EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAPG00000000555 (Gene tree)
Gene ID: -
Gene Symbol: PABPC4L
Alias: -
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Minus strand
Length: 1008 bases
Position: chrAVPZ01000778.1:13988491-13989498
Accession: 31955
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000000572	RRM_5	PF13893.6	4.7e-14	1	3
ENSCAPP00000000572	RRM_5	PF13893.6	4.7e-14	2	3
ENSCAPP00000000572	RRM_5	PF13893.6	4.7e-14	3	3
ENSCAPP00000000572	RRM_1	PF00076.22	2e-73	1	4
ENSCAPP00000000572	RRM_1	PF00076.22	2e-73	2	4
ENSCAPP00000000572	RRM_1	PF00076.22	2e-73	3	4
ENSCAPP00000000572	RRM_1	PF00076.22	2e-73	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000000656	PABPC4L-201	1008	-	ENSCAPP00000000572	335 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000000555's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000000555's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAPG00000000555	PABPC4L	99	64.873	ENSCAPG00000013098	PABPC1	58	64.873
ENSCAPG00000000555	PABPC4L	99	58.192	ENSCAPG00000010714	PABPC5	82	58.192
ENSCAPG00000000555	PABPC4L	69	38.961	ENSCAPG00000005923	RBM3	52	38.961
ENSCAPG00000000555	PABPC4L	62	33.333	ENSCAPG00000010217	RBFOX3	67	33.333
ENSCAPG00000000555	PABPC4L	100	58.472	ENSCAPG00000014519	PABPC1L	59	58.472
ENSCAPG00000000555	PABPC4L	99	31.298	ENSCAPG00000017278	TIA1	86	31.298
ENSCAPG00000000555	PABPC4L	100	68.657	ENSCAPG00000015984	PABPC4	62	68.657

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000000555	PABPC4L	100	80.896	ENSG00000254535	PABPC4L	98	80.896	Homo_sapiens
ENSCAPG00000000555	PABPC4L	100	80.000	ENSANAG00000017199	PABPC4L	85	80.000	Aotus_nancymaae
ENSCAPG00000000555	PABPC4L	100	79.341	ENSBTAG00000046902	PABPC4L	97	79.341	Bos_taurus
ENSCAPG00000000555	PABPC4L	100	79.701	ENSCJAG00000045332	PABPC4L	85	79.701	Callithrix_jacchus
ENSCAPG00000000555	PABPC4L	100	71.171	ENSCAFG00020019182	-	52	71.171	Canis_lupus_dingo
ENSCAPG00000000555	PABPC4L	100	79.341	ENSCHIG00000007231	PABPC4L	97	79.341	Capra_hircus
ENSCAPG00000000555	PABPC4L	98	99.694	ENSCPOG00000033167	PABPC4L	91	99.694	Cavia_porcellus
ENSCAPG00000000555	PABPC4L	100	79.701	ENSCCAG00000031681	PABPC4L	85	79.701	Cebus_capucinus
ENSCAPG00000000555	PABPC4L	100	83.582	ENSCLAG00000017628	PABPC4L	98	83.582	Chinchilla_lanigera
ENSCAPG00000000555	PABPC4L	100	79.641	ENSCANG00000037677	PABPC4L	98	79.641	Colobus_angolensis_palliatus
ENSCAPG00000000555	PABPC4L	100	73.731	ENSCGRG00001002070	Pabpc4l	98	73.731	Cricetulus_griseus_chok1gshd
ENSCAPG00000000555	PABPC4L	100	73.731	ENSCGRG00000020086	Pabpc4l	98	73.731	Cricetulus_griseus_crigri
ENSCAPG00000000555	PABPC4L	100	79.104	ENSDNOG00000031077	PABPC4L	93	79.104	Dasypus_novemcinctus
ENSCAPG00000000555	PABPC4L	100	78.144	ENSEASG00005007883	PABPC4L	97	78.144	Equus_asinus_asinus
ENSCAPG00000000555	PABPC4L	100	78.743	ENSECAG00000031416	PABPC4L	97	78.743	Equus_caballus
ENSCAPG00000000555	PABPC4L	100	80.240	ENSFCAG00000028270	PABPC4L	97	80.240	Felis_catus
