EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCANG00000036916 (Gene tree)
Gene ID: 105513439
Gene Symbol: CHD1
Alias: -
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Colobus_angolensis_palliatus
Status: putative
Strand: Minus strand
Length: 72027 bases
Position: chrKN980829.1:17706846-17778872
Accession: 105513439
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCANP00000027357	ResIII	PF04851.15	2.9e-07	1	1
ENSCANP00000027330	ResIII	PF04851.15	2.9e-07	1	1
ENSCANP00000027318	ResIII	PF04851.15	2.9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCANT00000050336	CHD1-201	5040	XM_011944302	ENSCANP00000027318	1679 (aa)	XP_011799692	A0A2K5JEL7
ENSCANT00000050348	CHD1-202	5007	-	ENSCANP00000027330	1668 (aa)	-	A0A2K5JEV1
ENSCANT00000050375	CHD1-203	4992	-	ENSCANP00000027357	1663 (aa)	-	A0A2K5JET9

Gene Model

Click here to download ENSCANG00000036916's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCANG00000036916's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCANG00000036916	CHD1	99	54.098	ENSCANG00000038126	-	91	58.448

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCANG00000036916	CHD1	100	97.487	ENSG00000153922	CHD1	100	97.487	Homo_sapiens
ENSCANG00000036916	CHD1	67	79.654	ENSAPOG00000005764	chd1	97	79.670	Acanthochromis_polyacanthus
ENSCANG00000036916	CHD1	89	74.592	ENSAOCG00000023105	chd1	92	76.420	Amphiprion_ocellaris
ENSCANG00000036916	CHD1	89	75.849	ENSAPEG00000013544	chd1	92	77.637	Amphiprion_percula
ENSCANG00000036916	CHD1	90	75.417	ENSATEG00000010676	chd1	92	75.884	Anabas_testudineus
ENSCANG00000036916	CHD1	71	80.181	ENSAMXG00000010843	chd1	91	81.161	Astyanax_mexicanus
ENSCANG00000036916	CHD1	100	97.839	ENSCATG00000032035	CHD1	100	97.839	Cercocebus_atys
ENSCANG00000036916	CHD1	100	97.897	ENSCSAG00000015339	CHD1	100	97.897	Chlorocebus_sabaeus
ENSCANG00000036916	CHD1	54	84.790	ENSCPBG00000015831	CHD1	99	81.079	Chrysemys_picta_bellii
ENSCANG00000036916	CHD1	100	93.462	ENSCGRG00001023943	Chd1	100	93.462	Cricetulus_griseus_chok1gshd
ENSCANG00000036916	CHD1	100	93.462	ENSCGRG00000008652	Chd1	100	93.462	Cricetulus_griseus_crigri
ENSCANG00000036916	CHD1	89	73.368	ENSCSEG00000009553	chd1	92	75.285	Cynoglossus_semilaevis
ENSCANG00000036916	CHD1	92	86.954	ENSEASG00005016110	CHD1	99	95.490	Equus_asinus_asinus
ENSCANG00000036916	CHD1	89	75.775	ENSELUG00000017677	chd1	93	75.985	Esox_lucius
ENSCANG00000036916	CHD1	72	78.321	ENSFHEG00000021164	chd1	87	80.320	Fundulus_heteroclitus
ENSCANG00000036916	CHD1	96	75.251	ENSGMOG00000001537	chd1	96	65.533	Gadus_morhua
ENSCANG00000036916	CHD1	92	87.317	ENSGALG00000031327	-	96	87.699	Gallus_gallus
ENSCANG00000036916	CHD1	83	76.248	ENSGAFG00000019880	chd1	92	77.743	Gambusia_affinis
ENSCANG00000036916	CHD1	100	93.834	ENSGGOG00000011463	CHD1	100	93.834	Gorilla_gorilla
ENSCANG00000036916	CHD1	89	76.243	ENSHCOG00000014222	chd1	91	77.733	Hippocampus_comes
ENSCANG00000036916	CHD1	87	79.303	ENSIPUG00000001369	chd1	92	79.102	Ictalurus_punctatus
ENSCANG00000036916	CHD1	62	92.150	ENSLAFG00000023183	CHD1	99	92.150	Loxodonta_africana
