EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCANG00000037135 (Gene tree)
Gene ID: 105509555
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Colobus_angolensis_palliatus
Status: putative
Strand: Minus strand
Length: 31522 bases
Position: chrKN980251.1:4295145-4326666
Accession: 105509555
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCANP00000027472	HVSL	PF09749.9	3.5e-63	1	1
ENSCANP00000027457	HVSL	PF09749.9	3.7e-63	1	1
ENSCANP00000027476	HVSL	PF09749.9	2e-51	1	2
ENSCANP00000027476	HVSL	PF09749.9	2e-51	2	2
ENSCANP00000027483	HVSL	PF09749.9	6.7e-29	1	1
ENSCANP00000027480	HVSL	PF09749.9	1.8e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCANT00000050498	USB1-204	456	-	ENSCANP00000027480	151 (aa)	-	A0A2K5JF95
ENSCANT00000050501	USB1-205	534	-	ENSCANP00000027483	177 (aa)	-	A0A2K5JF34
ENSCANT00000050490	USB1-202	795	-	ENSCANP00000027472	264 (aa)	-	A0A2K5JF53
ENSCANT00000050475	USB1-201	1202	XM_011938810	ENSCANP00000027457	268 (aa)	XP_011794200	A0A2K5JF38
ENSCANT00000050494	USB1-203	741	XM_011938811	ENSCANP00000027476	246 (aa)	XP_011794201	A0A2K5JF67

Gene Model

Click here to download ENSCANG00000037135's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCANG00000037135's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCANG00000037135	USB1	100	95.849	ENSG00000103005	USB1	100	97.196	Homo_sapiens
ENSCANG00000037135	USB1	86	52.655	ENSAPOG00000011942	usb1	80	52.655	Acanthochromis_polyacanthus
ENSCANG00000037135	USB1	100	83.271	ENSAMEG00000017205	USB1	100	83.271	Ailuropoda_melanoleuca
ENSCANG00000037135	USB1	85	53.571	ENSACIG00000012234	usb1	82	53.571	Amphilophus_citrinellus
ENSCANG00000037135	USB1	86	54.425	ENSAOCG00000014831	usb1	80	54.425	Amphiprion_ocellaris
ENSCANG00000037135	USB1	86	54.867	ENSAPEG00000000296	usb1	80	54.867	Amphiprion_percula
ENSCANG00000037135	USB1	99	49.430	ENSATEG00000009348	usb1	82	53.247	Anabas_testudineus
ENSCANG00000037135	USB1	85	70.485	ENSAPLG00000002756	USB1	100	70.925	Anas_platyrhynchos
ENSCANG00000037135	USB1	85	64.602	ENSACAG00000015481	USB1	99	64.602	Anolis_carolinensis
ENSCANG00000037135	USB1	100	94.717	ENSANAG00000035640	USB1	100	94.717	Aotus_nancymaae
ENSCANG00000037135	USB1	94	49.799	ENSACLG00000020586	usb1	80	52.655	Astatotilapia_calliptera
ENSCANG00000037135	USB1	84	52.018	ENSAMXG00000040146	usb1	74	52.018	Astyanax_mexicanus
ENSCANG00000037135	USB1	100	83.019	ENSBTAG00000015758	USB1	100	83.019	Bos_taurus
ENSCANG00000037135	USB1	100	95.472	ENSCJAG00000011733	USB1	100	95.472	Callithrix_jacchus
ENSCANG00000037135	USB1	99	81.250	ENSCAFG00000008556	USB1	73	80.147	Canis_familiaris