ENSCAPG00000000555	PABPC4L	100	83.234	ENSFDAG00000019606	PABPC4L	98	83.234	Fukomys_damarensis
ENSCAPG00000000555	PABPC4L	100	80.299	ENSGGOG00000024991	PABPC4L	98	80.299	Gorilla_gorilla
ENSCAPG00000000555	PABPC4L	100	83.234	ENSHGLG00000020104	PABPC4L	98	83.234	Heterocephalus_glaber_female
ENSCAPG00000000555	PABPC4L	100	83.234	ENSHGLG00100020648	PABPC4L	98	83.234	Heterocephalus_glaber_male
ENSCAPG00000000555	PABPC4L	100	75.893	ENSSTOG00000019472	PABPC4L	98	75.893	Ictidomys_tridecemlineatus
ENSCAPG00000000555	PABPC4L	100	76.347	ENSJJAG00000004090	Pabpc4l	97	76.347	Jaculus_jaculus
ENSCAPG00000000555	PABPC4L	100	74.627	ENSMAUG00000016313	Pabpc4l	98	74.627	Mesocricetus_auratus
ENSCAPG00000000555	PABPC4L	100	81.791	ENSMICG00000029683	PABPC4L	98	81.791	Microcebus_murinus
ENSCAPG00000000555	PABPC4L	100	76.418	ENSMOCG00000007551	Pabpc4l	98	76.418	Microtus_ochrogaster
ENSCAPG00000000555	PABPC4L	100	73.134	MGP_CAROLIEiJ_G0024968	Pabpc4l	98	73.134	Mus_caroli
ENSCAPG00000000555	PABPC4L	100	72.836	ENSMUSG00000090919	Pabpc4l	98	72.836	Mus_musculus
ENSCAPG00000000555	PABPC4L	100	72.836	MGP_PahariEiJ_G0026409	Pabpc4l	98	72.836	Mus_pahari
ENSCAPG00000000555	PABPC4L	100	72.239	MGP_SPRETEiJ_G0025903	Pabpc4l	98	72.239	Mus_spretus
ENSCAPG00000000555	PABPC4L	100	72.156	ENSMLUG00000008254	PABPC4L	97	72.156	Myotis_lucifugus
ENSCAPG00000000555	PABPC4L	100	77.015	ENSNGAG00000001502	Pabpc4l	98	77.015	Nannospalax_galili
ENSCAPG00000000555	PABPC4L	100	80.597	ENSNLEG00000019300	PABPC4L	98	80.597	Nomascus_leucogenys
ENSCAPG00000000555	PABPC4L	100	75.224	ENSOGAG00000026166	PABPC4L	98	75.224	Otolemur_garnettii
ENSCAPG00000000555	PABPC4L	100	80.903	ENSPPAG00000043745	PABPC4L	89	80.903	Pan_paniscus
ENSCAPG00000000555	PABPC4L	100	80.240	ENSPPRG00000018628	PABPC4L	97	80.240	Panthera_pardus
ENSCAPG00000000555	PABPC4L	100	80.240	ENSPTIG00000010106	PABPC4L	97	80.240	Panthera_tigris_altaica
ENSCAPG00000000555	PABPC4L	100	80.903	ENSPTRG00000045513	-	80	80.903	Pan_troglodytes
ENSCAPG00000000555	PABPC4L	100	75.224	ENSPEMG00000012565	Pabpc4l	98	75.224	Peromyscus_maniculatus_bairdii
ENSCAPG00000000555	PABPC4L	100	81.493	ENSPCOG00000025578	PABPC4L	98	81.493	Propithecus_coquereli
ENSCAPG00000000555	PABPC4L	100	73.134	ENSRNOG00000029749	Pabpc4l	98	73.134	Rattus_norvegicus
ENSCAPG00000000555	PABPC4L	100	78.443	ENSRBIG00000030229	PABPC4L	98	78.443	Rhinopithecus_bieti
ENSCAPG00000000555	PABPC4L	100	78.144	ENSRROG00000020367	PABPC4L	98	78.144	Rhinopithecus_roxellana
ENSCAPG00000000555	PABPC4L	100	80.299	ENSSBOG00000016382	PABPC4L	98	80.299	Saimiri_boliviensis_boliviensis
ENSCAPG00000000555	PABPC4L	100	73.353	ENSSSCG00000009067	PABPC4L	97	73.353	Sus_scrofa
ENSCAPG00000000555	PABPC4L	100	79.641	ENSUAMG00000001289	PABPC4L	97	79.641	Ursus_americanus
ENSCAPG00000000555	PABPC4L	100	79.641	ENSUMAG00000014887	PABPC4L	97	79.641	Ursus_maritimus
ENSCAPG00000000555	PABPC4L	95	71.756	ENSVVUG00000011060	-	72	71.756	Vulpes_vulpes