EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAPG00000001882 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Minus strand
Length: 15001 bases
Position: chrAVPZ01000578.1:9141601-9156601
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000001157	RNA_pol_Rpb1_5	PF04998.17	3.9e-101	1	1
ENSCAPP00000001146	RNA_pol_Rpb1_5	PF04998.17	4.9e-101	1	1
ENSCAPP00000001146	RNA_pol_Rpb1_R	PF05001.13	5e-24	1	19
ENSCAPP00000001146	RNA_pol_Rpb1_R	PF05001.13	5e-24	2	19
ENSCAPP00000001146	RNA_pol_Rpb1_R	PF05001.13	5e-24	3	19
ENSCAPP00000001146	RNA_pol_Rpb1_R	PF05001.13	5e-24	4	19
ENSCAPP00000001146	RNA_pol_Rpb1_R	PF05001.13	5e-24	5	19
ENSCAPP00000001146	RNA_pol_Rpb1_R	PF05001.13	5e-24	6	19
ENSCAPP00000001146	RNA_pol_Rpb1_R	PF05001.13	5e-24	7	19
ENSCAPP00000001146	RNA_pol_Rpb1_R	PF05001.13	5e-24	8	19
ENSCAPP00000001146	RNA_pol_Rpb1_R	PF05001.13	5e-24	9	19
ENSCAPP00000001146	RNA_pol_Rpb1_R	PF05001.13	5e-24	10	19
ENSCAPP00000001146	RNA_pol_Rpb1_R	PF05001.13	5e-24	11	19
ENSCAPP00000001146	RNA_pol_Rpb1_R	PF05001.13	5e-24	12	19
ENSCAPP00000001146	RNA_pol_Rpb1_R	PF05001.13	5e-24	13	19
ENSCAPP00000001146	RNA_pol_Rpb1_R	PF05001.13	5e-24	14	19
ENSCAPP00000001146	RNA_pol_Rpb1_R	PF05001.13	5e-24	15	19
ENSCAPP00000001146	RNA_pol_Rpb1_R	PF05001.13	5e-24	16	19
ENSCAPP00000001146	RNA_pol_Rpb1_R	PF05001.13	5e-24	17	19
ENSCAPP00000001146	RNA_pol_Rpb1_R	PF05001.13	5e-24	18	19
ENSCAPP00000001146	RNA_pol_Rpb1_R	PF05001.13	5e-24	19	19
ENSCAPP00000001157	RNA_pol_Rpb1_R	PF05001.13	4.9e-19	1	23
ENSCAPP00000001157	RNA_pol_Rpb1_R	PF05001.13	4.9e-19	2	23
ENSCAPP00000001157	RNA_pol_Rpb1_R	PF05001.13	4.9e-19	3	23
ENSCAPP00000001157	RNA_pol_Rpb1_R	PF05001.13	4.9e-19	4	23
ENSCAPP00000001157	RNA_pol_Rpb1_R	PF05001.13	4.9e-19	5	23
ENSCAPP00000001157	RNA_pol_Rpb1_R	PF05001.13	4.9e-19	6	23
ENSCAPP00000001157	RNA_pol_Rpb1_R	PF05001.13	4.9e-19	7	23
ENSCAPP00000001157	RNA_pol_Rpb1_R	PF05001.13	4.9e-19	8	23
ENSCAPP00000001157	RNA_pol_Rpb1_R	PF05001.13	4.9e-19	9	23
ENSCAPP00000001157	RNA_pol_Rpb1_R	PF05001.13	4.9e-19	10	23
ENSCAPP00000001157	RNA_pol_Rpb1_R	PF05001.13	4.9e-19	11	23
ENSCAPP00000001157	RNA_pol_Rpb1_R	PF05001.13	4.9e-19	12	23
ENSCAPP00000001157	RNA_pol_Rpb1_R	PF05001.13	4.9e-19	13	23
ENSCAPP00000001157	RNA_pol_Rpb1_R	PF05001.13	4.9e-19	14	23
ENSCAPP00000001157	RNA_pol_Rpb1_R	PF05001.13	4.9e-19	15	23
ENSCAPP00000001157	RNA_pol_Rpb1_R	PF05001.13	4.9e-19	16	23
ENSCAPP00000001157	RNA_pol_Rpb1_R	PF05001.13	4.9e-19	17	23
ENSCAPP00000001157	RNA_pol_Rpb1_R	PF05001.13	4.9e-19	18	23
ENSCAPP00000001157	RNA_pol_Rpb1_R	PF05001.13	4.9e-19	19	23
ENSCAPP00000001157	RNA_pol_Rpb1_R	PF05001.13	4.9e-19	20	23
ENSCAPP00000001157	RNA_pol_Rpb1_R	PF05001.13	4.9e-19	21	23
ENSCAPP00000001157	RNA_pol_Rpb1_R	PF05001.13	4.9e-19	22	23
ENSCAPP00000001157	RNA_pol_Rpb1_R	PF05001.13	4.9e-19	23	23
ENSCAPP00000001157	RNA_pol_Rpb1_4	PF05000.17	2.4e-38	1	1
ENSCAPP00000001146	RNA_pol_Rpb1_4	PF05000.17	2.5e-38	1	1
ENSCAPP00000001146	RNA_pol_Rpb1_2	PF00623.20	6.3e-75	1	1
ENSCAPP00000001157	RNA_pol_Rpb1_2	PF00623.20	6.9e-75	1	1
ENSCAPP00000001146	RNA_pol_Rpb1_3	PF04983.18	3e-50	1	1
ENSCAPP00000001157	RNA_pol_Rpb1_3	PF04983.18	3.3e-50	1	1
ENSCAPP00000001146	RNA_pol_Rpb1_1	PF04997.12	5.8e-103	1	1
ENSCAPP00000001157	RNA_pol_Rpb1_1	PF04997.12	1.1e-102	1	1
ENSCAPP00000001157	RNA_pol_Rpb1_7	PF04990.12	1.4e-54	1	1
ENSCAPP00000001146	RNA_pol_Rpb1_7	PF04990.12	6.6e-48	1	1
ENSCAPP00000001157	RNA_pol_Rpb1_6	PF04992.14	5.3e-69	1	1
ENSCAPP00000001146	RNA_pol_Rpb1_6	PF04992.14	1.6e-68	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000002281	-	5415	-	ENSCAPP00000001157	1804 (aa)	-	-
