EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCANG00000037495 (Gene tree)
Gene ID: 105523296
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Colobus_angolensis_palliatus
Status: putative
Strand: Plus strand
Length: 132862 bases
Position: chrKN983310.1:4292294-4425155
Accession: 105523296
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCANP00000028375	XRN_N	PF03159.18	2.5e-96	1	1
ENSCANP00000028354	XRN_N	PF03159.18	5.5e-96	1	1
ENSCANP00000028346	XRN_N	PF03159.18	8.7e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCANT00000051396	XRN1-201	6613	XM_011958083	ENSCANP00000028346	1706 (aa)	XP_011813473	A0A2K5JHP2
ENSCANT00000051428	XRN1-203	2910	-	ENSCANP00000028375	969 (aa)	-	A0A2K5JHS5
ENSCANT00000051404	XRN1-202	6577	XM_011958084	ENSCANP00000028354	1694 (aa)	XP_011813474	A0A2K5JHP0

Gene Model

Click here to download ENSCANG00000037495's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCANG00000037495's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCANG00000037495	XRN1	61	38.799	ENSCANG00000040240	XRN2	71	39.416

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCANG00000037495	XRN1	100	97.655	ENSG00000114127	XRN1	100	100.000	Homo_sapiens
ENSCANG00000037495	XRN1	99	77.778	ENSAPOG00000000622	xrn1	93	76.333	Acanthochromis_polyacanthus
ENSCANG00000037495	XRN1	99	97.329	ENSAMEG00000012538	XRN1	100	92.277	Ailuropoda_melanoleuca
ENSCANG00000037495	XRN1	99	77.971	ENSACIG00000001057	xrn1	94	72.742	Amphilophus_citrinellus
ENSCANG00000037495	XRN1	99	77.901	ENSAOCG00000014097	xrn1	95	69.679	Amphiprion_ocellaris
ENSCANG00000037495	XRN1	99	77.901	ENSAPEG00000006620	xrn1	98	62.772	Amphiprion_percula
ENSCANG00000037495	XRN1	99	76.115	ENSATEG00000009752	xrn1	97	71.190	Anabas_testudineus
ENSCANG00000037495	XRN1	96	89.073	ENSAPLG00000004905	XRN1	100	76.423	Anas_platyrhynchos
ENSCANG00000037495	XRN1	99	86.032	ENSACAG00000004985	XRN1	100	72.354	Anolis_carolinensis
ENSCANG00000037495	XRN1	99	98.887	ENSANAG00000029013	XRN1	100	96.694	Aotus_nancymaae
ENSCANG00000037495	XRN1	99	77.179	ENSACLG00000004806	xrn1	96	62.136	Astatotilapia_calliptera
ENSCANG00000037495	XRN1	99	74.127	ENSAMXG00000019370	xrn1	96	93.269	Astyanax_mexicanus
ENSCANG00000037495	XRN1	99	96.707	ENSBTAG00000011524	XRN1	100	92.384	Bos_taurus
ENSCANG00000037495	XRN1	93	52.481	WBGene00012730	xrn-1	80	39.190	Caenorhabditis_elegans
ENSCANG00000037495	XRN1	99	98.415	ENSCJAG00000001872	XRN1	100	96.753	Callithrix_jacchus
ENSCANG00000037495	XRN1	99	98.204	ENSCAFG00000007783	XRN1	100	93.494	Canis_familiaris
ENSCANG00000037495	XRN1	99	98.204	ENSCAFG00020009120	XRN1	99	95.675	Canis_lupus_dingo
ENSCANG00000037495	XRN1	99	96.707	ENSCHIG00000019192	XRN1	99	90.283	Capra_hircus
ENSCANG00000037495	XRN1	99	97.306	ENSTSYG00000002705	XRN1	100	94.572	Carlito_syrichta
ENSCANG00000037495	XRN1	97	74.074	ENSCAPG00000004604	-	99	76.949	Cavia_aperea
ENSCANG00000037495	XRN1	100	99.278	ENSCCAG00000034800	XRN1	100	99.278	Cebus_capucinus
ENSCANG00000037495	XRN1	100	99.233	ENSCATG00000041794	XRN1	100	99.233	Cercocebus_atys
ENSCANG00000037495	XRN1	100	96.285	ENSCLAG00000001451	XRN1	100	96.285	Chinchilla_lanigera
ENSCANG00000037495	XRN1	100	99.238	ENSCSAG00000011265	XRN1	100	99.238	Chlorocebus_sabaeus
