380	-	99	39.802	Sarcophilus_harrisii
ENSCANG00000031764	SMG6	100	93.933	ENSSHAG00000010045	SMG6	98	85.284	Sarcophilus_harrisii
ENSCANG00000031764	SMG6	100	63.364	ENSSFOG00015005436	smg6	73	54.744	Scleropages_formosus
ENSCANG00000031764	SMG6	100	57.713	ENSSMAG00000019777	smg6	73	54.793	Scophthalmus_maximus
ENSCANG00000031764	SMG6	100	58.470	ENSSDUG00000016412	smg6	79	52.723	Seriola_dumerili
ENSCANG00000031764	SMG6	91	56.461	ENSSLDG00000020747	smg6	83	51.690	Seriola_lalandi_dorsalis
ENSCANG00000031764	SMG6	100	81.748	ENSSPUG00000007152	SMG6	98	70.706	Sphenodon_punctatus
ENSCANG00000031764	SMG6	100	58.425	ENSSPAG00000015633	smg6	74	54.631	Stegastes_partitus
ENSCANG00000031764	SMG6	100	96.869	ENSSSCG00000017826	SMG6	99	92.249	Sus_scrofa
ENSCANG00000031764	SMG6	100	83.953	ENSTGUG00000005836	SMG6	98	72.258	Taeniopygia_guttata
ENSCANG00000031764	SMG6	100	59.023	ENSTRUG00000000358	smg6	95	49.259	Takifugu_rubripes
ENSCANG00000031764	SMG6	100	60.223	ENSTNIG00000016164	smg6	98	50.506	Tetraodon_nigroviridis
ENSCANG00000031764	SMG6	100	89.057	ENSTBEG00000011424	SMG6	98	89.057	Tupaia_belangeri
ENSCANG00000031764	SMG6	100	89.628	ENSTTRG00000001175	SMG6	89	91.364	Tursiops_truncatus
ENSCANG00000031764	SMG6	100	96.498	ENSUAMG00000025152	SMG6	100	93.372	Ursus_americanus
ENSCANG00000031764	SMG6	100	97.065	ENSUMAG00000009306	SMG6	100	93.718	Ursus_maritimus
ENSCANG00000031764	SMG6	84	92.593	ENSVPAG00000000225	SMG6	85	92.593	Vicugna_pacos
ENSCANG00000031764	SMG6	100	96.673	ENSVVUG00000021727	SMG6	98	93.141	Vulpes_vulpes
ENSCANG00000031764	SMG6	100	68.859	ENSXETG00000023799	SMG6	99	59.068	Xenopus_tropicalis
ENSCANG00000031764	SMG6	100	60.612	ENSXCOG00000009867	smg6	74	54.980	Xiphophorus_couchianus
ENSCANG00000031764	SMG6	100	57.847	ENSXMAG00000010321	smg6	74	54.261	Xiphophorus_maculatus