ENSCANG00000037135	USB1	99	82.642	ENSCAFG00020009263	USB1	87	87.446	Canis_lupus_dingo
ENSCANG00000037135	USB1	100	82.642	ENSCHIG00000024290	USB1	100	82.642	Capra_hircus
ENSCANG00000037135	USB1	100	90.189	ENSTSYG00000006997	USB1	100	90.189	Carlito_syrichta
ENSCANG00000037135	USB1	74	86.607	ENSCAPG00000009057	USB1	100	72.897	Cavia_aperea
ENSCANG00000037135	USB1	100	82.463	ENSCPOG00000014325	USB1	100	81.343	Cavia_porcellus
ENSCANG00000037135	USB1	100	95.094	ENSCCAG00000022132	USB1	100	95.094	Cebus_capucinus
ENSCANG00000037135	USB1	100	96.981	ENSCATG00000032174	USB1	100	96.981	Cercocebus_atys
ENSCANG00000037135	USB1	67	87.500	ENSCLAG00000007363	USB1	100	87.500	Chinchilla_lanigera
ENSCANG00000037135	USB1	100	97.736	ENSCSAG00000004783	USB1	100	97.736	Chlorocebus_sabaeus
ENSCANG00000037135	USB1	88	68.534	ENSCPBG00000026943	USB1	83	68.831	Chrysemys_picta_bellii
ENSCANG00000037135	USB1	84	30.263	ENSCSAVG00000000894	-	82	30.263	Ciona_savignyi
ENSCANG00000037135	USB1	100	83.955	ENSCGRG00001011243	USB1	100	83.582	Cricetulus_griseus_chok1gshd
ENSCANG00000037135	USB1	100	83.955	ENSCGRG00000013252	USB1	100	83.582	Cricetulus_griseus_crigri
ENSCANG00000037135	USB1	98	47.985	ENSCSEG00000013881	usb1	84	50.644	Cynoglossus_semilaevis
ENSCANG00000037135	USB1	85	50.439	ENSCVAG00000009252	usb1	97	50.877	Cyprinodon_variegatus
ENSCANG00000037135	USB1	85	50.446	ENSDARG00000003841	usb1	81	50.446	Danio_rerio
ENSCANG00000037135	USB1	100	81.887	ENSDORG00000001888	Usb1	100	81.887	Dipodomys_ordii
ENSCANG00000037135	USB1	77	40.000	FBgn0037713	CG16790	78	40.000	Drosophila_melanogaster
ENSCANG00000037135	USB1	100	69.288	ENSETEG00000019682	USB1	91	69.421	Echinops_telfairi
ENSCANG00000037135	USB1	94	46.183	ENSEBUG00000005889	usb1	78	50.450	Eptatretus_burgeri
ENSCANG00000037135	USB1	100	85.660	ENSEASG00005005484	USB1	100	85.660	Equus_asinus_asinus
ENSCANG00000037135	USB1	100	86.415	ENSECAG00000019493	USB1	91	86.415	Equus_caballus
ENSCANG00000037135	USB1	67	78.977	ENSEEUG00000000154	USB1	66	78.977	Erinaceus_europaeus
ENSCANG00000037135	USB1	92	47.791	ENSELUG00000010974	usb1	91	47.791	Esox_lucius
ENSCANG00000037135	USB1	100	85.393	ENSFCAG00000002693	USB1	100	85.393	Felis_catus
ENSCANG00000037135	USB1	100	62.406	ENSFALG00000006876	USB1	99	63.333	Ficedula_albicollis
ENSCANG00000037135	USB1	100	85.019	ENSFDAG00000010052	USB1	100	84.270	Fukomys_damarensis
ENSCANG00000037135	USB1	94	46.250	ENSFHEG00000012334	usb1	78	53.333	Fundulus_heteroclitus
ENSCANG00000037135	USB1	84	51.570	ENSGMOG00000004228	usb1	99	51.570	Gadus_morhua
ENSCANG00000037135	USB1	84	68.304	ENSGALG00000035604	USB1	100	63.396	Gallus_gallus