ENSCANG00000037495	XRN1	62	98.701	ENSCHOG00000013961	-	62	98.701	Choloepus_hoffmanni
ENSCANG00000037495	XRN1	84	61.368	ENSCSAVG00000008584	-	98	45.070	Ciona_savignyi
ENSCANG00000037495	XRN1	100	95.975	ENSCGRG00001019411	Xrn1	100	95.975	Cricetulus_griseus_chok1gshd
ENSCANG00000037495	XRN1	100	95.975	ENSCGRG00000012464	Xrn1	100	95.975	Cricetulus_griseus_crigri
ENSCANG00000037495	XRN1	99	77.619	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSCANG00000037495	XRN1	99	76.153	ENSCVAG00000013089	xrn1	99	71.958	Cyprinodon_variegatus
ENSCANG00000037495	XRN1	99	79.081	ENSDARG00000091652	xrn1	98	79.958	Danio_rerio
ENSCANG00000037495	XRN1	99	96.343	ENSDORG00000013833	Xrn1	100	87.269	Dipodomys_ordii
ENSCANG00000037495	XRN1	94	54.958	FBgn0020261	pcm	76	39.691	Drosophila_melanogaster
ENSCANG00000037495	XRN1	86	100.000	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSCANG00000037495	XRN1	100	97.007	ENSEASG00005002687	XRN1	100	97.007	Equus_asinus_asinus
ENSCANG00000037495	XRN1	99	97.305	ENSECAG00000008301	XRN1	100	93.087	Equus_caballus
ENSCANG00000037495	XRN1	84	97.898	ENSEEUG00000011323	XRN1	92	83.382	Erinaceus_europaeus
ENSCANG00000037495	XRN1	99	78.797	ENSELUG00000000169	xrn1	94	63.516	Esox_lucius
ENSCANG00000037495	XRN1	99	96.108	ENSFCAG00000027589	XRN1	99	96.264	Felis_catus
ENSCANG00000037495	XRN1	99	88.712	ENSFALG00000007021	XRN1	100	75.070	Ficedula_albicollis
ENSCANG00000037495	XRN1	100	95.975	ENSFDAG00000020494	XRN1	100	95.975	Fukomys_damarensis
ENSCANG00000037495	XRN1	50	70.478	ENSFHEG00000017356	-	98	70.062	Fundulus_heteroclitus
ENSCANG00000037495	XRN1	99	76.471	ENSGMOG00000006396	xrn1	80	68.368	Gadus_morhua
ENSCANG00000037495	XRN1	99	89.189	ENSGALG00000002706	XRN1	100	75.295	Gallus_gallus
ENSCANG00000037495	XRN1	99	76.667	ENSGACG00000014328	xrn1	96	61.598	Gasterosteus_aculeatus
ENSCANG00000037495	XRN1	99	87.937	ENSGAGG00000017535	XRN1	99	78.481	Gopherus_agassizii
ENSCANG00000037495	XRN1	100	97.816	ENSGGOG00000008047	XRN1	100	97.816	Gorilla_gorilla
ENSCANG00000037495	XRN1	99	75.436	ENSHBUG00000005908	xrn1	98	72.895	Haplochromis_burtoni
ENSCANG00000037495	XRN1	99	96.989	ENSHGLG00000014476	XRN1	100	96.694	Heterocephalus_glaber_female
ENSCANG00000037495	XRN1	99	96.989	ENSHGLG00100015130	XRN1	100	96.694	Heterocephalus_glaber_male
ENSCANG00000037495	XRN1	99	75.495	ENSHCOG00000014062	xrn1	96	70.008	Hippocampus_comes
ENSCANG00000037495	XRN1	99	79.048	ENSIPUG00000015229	xrn1	96	64.505	Ictalurus_punctatus
ENSCANG00000037495	XRN1	99	97.781	ENSSTOG00000013552	XRN1	99	97.781	Ictidomys_tridecemlineatus
ENSCANG00000037495	XRN1	97	95.339	ENSJJAG00000010863	Xrn1	100	95.339	Jaculus_jaculus
ENSCANG00000037495	XRN1	99	77.796	ENSKMAG00000021356	xrn1	94	75.949	Kryptolebias_marmoratus
ENSCANG00000037495	XRN1	99	77.266	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSCANG00000037495	XRN1	99	84.127	ENSLACG00000009020	XRN1	97	70.855	Latimeria_chalumnae
ENSCANG00000037495	XRN1	99	82.148	ENSLOCG00000007944	xrn1	98	66.061	Lepisosteus_oculatus
ENSCANG00000037495	XRN1	99	97.138	ENSLAFG00000015426	XRN1	100	96.352	Loxodonta_africana
ENSCANG00000037495	XRN1	100	99.292	ENSMFAG00000032599	XRN1	100	99.292	Macaca_fascicularis