ENSCANG00000036916	CHD1	100	97.839	ENSMFAG00000031226	CHD1	100	97.839	Macaca_fascicularis
ENSCANG00000036916	CHD1	83	97.183	ENSMMUG00000014090	CHD1	99	97.183	Macaca_mulatta
ENSCANG00000036916	CHD1	100	97.818	ENSMNEG00000045073	CHD1	100	97.818	Macaca_nemestrina
ENSCANG00000036916	CHD1	100	93.868	ENSMLEG00000041096	CHD1	100	94.281	Mandrillus_leucophaeus
ENSCANG00000036916	CHD1	72	77.742	ENSMZEG00005010957	chd1	89	80.792	Maylandia_zebra
ENSCANG00000036916	CHD1	100	90.835	ENSMOCG00000019121	Chd1	100	90.952	Microtus_ochrogaster
ENSCANG00000036916	CHD1	79	76.488	ENSMALG00000013317	chd1	95	75.806	Monopterus_albus
ENSCANG00000036916	CHD1	100	92.182	MGP_CAROLIEiJ_G0021099	Chd1	99	94.172	Mus_caroli
ENSCANG00000036916	CHD1	100	93.932	ENSMUSG00000023852	Chd1	100	93.932	Mus_musculus
ENSCANG00000036916	CHD1	100	91.715	MGP_PahariEiJ_G0023414	Chd1	99	94.362	Mus_pahari
ENSCANG00000036916	CHD1	89	73.794	ENSNBRG00000006860	chd1	91	75.602	Neolamprologus_brichardi
ENSCANG00000036916	CHD1	100	94.854	ENSNLEG00000014493	CHD1	100	94.854	Nomascus_leucogenys
ENSCANG00000036916	CHD1	100	90.482	ENSOANG00000004891	CHD1	100	91.096	Ornithorhynchus_anatinus
ENSCANG00000036916	CHD1	59	72.826	ENSORLG00015016725	chd1	93	73.494	Oryzias_latipes_hsok
ENSCANG00000036916	CHD1	100	96.368	ENSPPAG00000043367	CHD1	100	96.368	Pan_paniscus
ENSCANG00000036916	CHD1	100	97.312	ENSPTRG00000017103	CHD1	100	97.312	Pan_troglodytes
ENSCANG00000036916	CHD1	100	97.839	ENSPANG00000006387	CHD1	100	97.839	Papio_anubis
ENSCANG00000036916	CHD1	91	76.084	ENSPKIG00000024719	chd1	94	76.706	Paramormyrops_kingsleyae
ENSCANG00000036916	CHD1	73	78.428	ENSPMGG00000005785	chd1	93	78.749	Periophthalmus_magnuspinnatus
ENSCANG00000036916	CHD1	100	93.637	ENSPEMG00000015939	Chd1	100	93.579	Peromyscus_maniculatus_bairdii
ENSCANG00000036916	CHD1	51	77.580	ENSPLAG00000006473	-	85	78.029	Poecilia_latipinna
ENSCANG00000036916	CHD1	97	72.563	ENSPREG00000004209	chd1	97	72.892	Poecilia_reticulata
ENSCANG00000036916	CHD1	83	93.239	ENSRNOG00000014434	Chd1	99	93.239	Rattus_norvegicus
ENSCANG00000036916	CHD1	100	95.047	ENSRBIG00000044325	CHD1	100	95.047	Rhinopithecus_bieti
ENSCANG00000036916	CHD1	100	97.723	ENSRROG00000001726	CHD1	100	97.753	Rhinopithecus_roxellana
ENSCANG00000036916	CHD1	72	79.068	ENSSFOG00015007161	chd1	90	79.708	Scleropages_formosus
ENSCANG00000036916	CHD1	79	75.994	ENSSDUG00000018314	chd1	94	75.753	Seriola_dumerili
ENSCANG00000036916	CHD1	51	79.954	ENSSLDG00000017244	chd1	84	81.635	Seriola_lalandi_dorsalis
ENSCANG00000036916	CHD1	79	76.012	ENSSPAG00000007024	chd1	95	76.271	Stegastes_partitus
ENSCANG00000036916	CHD1	86	95.745	ENSSSCG00000014177	CHD1	100	95.740	Sus_scrofa
ENSCANG00000036916	CHD1	97	70.585	ENSTRUG00000010282	chd1	90	73.921	Takifugu_rubripes
ENSCANG00000036916	CHD1	72	74.288	ENSTNIG00000007101	chd1	95	75.693	Tetraodon_nigroviridis
ENSCANG00000036916	CHD1	97	70.610	ENSXCOG00000017184	chd1	97	70.382	Xiphophorus_couchianus
ENSCANG00000036916	CHD1	77	75.667	ENSXMAG00000014538	chd1	95	76.263	Xiphophorus_maculatus