EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCANG00000039909 (Gene tree)
Gene ID
105509404
Gene Symbol
LSM5
Alias
YER146W
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Colobus_angolensis_palliatus
Status
putative
Strand
Plus strand
Length
10466 bases
Position
chrKN980218.1:6224488-6234953
Accession
105509404
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCANP00000032491LSMPF01423.223.4e-2011
ENSCANP00000032482LSMPF01423.222e-1611
ENSCANP00000032500LSMPF01423.221.9e-0711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCANT00000055705LSM5-2012408XM_011938624ENSCANP0000003248262 (aa)XP_011794014A0A2K5JUI5
ENSCANT00000055715LSM5-2022230XM_011938623ENSCANP0000003249191 (aa)XP_011794013A0A2K5JUD9
ENSCANT00000055724LSM5-203195-ENSCANP0000003250064 (aa)-A0A2K5JUM0
Gene Model
Click here to download ENSCANG00000039909's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSCANG00000039909's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCANG00000039909LSM58234.667ENSCANG00000018782-7434.667
ENSCANG00000039909LSM58234.667ENSCANG00000033944-7434.667
ENSCANG00000039909LSM57739.583ENSCANG00000036317-7732.877
ENSCANG00000039909LSM58233.333ENSCANG00000038037-7433.333
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCANG00000039909LSM5100100.000ENSG00000106355LSM5100100.000Homo_sapiens
ENSCANG00000039909LSM510096.774ENSAPOG00000011743LSM510096.774Acanthochromis_polyacanthus
ENSCANG00000039909LSM510096.774ENSAPOG00000020779LSM510095.604Acanthochromis_polyacanthus
ENSCANG00000039909LSM5100100.000ENSAMEG00000006700LSM5100100.000Ailuropoda_melanoleuca
ENSCANG00000039909LSM57393.333ENSACIG00000019185lsm58093.333Amphilophus_citrinellus
ENSCANG00000039909LSM510096.774ENSAOCG00000001636lsm510095.604Amphiprion_ocellaris
ENSCANG00000039909LSM510096.774ENSAPEG00000008151lsm510095.604Amphiprion_percula
ENSCANG00000039909LSM510096.774ENSAPEG00000008201lsm510096.774Amphiprion_percula
ENSCANG00000039909LSM59093.902ENSATEG00000020470lsm57693.333Anabas_testudineus
ENSCANG00000039909LSM597100.000ENSAPLG00000008171LSM5100100.000Anas_platyrhynchos
ENSCANG00000039909LSM58192.308ENSACAG00000009530LSM593100.000Anolis_carolinensis
ENSCANG00000039909LSM510090.323ENSANAG00000037758-10079.121Aotus_nancymaae
ENSCANG00000039909LSM5100100.000ENSANAG00000034409-10098.901Aotus_nancymaae
ENSCANG00000039909LSM510095.161ENSANAG00000024192-9495.556Aotus_nancymaae
ENSCANG00000039909LSM510096.774ENSACLG00000012891lsm59995.402Astatotilapia_calliptera
ENSCANG00000039909LSM510081.915ENSAMXG00000035543lsm510081.915Astyanax_mexicanus
ENSCANG00000039909LSM5100100.000ENSBTAG00000002332LSM5100100.000Bos_taurus
ENSCANG00000039909LSM59770.968ENSBTAG00000052014-7570.968Bos_taurus
ENSCANG00000039909LSM510079.032WBGene00003079lsm-510073.626Caenorhabditis_elegans