ENSCANG00000037135	USB1	98	47.826	ENSGAFG00000021890	usb1	82	52.863	Gambusia_affinis
ENSCANG00000037135	USB1	99	47.170	ENSGACG00000003257	usb1	82	52.193	Gasterosteus_aculeatus
ENSCANG00000037135	USB1	100	63.869	ENSGAGG00000022572	USB1	88	65.975	Gopherus_agassizii
ENSCANG00000037135	USB1	100	96.604	ENSGGOG00000017147	USB1	100	96.604	Gorilla_gorilla
ENSCANG00000037135	USB1	94	51.004	ENSHBUG00000009823	usb1	80	53.097	Haplochromis_burtoni
ENSCANG00000037135	USB1	100	85.393	ENSHGLG00000016078	USB1	98	84.644	Heterocephalus_glaber_female
ENSCANG00000037135	USB1	100	85.393	ENSHGLG00100005562	USB1	98	84.644	Heterocephalus_glaber_male
ENSCANG00000037135	USB1	82	55.300	ENSHCOG00000015633	usb1	93	52.479	Hippocampus_comes
ENSCANG00000037135	USB1	85	53.571	ENSIPUG00000008601	usb1	78	53.571	Ictalurus_punctatus
ENSCANG00000037135	USB1	100	83.942	ENSSTOG00000007548	USB1	89	87.243	Ictidomys_tridecemlineatus
ENSCANG00000037135	USB1	100	85.075	ENSJJAG00000021859	Usb1	100	84.270	Jaculus_jaculus
ENSCANG00000037135	USB1	86	53.540	ENSKMAG00000007200	usb1	80	53.540	Kryptolebias_marmoratus
ENSCANG00000037135	USB1	75	52.261	ENSLBEG00000008452	usb1	64	53.158	Labrus_bergylta
ENSCANG00000037135	USB1	85	56.579	ENSLACG00000000105	USB1	76	57.018	Latimeria_chalumnae
ENSCANG00000037135	USB1	96	53.755	ENSLOCG00000000465	usb1	82	56.957	Lepisosteus_oculatus
ENSCANG00000037135	USB1	100	64.945	ENSLAFG00000002267	USB1	87	68.085	Loxodonta_africana
ENSCANG00000037135	USB1	100	97.358	ENSMFAG00000003926	USB1	100	97.358	Macaca_fascicularis
ENSCANG00000037135	USB1	100	97.358	ENSMMUG00000022669	USB1	100	97.358	Macaca_mulatta
ENSCANG00000037135	USB1	100	96.981	ENSMNEG00000042487	USB1	100	96.981	Macaca_nemestrina
ENSCANG00000037135	USB1	100	97.358	ENSMLEG00000028756	USB1	100	97.358	Mandrillus_leucophaeus
ENSCANG00000037135	USB1	98	48.913	ENSMAMG00000015092	usb1	83	52.790	Mastacembelus_armatus
ENSCANG00000037135	USB1	94	49.799	ENSMZEG00005010008	usb1	80	52.655	Maylandia_zebra
ENSCANG00000037135	USB1	100	83.521	ENSMAUG00000007832	Usb1	100	82.772	Mesocricetus_auratus
ENSCANG00000037135	USB1	100	89.434	ENSMICG00000004900	USB1	100	89.434	Microcebus_murinus
ENSCANG00000037135	USB1	100	83.209	ENSMOCG00000022647	Usb1	100	82.772	Microtus_ochrogaster
ENSCANG00000037135	USB1	85	53.333	ENSMMOG00000000490	usb1	88	53.070	Mola_mola
ENSCANG00000037135	USB1	99	68.421	ENSMODG00000014067	USB1	99	66.541	Monodelphis_domestica
ENSCANG00000037135	USB1	95	50.199	ENSMALG00000005930	usb1	81	52.814	Monopterus_albus
ENSCANG00000037135	USB1	100	79.775	MGP_CAROLIEiJ_G0031421	Usb1	100	83.186	Mus_caroli
ENSCANG00000037135	USB1	100	80.150	ENSMUSG00000031792	Usb1	100	84.071	Mus_musculus
