EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCANG00000038359 (Gene tree)
Gene ID: 105519284
Gene Symbol: APOBEC1
Alias: APOBEC-1|BEDP|CDAR1|HEPR
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Colobus_angolensis_palliatus
Status: putative
Strand: Minus strand
Length: 5219 bases
Position: chrKN979496.1:3054126-3059344
Accession: 105519284
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCANP00000029479	APOBEC_N	PF08210.11	3.5e-28	1	1
ENSCANP00000029479	APOBEC_C	PF05240.14	4.9e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCANT00000052640	APOBEC1-201	836	XM_011952598	ENSCANP00000029479	230 (aa)	XP_011807988	A0A2K5JKV4

Gene Model

Click here to download ENSCANG00000038359's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCANG00000038359's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCANG00000038359	APOBEC1	65	34.259	ENSCANG00000033269	-	68	34.259

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCANG00000038359	APOBEC1	100	93.478	ENSG00000111701	APOBEC1	97	93.478	Homo_sapiens
ENSCANG00000038359	APOBEC1	100	80.000	ENSAMEG00000007098	APOBEC1	97	80.000	Ailuropoda_melanoleuca
ENSCANG00000038359	APOBEC1	74	39.181	ENSACAG00000028578	-	93	39.181	Anolis_carolinensis
ENSCANG00000038359	APOBEC1	100	90.000	ENSANAG00000027743	APOBEC1	93	90.000	Aotus_nancymaae
ENSCANG00000038359	APOBEC1	100	73.913	ENSBTAG00000014683	APOBEC1	97	73.913	Bos_taurus
ENSCANG00000038359	APOBEC1	96	90.950	ENSCJAG00000005398	APOBEC1	100	90.950	Callithrix_jacchus
ENSCANG00000038359	APOBEC1	100	80.000	ENSCAFG00000013901	APOBEC1	97	80.000	Canis_familiaris
ENSCANG00000038359	APOBEC1	98	79.204	ENSCAFG00020003511	APOBEC1	95	79.204	Canis_lupus_dingo
ENSCANG00000038359	APOBEC1	100	74.348	ENSCHIG00000011898	APOBEC1	95	74.348	Capra_hircus
ENSCANG00000038359	APOBEC1	61	82.270	ENSTSYG00000029141	APOBEC1	100	82.270	Carlito_syrichta
ENSCANG00000038359	APOBEC1	93	69.626	ENSCAPG00000015882	-	99	69.626	Cavia_aperea
ENSCANG00000038359	APOBEC1	99	68.559	ENSCPOG00000033068	APOBEC1	97	68.559	Cavia_porcellus
ENSCANG00000038359	APOBEC1	100	91.739	ENSCCAG00000022258	APOBEC1	97	91.739	Cebus_capucinus
ENSCANG00000038359	APOBEC1	100	97.826	ENSCATG00000021613	APOBEC1	93	97.826	Cercocebus_atys
ENSCANG00000038359	APOBEC1	97	70.852	ENSCLAG00000014645	APOBEC1	97	70.852	Chinchilla_lanigera
ENSCANG00000038359	APOBEC1	83	97.382	ENSCSAG00000009817	APOBEC1	100	97.382	Chlorocebus_sabaeus
ENSCANG00000038359	APOBEC1	94	42.273	ENSCPBG00000014331	-	88	42.273	Chrysemys_picta_bellii
ENSCANG00000038359	APOBEC1	77	47.826	ENSCPBG00000014335	-	74	47.826	Chrysemys_picta_bellii
ENSCANG00000038359	APOBEC1	81	47.340	ENSCPBG00000014328	-	82	47.340	Chrysemys_picta_bellii
ENSCANG00000038359	APOBEC1	85	50.000	ENSCPBG00000014329	-	54	50.000	Chrysemys_picta_bellii
ENSCANG00000038359	APOBEC1	81	47.872	ENSCPBG00000014327	-	79	40.686	Chrysemys_picta_bellii
ENSCANG00000038359	APOBEC1	70	49.383	ENSCPBG00000017398	-	71	49.383	Chrysemys_picta_bellii
ENSCANG00000038359	APOBEC1	97	71.300	ENSCGRG00001011130	Apobec1	97	71.300	Cricetulus_griseus_chok1gshd