ENSCANG00000039909LSM510087.097ENSCJAG00000005678-10086.667Callithrix_jacchus
ENSCANG00000039909LSM5100100.000ENSCJAG00000047379LSM510096.875Callithrix_jacchus
ENSCANG00000039909LSM510098.901ENSCAFG00000019261-10098.901Canis_familiaris
ENSCANG00000039909LSM58198.077ENSCAFG00000030781-6098.077Canis_familiaris
ENSCANG00000039909LSM5100100.000ENSCAFG00020004946LSM5100100.000Canis_lupus_dingo
ENSCANG00000039909LSM510097.802ENSCHIG00000004079-10097.802Capra_hircus
ENSCANG00000039909LSM5100100.000ENSCHIG00000024539LSM5100100.000Capra_hircus
ENSCANG00000039909LSM58175.676ENSCHIG00000021428-9572.727Capra_hircus
ENSCANG00000039909LSM510088.710ENSTSYG00000026530-9181.319Carlito_syrichta
ENSCANG00000039909LSM510074.725ENSTSYG00000036637-10074.725Carlito_syrichta
ENSCANG00000039909LSM5100100.000ENSTSYG00000006449-100100.000Carlito_syrichta
ENSCANG00000039909LSM510086.813ENSTSYG00000028728-10086.813Carlito_syrichta
ENSCANG00000039909LSM510090.323ENSCAPG00000006980LSM510092.000Cavia_aperea
ENSCANG00000039909LSM5100100.000ENSCPOG00000036386LSM5100100.000Cavia_porcellus
ENSCANG00000039909LSM510098.901ENSCCAG00000000821-10098.901Cebus_capucinus
ENSCANG00000039909LSM5100100.000ENSCCAG00000037808-100100.000Cebus_capucinus
ENSCANG00000039909LSM59786.667ENSCCAG00000037334-10068.132Cebus_capucinus
ENSCANG00000039909LSM510098.387ENSCCAG00000032123-10097.802Cebus_capucinus
ENSCANG00000039909LSM510093.548ENSCCAG00000032792-10081.319Cebus_capucinus
ENSCANG00000039909LSM59988.889ENSCATG00000014790-9598.182Cercocebus_atys
ENSCANG00000039909LSM5100100.000ENSCATG00000040218LSM5100100.000Cercocebus_atys
ENSCANG00000039909LSM510083.516ENSCLAG00000005062-9083.516Chinchilla_lanigera
ENSCANG00000039909LSM5100100.000ENSCLAG00000000202LSM5100100.000Chinchilla_lanigera
ENSCANG00000039909LSM582100.000ENSCHOG00000005335LSM599100.000Choloepus_hoffmanni
ENSCANG00000039909LSM5100100.000ENSCPBG00000013685LSM5100100.000Chrysemys_picta_bellii
ENSCANG00000039909LSM510090.323ENSCING00000020625-9988.764Ciona_intestinalis
ENSCANG00000039909LSM510090.323ENSCSAVG00000001439-9888.372Ciona_savignyi
ENSCANG00000039909LSM5100100.000ENSCGRG00001015461Lsm5100100.000Cricetulus_griseus_chok1gshd
ENSCANG00000039909LSM5100100.000ENSCGRG00000007677Lsm5100100.000Cricetulus_griseus_crigri
ENSCANG00000039909LSM57393.333ENSCSEG00000015286lsm57693.333Cynoglossus_semilaevis
ENSCANG00000039909LSM510096.774ENSCVAG00000004262lsm510094.505Cyprinodon_variegatus
ENSCANG00000039909LSM510096.774ENSDARG00000071573lsm510096.774Danio_rerio
ENSCANG00000039909LSM59689.655ENSDNOG00000049495-9689.655Dasypus_novemcinctus
ENSCANG00000039909LSM5100100.000ENSDNOG00000034958LSM5100100.000Dasypus_novemcinctus
ENSCANG00000039909LSM5100100.000ENSDORG00000009422Lsm5100100.000Dipodomys_ordii
ENSCANG00000039909LSM59885.246FBgn0035675CG66109581.395Drosophila_melanogaster