ENSCANG00000037135	USB1	100	80.524	MGP_PahariEiJ_G0023019	Usb1	100	84.615	Mus_pahari
ENSCANG00000037135	USB1	100	79.401	MGP_SPRETEiJ_G0032540	Usb1	100	78.652	Mus_spretus
ENSCANG00000037135	USB1	100	81.413	ENSMPUG00000004684	USB1	96	81.041	Mustela_putorius_furo
ENSCANG00000037135	USB1	88	88.312	ENSMLUG00000007400	USB1	100	88.312	Myotis_lucifugus
ENSCANG00000037135	USB1	100	82.963	ENSNGAG00000009703	Usb1	100	82.900	Nannospalax_galili
ENSCANG00000037135	USB1	94	47.521	ENSNBRG00000008747	usb1	99	53.465	Neolamprologus_brichardi
ENSCANG00000037135	USB1	99	92.157	ENSNLEG00000003340	USB1	100	96.800	Nomascus_leucogenys
ENSCANG00000037135	USB1	83	61.600	ENSMEUG00000003328	-	80	63.492	Notamacropus_eugenii
ENSCANG00000037135	USB1	77	76.923	ENSOPRG00000011803	USB1	72	87.879	Ochotona_princeps
ENSCANG00000037135	USB1	100	81.273	ENSODEG00000016214	USB1	100	80.524	Octodon_degus
ENSCANG00000037135	USB1	98	46.975	ENSONIG00000011063	usb1	81	52.655	Oreochromis_niloticus
ENSCANG00000037135	USB1	85	74.222	ENSOANG00000012118	USB1	94	74.222	Ornithorhynchus_anatinus
ENSCANG00000037135	USB1	94	48.193	ENSORLG00000012479	usb1	83	51.327	Oryzias_latipes
ENSCANG00000037135	USB1	94	48.594	ENSORLG00020018671	usb1	84	51.316	Oryzias_latipes_hni
ENSCANG00000037135	USB1	86	51.770	ENSORLG00015009679	usb1	84	51.316	Oryzias_latipes_hsok
ENSCANG00000037135	USB1	86	50.885	ENSOMEG00000012930	usb1	82	50.885	Oryzias_melastigma
ENSCANG00000037135	USB1	100	87.449	ENSOGAG00000003273	USB1	100	87.449	Otolemur_garnettii
ENSCANG00000037135	USB1	96	81.423	ENSOARG00000001107	USB1	93	83.539	Ovis_aries
ENSCANG00000037135	USB1	100	96.226	ENSPPAG00000042137	USB1	100	96.226	Pan_paniscus
ENSCANG00000037135	USB1	100	85.768	ENSPPRG00000024797	USB1	100	85.768	Panthera_pardus
ENSCANG00000037135	USB1	100	85.393	ENSPTIG00000007506	USB1	100	85.393	Panthera_tigris_altaica
ENSCANG00000037135	USB1	100	95.547	ENSPTRG00000008172	USB1	100	98.131	Pan_troglodytes
ENSCANG00000037135	USB1	100	97.358	ENSPANG00000025138	USB1	100	97.358	Papio_anubis
ENSCANG00000037135	USB1	94	54.435	ENSPKIG00000015109	usb1	82	54.321	Paramormyrops_kingsleyae
ENSCANG00000037135	USB1	85	54.867	ENSPSIG00000004305	USB1	100	54.867	Pelodiscus_sinensis
ENSCANG00000037135	USB1	84	52.018	ENSPMGG00000017725	usb1	85	52.018	Periophthalmus_magnuspinnatus
ENSCANG00000037135	USB1	100	82.051	ENSPEMG00000016183	Usb1	100	79.412	Peromyscus_maniculatus_bairdii
ENSCANG00000037135	USB1	89	48.945	ENSPMAG00000000462	usb1	100	48.945	Petromyzon_marinus
ENSCANG00000037135	USB1	98	48.727	ENSPFOG00000011130	usb1	81	52.423	Poecilia_formosa