ENSCANG00000037495	XRN1	100	99.351	ENSMMUG00000014038	XRN1	100	99.351	Macaca_mulatta
ENSCANG00000037495	XRN1	100	99.115	ENSMNEG00000034217	XRN1	100	99.115	Macaca_nemestrina
ENSCANG00000037495	XRN1	99	78.323	ENSMAMG00000013219	xrn1	94	77.320	Mastacembelus_armatus
ENSCANG00000037495	XRN1	99	77.093	ENSMZEG00005015099	xrn1	96	62.018	Maylandia_zebra
ENSCANG00000037495	XRN1	97	84.983	ENSMGAG00000006333	XRN1	100	75.174	Meleagris_gallopavo
ENSCANG00000037495	XRN1	99	96.989	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSCANG00000037495	XRN1	100	94.634	ENSMOCG00000008665	Xrn1	100	94.634	Microtus_ochrogaster
ENSCANG00000037495	XRN1	54	68.450	ENSMMOG00000020896	-	96	68.450	Mola_mola
ENSCANG00000037495	XRN1	99	89.968	ENSMODG00000021236	XRN1	100	82.253	Monodelphis_domestica
ENSCANG00000037495	XRN1	99	71.111	ENSMALG00000004098	xrn1	100	57.367	Monopterus_albus
ENSCANG00000037495	XRN1	99	95.248	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSCANG00000037495	XRN1	99	95.880	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSCANG00000037495	XRN1	99	95.880	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSCANG00000037495	XRN1	99	95.880	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSCANG00000037495	XRN1	99	97.904	ENSMPUG00000012040	XRN1	100	93.732	Mustela_putorius_furo
ENSCANG00000037495	XRN1	99	97.138	ENSMLUG00000016885	XRN1	100	89.607	Myotis_lucifugus
ENSCANG00000037495	XRN1	99	93.257	ENSNGAG00000023964	Xrn1	100	93.257	Nannospalax_galili
ENSCANG00000037495	XRN1	99	99.049	ENSNLEG00000004726	XRN1	100	97.993	Nomascus_leucogenys
ENSCANG00000037495	XRN1	76	98.969	ENSMEUG00000014473	-	80	99.029	Notamacropus_eugenii
ENSCANG00000037495	XRN1	74	92.391	ENSOPRG00000007337	-	78	84.800	Ochotona_princeps
ENSCANG00000037495	XRN1	99	78.006	ENSONIG00000016673	xrn1	99	64.687	Oreochromis_niloticus
ENSCANG00000037495	XRN1	85	88.508	ENSOANG00000006735	XRN1	100	77.827	Ornithorhynchus_anatinus
ENSCANG00000037495	XRN1	99	96.830	ENSOCUG00000001861	XRN1	100	90.258	Oryctolagus_cuniculus
ENSCANG00000037495	XRN1	99	78.213	ENSORLG00000013005	xrn1	96	61.429	Oryzias_latipes
ENSCANG00000037495	XRN1	99	79.206	ENSORLG00020005559	xrn1	100	61.300	Oryzias_latipes_hni
ENSCANG00000037495	XRN1	99	78.730	ENSORLG00015022523	xrn1	96	62.241	Oryzias_latipes_hsok
ENSCANG00000037495	XRN1	99	78.219	ENSOMEG00000015397	xrn1	99	72.742	Oryzias_melastigma
ENSCANG00000037495	XRN1	99	93.429	ENSOGAG00000000170	XRN1	100	91.506	Otolemur_garnettii
ENSCANG00000037495	XRN1	99	96.707	ENSOARG00000006343	XRN1	99	92.786	Ovis_aries
ENSCANG00000037495	XRN1	100	97.698	ENSPPAG00000010180	XRN1	100	97.698	Pan_paniscus
ENSCANG00000037495	XRN1	99	97.904	ENSPPRG00000007125	XRN1	100	93.864	Panthera_pardus
ENSCANG00000037495	XRN1	99	97.904	ENSPTIG00000021081	XRN1	100	93.923	Panthera_tigris_altaica
ENSCANG00000037495	XRN1	100	97.816	ENSPTRG00000015482	XRN1	100	97.816	Pan_troglodytes
ENSCANG00000037495	XRN1	100	99.233	ENSPANG00000010638	XRN1	100	99.233	Papio_anubis
ENSCANG00000037495	XRN1	99	88.114	ENSPSIG00000018050	XRN1	100	77.270	Pelodiscus_sinensis
ENSCANG00000037495	XRN1	99	73.967	ENSPMGG00000002648	xrn1	98	78.807	Periophthalmus_magnuspinnatus