ENSCANG00000039909LSM59975.556ENSETEG00000001469-9975.556Echinops_telfairi
ENSCANG00000039909LSM510079.121ENSETEG00000010651-10079.121Echinops_telfairi
ENSCANG00000039909LSM5100100.000ENSETEG00000018068LSM5100100.000Echinops_telfairi
ENSCANG00000039909LSM510079.032ENSETEG00000016074-9881.081Echinops_telfairi
ENSCANG00000039909LSM59867.416ENSETEG00000000777-9967.416Echinops_telfairi
ENSCANG00000039909LSM510091.935ENSEBUG00000008540lsm510091.209Eptatretus_burgeri
ENSCANG00000039909LSM5100100.000ENSEASG00005003500LSM5100100.000Equus_asinus_asinus
ENSCANG00000039909LSM510085.714ENSECAG00000018445LSM510085.714Equus_caballus
ENSCANG00000039909LSM59493.103ENSEEUG00000004102LSM59793.103Erinaceus_europaeus
ENSCANG00000039909LSM510096.774ENSELUG00000007792lsm510094.505Esox_lucius
ENSCANG00000039909LSM5100100.000ENSFCAG00000000230LSM5100100.000Felis_catus
ENSCANG00000039909LSM5100100.000ENSFALG00000001892LSM592100.000Ficedula_albicollis
ENSCANG00000039909LSM510070.968ENSFDAG00000008685-10065.934Fukomys_damarensis
ENSCANG00000039909LSM5100100.000ENSFDAG00000008767LSM5100100.000Fukomys_damarensis
ENSCANG00000039909LSM510082.258ENSFHEG00000004011lsm59676.667Fundulus_heteroclitus
ENSCANG00000039909LSM59896.721ENSGMOG00000018235lsm510094.444Gadus_morhua
ENSCANG00000039909LSM5100100.000ENSGALG00000041625LSM510098.901Gallus_gallus
ENSCANG00000039909LSM510096.774ENSGAFG00000016824lsm510096.774Gambusia_affinis
ENSCANG00000039909LSM510096.774ENSGACG00000005528lsm510095.604Gasterosteus_aculeatus
ENSCANG00000039909LSM5100100.000ENSGAGG00000015593LSM5100100.000Gopherus_agassizii
ENSCANG00000039909LSM5100100.000ENSGGOG00000043469LSM5100100.000Gorilla_gorilla
ENSCANG00000039909LSM510096.774ENSHBUG00000013773lsm59995.402Haplochromis_burtoni
ENSCANG00000039909LSM5100100.000ENSHGLG00000011765LSM5100100.000Heterocephalus_glaber_female
ENSCANG00000039909LSM5100100.000ENSHGLG00100015610LSM510096.703Heterocephalus_glaber_male
ENSCANG00000039909LSM57391.111ENSHCOG00000008288lsm57691.111Hippocampus_comes
ENSCANG00000039909LSM510096.774ENSIPUG00000021095LSM510093.407Ictalurus_punctatus
ENSCANG00000039909LSM510087.097ENSSTOG00000033886-9782.558Ictidomys_tridecemlineatus
ENSCANG00000039909LSM5100100.000ENSSTOG00000012662LSM5100100.000Ictidomys_tridecemlineatus
ENSCANG00000039909LSM58791.139ENSJJAG00000004475-10091.139Jaculus_jaculus
ENSCANG00000039909LSM5100100.000ENSJJAG00000012145-10097.802Jaculus_jaculus
ENSCANG00000039909LSM510079.032ENSJJAG00000016144-9270.330Jaculus_jaculus
ENSCANG00000039909LSM510095.161ENSKMAG00000021861lsm510094.505Kryptolebias_marmoratus
ENSCANG00000039909LSM510086.813ENSLBEG00000009235LSM57086.813Labrus_bergylta
ENSCANG00000039909LSM58687.273ENSLBEG00000017379lsm59087.273Labrus_bergylta
ENSCANG00000039909LSM510095.604ENSLACG00000022448LSM510095.604Latimeria_chalumnae