ENSCANG00000037135	USB1	98	48.727	ENSPLAG00000009820	usb1	81	52.423	Poecilia_latipinna
ENSCANG00000037135	USB1	98	48.727	ENSPMEG00000006402	usb1	81	52.423	Poecilia_mexicana
ENSCANG00000037135	USB1	94	46.479	ENSPREG00000001047	usb1	79	53.846	Poecilia_reticulata
ENSCANG00000037135	USB1	95	92.857	ENSPPYG00000007401	USB1	100	92.857	Pongo_abelii
ENSCANG00000037135	USB1	100	90.943	ENSPCOG00000022612	USB1	100	90.943	Propithecus_coquereli
ENSCANG00000037135	USB1	100	80.755	ENSPVAG00000004613	USB1	100	80.755	Pteropus_vampyrus
ENSCANG00000037135	USB1	94	51.515	ENSPNYG00000022262	usb1	80	53.097	Pundamilia_nyererei
ENSCANG00000037135	USB1	85	51.786	ENSPNAG00000011736	usb1	76	51.786	Pygocentrus_nattereri
ENSCANG00000037135	USB1	100	82.397	ENSRNOG00000013216	Usb1	100	81.648	Rattus_norvegicus
ENSCANG00000037135	USB1	100	98.381	ENSRBIG00000044466	USB1	100	99.065	Rhinopithecus_bieti
ENSCANG00000037135	USB1	100	98.491	ENSRROG00000029211	USB1	100	98.491	Rhinopithecus_roxellana
ENSCANG00000037135	USB1	100	94.340	ENSSBOG00000029362	USB1	100	94.340	Saimiri_boliviensis_boliviensis
ENSCANG00000037135	USB1	83	73.516	ENSSHAG00000006993	USB1	96	69.672	Sarcophilus_harrisii
ENSCANG00000037135	USB1	98	51.515	ENSSFOG00015023663	usb1	76	54.959	Scleropages_formosus
ENSCANG00000037135	USB1	99	49.640	ENSSMAG00000015834	usb1	83	51.417	Scophthalmus_maximus
ENSCANG00000037135	USB1	85	55.804	ENSSDUG00000002949	usb1	83	55.804	Seriola_dumerili
ENSCANG00000037135	USB1	99	50.192	ENSSLDG00000014174	usb1	80	55.310	Seriola_lalandi_dorsalis
ENSCANG00000037135	USB1	81	69.626	ENSSPUG00000006741	USB1	100	69.626	Sphenodon_punctatus
ENSCANG00000037135	USB1	97	46.875	ENSSPAG00000007484	usb1	79	52.655	Stegastes_partitus
ENSCANG00000037135	USB1	100	83.271	ENSSSCG00000002807	USB1	100	83.643	Sus_scrofa
ENSCANG00000037135	USB1	80	70.755	ENSTGUG00000004792	USB1	87	69.369	Taeniopygia_guttata
ENSCANG00000037135	USB1	98	47.191	ENSTRUG00000021069	usb1	92	47.984	Takifugu_rubripes
ENSCANG00000037135	USB1	100	45.353	ENSTNIG00000000626	usb1	83	48.661	Tetraodon_nigroviridis
ENSCANG00000037135	USB1	88	62.069	ENSTBEG00000001507	USB1	100	62.069	Tupaia_belangeri
ENSCANG00000037135	USB1	100	82.900	ENSUAMG00000016823	USB1	100	83.271	Ursus_americanus
ENSCANG00000037135	USB1	81	87.850	ENSUMAG00000021369	USB1	100	87.850	Ursus_maritimus
ENSCANG00000037135	USB1	77	59.901	ENSVPAG00000009834	-	59	87.500	Vicugna_pacos
ENSCANG00000037135	USB1	99	82.463	ENSVVUG00000023700	USB1	93	85.477	Vulpes_vulpes
ENSCANG00000037135	USB1	97	50.575	ENSXETG00000013795	usb1	89	54.709	Xenopus_tropicalis
ENSCANG00000037135	USB1	86	52.863	ENSXMAG00000024687	usb1	67	52.863	Xiphophorus_maculatus