ENSCANG00000037495	XRN1	100	95.356	ENSPEMG00000020610	Xrn1	100	95.356	Peromyscus_maniculatus_bairdii
ENSCANG00000037495	XRN1	93	57.450	ENSPMAG00000002975	xrn1	91	78.448	Petromyzon_marinus
ENSCANG00000037495	XRN1	99	89.984	ENSPCIG00000028735	XRN1	100	89.669	Phascolarctos_cinereus
ENSCANG00000037495	XRN1	99	77.480	ENSPFOG00000013932	xrn1	99	65.148	Poecilia_formosa
ENSCANG00000037495	XRN1	99	77.848	ENSPLAG00000021653	xrn1	99	64.358	Poecilia_latipinna
ENSCANG00000037495	XRN1	99	77.813	ENSPMEG00000003076	xrn1	95	64.938	Poecilia_mexicana
ENSCANG00000037495	XRN1	99	77.287	ENSPREG00000021147	xrn1	97	62.118	Poecilia_reticulata
ENSCANG00000037495	XRN1	100	97.773	ENSPPYG00000014172	XRN1	100	97.773	Pongo_abelii
ENSCANG00000037495	XRN1	92	95.238	ENSPCAG00000005638	XRN1	100	81.983	Procavia_capensis
ENSCANG00000037495	XRN1	100	97.936	ENSPCOG00000013089	XRN1	99	97.936	Propithecus_coquereli
ENSCANG00000037495	XRN1	99	96.687	ENSPVAG00000016265	XRN1	96	92.634	Pteropus_vampyrus
ENSCANG00000037495	XRN1	99	77.338	ENSPNYG00000010570	xrn1	95	62.902	Pundamilia_nyererei
ENSCANG00000037495	XRN1	99	76.145	ENSPNAG00000023531	xrn1	96	61.988	Pygocentrus_nattereri
ENSCANG00000037495	XRN1	99	95.563	ENSRNOG00000042951	Xrn1	100	87.348	Rattus_norvegicus
ENSCANG00000037495	XRN1	100	98.653	ENSRBIG00000041227	XRN1	100	98.653	Rhinopithecus_bieti
ENSCANG00000037495	XRN1	88	54.496	YGL173C	XRN1	81	34.434	Saccharomyces_cerevisiae
ENSCANG00000037495	XRN1	99	98.732	ENSSBOG00000029561	XRN1	100	96.753	Saimiri_boliviensis_boliviensis
ENSCANG00000037495	XRN1	96	89.934	ENSSHAG00000016207	XRN1	100	81.587	Sarcophilus_harrisii
ENSCANG00000037495	XRN1	99	78.537	ENSSFOG00015024211	xrn1	97	62.959	Scleropages_formosus
ENSCANG00000037495	XRN1	99	79.556	ENSSMAG00000016534	xrn1	95	72.617	Scophthalmus_maximus
ENSCANG00000037495	XRN1	99	79.048	ENSSDUG00000010306	xrn1	91	72.182	Seriola_dumerili
ENSCANG00000037495	XRN1	99	79.048	ENSSLDG00000021543	xrn1	97	71.746	Seriola_lalandi_dorsalis
ENSCANG00000037495	XRN1	89	92.881	ENSSARG00000007741	-	83	85.640	Sorex_araneus
ENSCANG00000037495	XRN1	50	76.268	ENSSPAG00000009856	-	96	76.673	Stegastes_partitus
ENSCANG00000037495	XRN1	99	88.712	ENSTGUG00000008498	XRN1	100	77.307	Taeniopygia_guttata
ENSCANG00000037495	XRN1	99	77.316	ENSTRUG00000004895	xrn1	96	75.574	Takifugu_rubripes
ENSCANG00000037495	XRN1	97	76.645	ENSTNIG00000017615	xrn1	96	60.301	Tetraodon_nigroviridis
ENSCANG00000037495	XRN1	99	87.719	ENSTBEG00000003256	XRN1	89	87.719	Tupaia_belangeri
ENSCANG00000037495	XRN1	99	97.590	ENSTTRG00000012914	XRN1	100	89.273	Tursiops_truncatus
ENSCANG00000037495	XRN1	99	98.204	ENSUAMG00000001608	XRN1	99	94.571	Ursus_americanus
ENSCANG00000037495	XRN1	99	98.204	ENSUMAG00000013625	XRN1	100	94.731	Ursus_maritimus
ENSCANG00000037495	XRN1	99	97.464	ENSVPAG00000004690	XRN1	100	90.973	Vicugna_pacos
ENSCANG00000037495	XRN1	99	98.204	ENSVVUG00000024461	XRN1	99	97.934	Vulpes_vulpes
ENSCANG00000037495	XRN1	99	82.780	ENSXETG00000000619	xrn1	99	88.802	Xenopus_tropicalis
ENSCANG00000037495	XRN1	99	77.583	ENSXCOG00000007917	xrn1	95	62.979	Xiphophorus_couchianus
ENSCANG00000037495	XRN1	99	76.630	ENSXMAG00000018320	xrn1	92	72.127	Xiphophorus_maculatus