ENSCANG00000039909LSM510096.774ENSLOCG00000012903lsm510094.505Lepisosteus_oculatus
ENSCANG00000039909LSM59486.207ENSLAFG00000027938-10071.429Loxodonta_africana
ENSCANG00000039909LSM5100100.000ENSLAFG00000029579LSM5100100.000Loxodonta_africana
ENSCANG00000039909LSM510098.387ENSMFAG00000030152-10096.703Macaca_fascicularis
ENSCANG00000039909LSM5100100.000ENSMFAG00000038508LSM5100100.000Macaca_fascicularis
ENSCANG00000039909LSM59880.952ENSMFAG00000031187-8197.917Macaca_fascicularis
ENSCANG00000039909LSM5100100.000ENSMMUG00000045129-100100.000Macaca_mulatta
ENSCANG00000039909LSM59990.000ENSMMUG00000039822-10090.000Macaca_mulatta
ENSCANG00000039909LSM510098.387ENSMMUG00000030131-10096.703Macaca_mulatta
ENSCANG00000039909LSM5100100.000ENSMNEG00000015331LSM5100100.000Macaca_nemestrina
ENSCANG00000039909LSM510098.387ENSMNEG00000037935-10096.703Macaca_nemestrina
ENSCANG00000039909LSM5100100.000ENSMLEG00000024945LSM5100100.000Mandrillus_leucophaeus
ENSCANG00000039909LSM59888.764ENSMLEG00000034037-10088.764Mandrillus_leucophaeus
ENSCANG00000039909LSM510091.935ENSMAMG00000012869lsm510091.209Mastacembelus_armatus
ENSCANG00000039909LSM510096.774ENSMZEG00005019554lsm59995.402Maylandia_zebra
ENSCANG00000039909LSM5100100.000ENSMGAG00000012117LSM510098.901Meleagris_gallopavo
ENSCANG00000039909LSM5100100.000ENSMAUG00000008132-10098.901Mesocricetus_auratus
ENSCANG00000039909LSM5100100.000ENSMAUG00000012222Lsm5100100.000Mesocricetus_auratus
ENSCANG00000039909LSM59598.305ENSMICG00000033928-7798.305Microcebus_murinus
ENSCANG00000039909LSM5100100.000ENSMICG00000005353LSM5100100.000Microcebus_murinus
ENSCANG00000039909LSM5100100.000ENSMOCG00000012018Lsm5100100.000Microtus_ochrogaster
ENSCANG00000039909LSM510096.774ENSMMOG00000004026lsm58797.368Mola_mola
ENSCANG00000039909LSM5100100.000ENSMODG00000013274-100100.000Monodelphis_domestica
ENSCANG00000039909LSM510091.935ENSMALG00000010343lsm510091.935Monopterus_albus
ENSCANG00000039909LSM5100100.000MGP_CAROLIEiJ_G0028421Lsm5100100.000Mus_caroli
ENSCANG00000039909LSM5100100.000ENSMUSG00000091625Lsm5100100.000Mus_musculus
ENSCANG00000039909LSM5100100.000MGP_PahariEiJ_G0022171Lsm5100100.000Mus_pahari
ENSCANG00000039909LSM5100100.000MGP_SPRETEiJ_G0029423Lsm5100100.000Mus_spretus
ENSCANG00000039909LSM5100100.000ENSMLUG00000017028LSM5100100.000Myotis_lucifugus
ENSCANG00000039909LSM59978.889ENSNGAG00000022569-9678.889Nannospalax_galili
ENSCANG00000039909LSM510087.097ENSNGAG00000017707-10087.097Nannospalax_galili
ENSCANG00000039909LSM5100100.000ENSNGAG00000024142Lsm5100100.000Nannospalax_galili
ENSCANG00000039909LSM59296.491ENSNBRG00000011386lsm57696.491Neolamprologus_brichardi
ENSCANG00000039909LSM57291.304ENSNBRG00000009964LSM59891.304Neolamprologus_brichardi
ENSCANG00000039909LSM5100100.000ENSNLEG00000015268LSM5100100.000Nomascus_leucogenys