ENSCANG00000038359	APOBEC1	97	71.300	ENSCGRG00000008644	Apobec1	97	71.300	Cricetulus_griseus_crigri
ENSCANG00000038359	APOBEC1	100	80.435	ENSDNOG00000010926	APOBEC1	97	80.435	Dasypus_novemcinctus
ENSCANG00000038359	APOBEC1	93	65.888	ENSDORG00000023717	Apobec1	100	65.888	Dipodomys_ordii
ENSCANG00000038359	APOBEC1	99	79.039	ENSETEG00000004867	APOBEC1	97	79.039	Echinops_telfairi
ENSCANG00000038359	APOBEC1	100	81.739	ENSEASG00005015951	APOBEC1	97	81.739	Equus_asinus_asinus
ENSCANG00000038359	APOBEC1	83	82.199	ENSECAG00000017163	APOBEC1	100	82.199	Equus_caballus
ENSCANG00000038359	APOBEC1	89	54.412	ENSEEUG00000007530	-	97	54.412	Erinaceus_europaeus
ENSCANG00000038359	APOBEC1	96	66.063	ENSEEUG00000009112	-	98	66.063	Erinaceus_europaeus
ENSCANG00000038359	APOBEC1	100	82.609	ENSFCAG00000009350	APOBEC1	97	82.609	Felis_catus
ENSCANG00000038359	APOBEC1	61	46.479	ENSFALG00000007257	-	70	46.479	Ficedula_albicollis
ENSCANG00000038359	APOBEC1	90	60.870	ENSFDAG00000018470	APOBEC1	99	60.870	Fukomys_damarensis
ENSCANG00000038359	APOBEC1	81	47.368	ENSGAGG00000006624	-	66	47.368	Gopherus_agassizii
ENSCANG00000038359	APOBEC1	70	51.235	ENSGAGG00000004947	-	83	53.383	Gopherus_agassizii
ENSCANG00000038359	APOBEC1	90	46.890	ENSGAGG00000011837	-	88	52.500	Gopherus_agassizii
ENSCANG00000038359	APOBEC1	74	44.068	ENSGAGG00000021745	-	64	44.068	Gopherus_agassizii
ENSCANG00000038359	APOBEC1	79	46.448	ENSGAGG00000021744	-	71	46.448	Gopherus_agassizii
ENSCANG00000038359	APOBEC1	99	66.812	ENSHGLG00000001495	APOBEC1	97	66.812	Heterocephalus_glaber_female
ENSCANG00000038359	APOBEC1	98	66.814	ENSHGLG00100002187	APOBEC1	96	66.814	Heterocephalus_glaber_male
ENSCANG00000038359	APOBEC1	93	65.116	ENSSTOG00000021971	APOBEC1	100	78.571	Ictidomys_tridecemlineatus
ENSCANG00000038359	APOBEC1	97	75.225	ENSJJAG00000022108	Apobec1	97	75.225	Jaculus_jaculus
ENSCANG00000038359	APOBEC1	97	77.130	ENSLAFG00000030837	APOBEC1	100	77.130	Loxodonta_africana
ENSCANG00000038359	APOBEC1	100	97.826	ENSMFAG00000000277	APOBEC1	100	97.382	Macaca_fascicularis
ENSCANG00000038359	APOBEC1	100	97.391	ENSMNEG00000029670	APOBEC1	97	97.391	Macaca_nemestrina
ENSCANG00000038359	APOBEC1	100	97.826	ENSMLEG00000036301	APOBEC1	97	97.826	Mandrillus_leucophaeus
ENSCANG00000038359	APOBEC1	94	71.759	ENSMAUG00000022167	Apobec1	97	71.759	Mesocricetus_auratus
ENSCANG00000038359	APOBEC1	100	83.478	ENSMICG00000043645	APOBEC1	97	83.784	Microcebus_murinus
ENSCANG00000038359	APOBEC1	100	68.696	ENSMODG00000018004	APOBEC1	97	68.696	Monodelphis_domestica
ENSCANG00000038359	APOBEC1	97	70.721	ENSMUSG00000040613	Apobec1	97	70.721	Mus_musculus
ENSCANG00000038359	APOBEC1	97	69.369	MGP_PahariEiJ_G0022580	-	97	69.369	Mus_pahari
ENSCANG00000038359	APOBEC1	97	70.721	MGP_SPRETEiJ_G0029857	Apobec1	97	70.721	Mus_spretus
ENSCANG00000038359	APOBEC1	100	77.826	ENSMPUG00000017532	APOBEC1	97	77.826	Mustela_putorius_furo
ENSCANG00000038359	APOBEC1	97	72.646	ENSNGAG00000022607	Apobec1	97	72.646	Nannospalax_galili
ENSCANG00000038359	APOBEC1	100	95.217	ENSNLEG00000005342	APOBEC1	97	95.217	Nomascus_leucogenys
ENSCANG00000038359	APOBEC1	100	66.087	ENSMEUG00000013406	APOBEC1	97	66.087	Notamacropus_eugenii