ENSCANG00000039909LSM5100100.000ENSOPRG00000002443LSM5100100.000Ochotona_princeps
ENSCANG00000039909LSM5100100.000ENSODEG00000019072-100100.000Octodon_degus
ENSCANG00000039909LSM5100100.000ENSODEG00000008258-100100.000Octodon_degus
ENSCANG00000039909LSM59458.621ENSOANG00000014540-10061.333Ornithorhynchus_anatinus
ENSCANG00000039909LSM5100100.000ENSOCUG00000029043LSM5100100.000Oryctolagus_cuniculus
ENSCANG00000039909LSM510095.161ENSORLG00000027725lsm55893.407Oryzias_latipes
ENSCANG00000039909LSM510095.161ENSORLG00020003019lsm58690.805Oryzias_latipes_hni
ENSCANG00000039909LSM510095.161ENSORLG00015003338lsm510093.407Oryzias_latipes_hsok
ENSCANG00000039909LSM510095.161ENSOMEG00000001078lsm510092.308Oryzias_melastigma
ENSCANG00000039909LSM5100100.000ENSOGAG00000013892LSM5100100.000Otolemur_garnettii
ENSCANG00000039909LSM5100100.000ENSOARG00000006944LSM5100100.000Ovis_aries
ENSCANG00000039909LSM5100100.000ENSPPAG00000003697-100100.000Pan_paniscus
ENSCANG00000039909LSM5100100.000ENSPPRG00000002550LSM5100100.000Panthera_pardus
ENSCANG00000039909LSM5100100.000ENSPTIG00000015604LSM5100100.000Panthera_tigris_altaica
ENSCANG00000039909LSM5100100.000ENSPTRG00000019057LSM5100100.000Pan_troglodytes
ENSCANG00000039909LSM510083.516ENSPTRG00000049488-10085.714Pan_troglodytes
ENSCANG00000039909LSM59990.000ENSPANG00000032538-10090.000Papio_anubis
ENSCANG00000039909LSM510098.387ENSPANG00000033477-10095.604Papio_anubis
ENSCANG00000039909LSM5100100.000ENSPANG00000032179-100100.000Papio_anubis
ENSCANG00000039909LSM510096.774ENSPKIG00000011910lsm510094.505Paramormyrops_kingsleyae
ENSCANG00000039909LSM597100.000ENSPSIG00000014796LSM5100100.000Pelodiscus_sinensis
ENSCANG00000039909LSM510096.774ENSPMGG00000011699lsm510096.774Periophthalmus_magnuspinnatus
ENSCANG00000039909LSM510087.500ENSPEMG00000019994-10087.500Peromyscus_maniculatus_bairdii
ENSCANG00000039909LSM510074.194ENSPEMG00000022375-10072.527Peromyscus_maniculatus_bairdii
ENSCANG00000039909LSM510096.774ENSPFOG00000001433lsm510094.505Poecilia_formosa
ENSCANG00000039909LSM510096.774ENSPLAG00000009665lsm510094.505Poecilia_latipinna
ENSCANG00000039909LSM510096.774ENSPMEG00000022265lsm510094.505Poecilia_mexicana
ENSCANG00000039909LSM510096.774ENSPREG00000022452lsm510096.774Poecilia_reticulata
ENSCANG00000039909LSM510096.703ENSPPYG00000017661LSM510096.703Pongo_abelii
ENSCANG00000039909LSM589100.000ENSPCAG00000013740LSM5100100.000Procavia_capensis
ENSCANG00000039909LSM5100100.000ENSPVAG00000009786LSM5100100.000Pteropus_vampyrus
ENSCANG00000039909LSM510096.774ENSPNYG00000022236lsm59995.402Pundamilia_nyererei
ENSCANG00000039909LSM510096.774ENSPNAG00000001887lsm510093.407Pygocentrus_nattereri
ENSCANG00000039909LSM5100100.000ENSRNOG00000042126Lsm5100100.000Rattus_norvegicus
ENSCANG00000039909LSM510098.413ENSRNOG00000027305AABR07065089.110095.652Rattus_norvegicus
ENSCANG00000039909LSM5100100.000ENSRBIG00000027803-100100.000Rhinopithecus_bieti
ENSCANG00000039909LSM5100100.000ENSRBIG00000030714-100100.000Rhinopithecus_bieti
ENSCANG00000039909LSM5100100.000ENSRBIG00000030340-100100.000Rhinopithecus_bieti
ENSCANG00000039909LSM510098.901ENSRBIG00000024431-10098.901Rhinopithecus_bieti
ENSCANG00000039909LSM5100100.000ENSRROG00000023884-100100.000Rhinopithecus_roxellana
ENSCANG00000039909LSM5100100.000ENSRROG00000004655-100100.000Rhinopithecus_roxellana
ENSCANG00000039909LSM5100100.000ENSRROG00000042782-100100.000Rhinopithecus_roxellana
ENSCANG00000039909LSM59452.381YER146W-8851.220Saccharomyces_cerevisiae
ENSCANG00000039909LSM510098.387ENSSBOG00000019124-10097.802Saimiri_boliviensis_boliviensis
ENSCANG00000039909LSM510088.710ENSSBOG00000034794-10078.022Saimiri_boliviensis_boliviensis
ENSCANG00000039909LSM5100100.000ENSSBOG00000012312LSM5100100.000Saimiri_boliviensis_boliviensis
ENSCANG00000039909LSM510096.774ENSSFOG00015010099lsm510094.505Scleropages_formosus
ENSCANG00000039909LSM57393.333ENSSMAG00000007895lsm57693.333Scophthalmus_maximus
ENSCANG00000039909LSM510096.774ENSSDUG00000010762lsm510096.774Seriola_dumerili
ENSCANG00000039909LSM59477.586ENSSLDG00000008014-9378.205Seriola_lalandi_dorsalis
ENSCANG00000039909LSM510096.774ENSSLDG00000025242lsm510094.505Seriola_lalandi_dorsalis
ENSCANG00000039909LSM510071.429ENSSARG00000003330LSM510071.429Sorex_araneus
ENSCANG00000039909LSM510098.387ENSSPUG00000002690LSM510098.387Sphenodon_punctatus
ENSCANG00000039909LSM57393.333ENSSPAG00000005435lsm57693.333Stegastes_partitus
ENSCANG00000039909LSM57888.000ENSSSCG00000029661-9688.406Sus_scrofa
ENSCANG00000039909LSM5100100.000ENSSSCG00000026064-100100.000Sus_scrofa
ENSCANG00000039909LSM5100100.000ENSTGUG00000017539LSM510096.703Taeniopygia_guttata
ENSCANG00000039909LSM58687.952ENSTRUG00000017749lsm56487.952Takifugu_rubripes
ENSCANG00000039909LSM510095.161ENSTNIG00000008695lsm59995.402Tetraodon_nigroviridis
ENSCANG00000039909LSM5100100.000ENSTBEG00000004876LSM5100100.000Tupaia_belangeri
ENSCANG00000039909LSM5100100.000ENSTTRG00000004237LSM5100100.000Tursiops_truncatus
ENSCANG00000039909LSM581100.000ENSUAMG00000009786LSM568100.000Ursus_americanus
ENSCANG00000039909LSM510098.901ENSUMAG00000002625LSM56598.901Ursus_maritimus
ENSCANG00000039909LSM5100100.000ENSVPAG00000009985LSM5100100.000Vicugna_pacos
ENSCANG00000039909LSM5100100.000ENSVVUG00000021311LSM5100100.000Vulpes_vulpes
ENSCANG00000039909LSM59095.122ENSXETG00000026465lsm510095.122Xenopus_tropicalis
ENSCANG00000039909LSM510096.774ENSXCOG00000015348lsm510096.774Xiphophorus_couchianus
ENSCANG00000039909LSM510096.774ENSXMAG00000029988lsm510094.505Xiphophorus_maculatus

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