ENSCANG00000038359	APOBEC1	79	64.641	ENSOPRG00000009508	-	100	64.641	Ochotona_princeps
ENSCANG00000038359	APOBEC1	100	77.391	ENSOCUG00000025736	APOBEC1	86	77.391	Oryctolagus_cuniculus
ENSCANG00000038359	APOBEC1	99	80.786	ENSOGAG00000026415	APOBEC1	97	80.786	Otolemur_garnettii
ENSCANG00000038359	APOBEC1	100	73.478	ENSOARG00000002072	APOBEC1	96	73.478	Ovis_aries
ENSCANG00000038359	APOBEC1	100	86.957	ENSPPAG00000027657	APOBEC1	97	86.957	Pan_paniscus
ENSCANG00000038359	APOBEC1	100	82.174	ENSPPRG00000012182	APOBEC1	97	82.174	Panthera_pardus
ENSCANG00000038359	APOBEC1	100	82.174	ENSPTIG00000020280	APOBEC1	97	82.174	Panthera_tigris_altaica
ENSCANG00000038359	APOBEC1	100	93.478	ENSPTRG00000004614	APOBEC1	97	93.478	Pan_troglodytes
ENSCANG00000038359	APOBEC1	100	98.696	ENSPANG00000021027	APOBEC1	97	98.696	Papio_anubis
ENSCANG00000038359	APOBEC1	59	48.624	ENSPSIG00000012791	-	75	48.624	Pelodiscus_sinensis
ENSCANG00000038359	APOBEC1	100	42.672	ENSPSIG00000012568	-	97	42.672	Pelodiscus_sinensis
ENSCANG00000038359	APOBEC1	97	69.955	ENSPEMG00000023841	Apobec1	97	69.955	Peromyscus_maniculatus_bairdii
ENSCANG00000038359	APOBEC1	100	69.130	ENSPCIG00000023973	APOBEC1	97	69.130	Phascolarctos_cinereus
ENSCANG00000038359	APOBEC1	100	93.043	ENSPPYG00000004228	APOBEC1	93	93.043	Pongo_abelii
ENSCANG00000038359	APOBEC1	79	79.558	ENSPCAG00000008733	APOBEC1	97	79.558	Procavia_capensis
ENSCANG00000038359	APOBEC1	97	84.685	ENSPCOG00000013957	APOBEC1	98	84.685	Propithecus_coquereli
ENSCANG00000038359	APOBEC1	100	64.783	ENSPVAG00000010709	APOBEC1	97	64.783	Pteropus_vampyrus
ENSCANG00000038359	APOBEC1	97	68.919	ENSRNOG00000015411	Apobec1	97	68.919	Rattus_norvegicus
ENSCANG00000038359	APOBEC1	100	97.826	ENSRBIG00000031161	APOBEC1	97	97.826	Rhinopithecus_bieti
ENSCANG00000038359	APOBEC1	100	97.391	ENSRROG00000033576	APOBEC1	100	96.859	Rhinopithecus_roxellana
ENSCANG00000038359	APOBEC1	75	93.064	ENSSBOG00000030587	APOBEC1	98	93.064	Saimiri_boliviensis_boliviensis
ENSCANG00000038359	APOBEC1	99	70.044	ENSSHAG00000008925	APOBEC1	99	70.044	Sarcophilus_harrisii
ENSCANG00000038359	APOBEC1	75	68.023	ENSSARG00000000032	-	100	68.023	Sorex_araneus
ENSCANG00000038359	APOBEC1	57	72.519	ENSSARG00000011972	-	99	72.519	Sorex_araneus
ENSCANG00000038359	APOBEC1	88	40.865	ENSSPUG00000009044	-	79	40.865	Sphenodon_punctatus
ENSCANG00000038359	APOBEC1	100	79.565	ENSSSCG00000000668	APOBEC1	97	79.565	Sus_scrofa
ENSCANG00000038359	APOBEC1	62	50.000	ENSTGUG00000013118	-	99	50.000	Taeniopygia_guttata
ENSCANG00000038359	APOBEC1	96	77.376	ENSTBEG00000010043	APOBEC1	94	77.376	Tupaia_belangeri
ENSCANG00000038359	APOBEC1	79	77.901	ENSTTRG00000014015	APOBEC1	97	77.901	Tursiops_truncatus
ENSCANG00000038359	APOBEC1	100	79.565	ENSUAMG00000011636	APOBEC1	94	79.565	Ursus_americanus
ENSCANG00000038359	APOBEC1	100	79.565	ENSUMAG00000016552	APOBEC1	94	79.565	Ursus_maritimus
ENSCANG00000038359	APOBEC1	100	76.522	ENSVPAG00000001343	APOBEC1	97	76.522	Vicugna_pacos
ENSCANG00000038359	APOBEC1	100	80.870	ENSVVUG00000010522	APOBEC1	97	80.870	Vulpes_vulpes