ENSCAPT00000002242	-	5367	-	ENSCAPP00000001146	1788 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000001882's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000001882's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAPG00000001882	-	71	39.495	ENSCAPG00000016031	POLR3A	89	39.495

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000001882	-	93	93.552	ENSAPOG00000006552	polr2a	90	90.229	Acanthochromis_polyacanthus
ENSCAPG00000001882	-	98	98.293	ENSAMEG00000016265	-	98	95.394	Ailuropoda_melanoleuca
ENSCAPG00000001882	-	100	90.337	ENSACIG00000015982	polr2a	98	89.216	Amphilophus_citrinellus
ENSCAPG00000001882	-	97	93.616	ENSAOCG00000004255	polr2a	95	89.043	Amphiprion_ocellaris
ENSCAPG00000001882	-	100	93.616	ENSAPEG00000012623	polr2a	98	91.051	Amphiprion_percula
ENSCAPG00000001882	-	100	93.489	ENSATEG00000019644	polr2a	98	90.939	Anabas_testudineus
ENSCAPG00000001882	-	98	96.960	ENSACAG00000014561	POLR2A	98	94.219	Anolis_carolinensis
ENSCAPG00000001882	-	98	98.543	ENSANAG00000020093	-	98	95.609	Aotus_nancymaae
ENSCAPG00000001882	-	100	93.300	ENSACLG00000006735	polr2a	98	90.773	Astatotilapia_calliptera
ENSCAPG00000001882	-	100	94.058	ENSAMXG00000020046	polr2a	98	91.440	Astyanax_mexicanus
ENSCAPG00000001882	-	98	98.543	ENSBTAG00000046765	POLR2A	98	95.609	Bos_taurus
ENSCAPG00000001882	-	99	70.729	WBGene00000123	ama-1	98	69.291	Caenorhabditis_elegans
ENSCAPG00000001882	-	98	98.607	ENSCAFG00000016532	POLR2A	98	99.804	Canis_familiaris
ENSCAPG00000001882	-	98	97.468	ENSCAFG00020007929	-	98	94.667	Canis_lupus_dingo
ENSCAPG00000001882	-	98	98.543	ENSCHIG00000027173	-	98	95.609	Capra_hircus
ENSCAPG00000001882	-	98	99.143	ENSTSYG00000012803	-	98	93.441	Carlito_syrichta
ENSCAPG00000001882	-	100	99.889	ENSCPOG00000014812	-	98	99.889	Cavia_porcellus
ENSCAPG00000001882	-	98	98.543	ENSCCAG00000020938	-	98	95.609	Cebus_capucinus
ENSCAPG00000001882	-	98	98.480	ENSCATG00000013680	-	98	95.553	Cercocebus_atys
ENSCAPG00000001882	-	98	98.733	ENSCLAG00000012196	-	98	95.775	Chinchilla_lanigera
ENSCAPG00000001882	-	98	89.113	ENSCSAG00000011644	-	98	87.341	Chlorocebus_sabaeus
ENSCAPG00000001882	-	99	91.429	ENSCPBG00000012697	POLR2A	98	91.429	Chrysemys_picta_bellii
ENSCAPG00000001882	-	99	73.483	ENSCING00000007884	-	95	77.893	Ciona_intestinalis
ENSCAPG00000001882	-	98	76.027	ENSCSAVG00000008334	-	100	79.279	Ciona_savignyi
ENSCAPG00000001882	-	98	97.657	ENSCANG00000010622	-	98	94.830	Colobus_angolensis_palliatus
ENSCAPG00000001882	-	98	93.006	ENSCGRG00001003538	Polr2a	98	90.038	Cricetulus_griseus_chok1gshd
ENSCAPG00000001882	-	87	95.723	ENSCGRG00000012105	Polr2a	96	91.382	Cricetulus_griseus_crigri
ENSCAPG00000001882	-	100	92.920	ENSCSEG00000002635	polr2a	99	90.439	Cynoglossus_semilaevis
ENSCAPG00000001882	-	100	93.679	ENSCVAG00000005156	polr2a	98	91.106	Cyprinodon_variegatus
ENSCAPG00000001882	-	100	93.742	ENSDARG00000099966	polr2a	99	86.730	Danio_rerio
ENSCAPG00000001882	-	99	92.692	ENSDNOG00000016482	-	98	92.692	Dasypus_novemcinctus
ENSCAPG00000001882	-	98	98.543	ENSDORG00000008667	Polr2a	98	95.609	Dipodomys_ordii
ENSCAPG00000001882	-	99	69.407	FBgn0003277	RpII215	96	75.669	Drosophila_melanogaster
ENSCAPG00000001882	-	91	97.610	ENSETEG00000002540	-	83	97.610	Echinops_telfairi
ENSCAPG00000001882	-	98	84.174	ENSEBUG00000013967	polr2a	97	85.253	Eptatretus_burgeri
ENSCAPG00000001882	-	97	96.390	ENSEASG00005019114	-	98	93.719	Equus_asinus_asinus
ENSCAPG00000001882	-	98	98.480	ENSECAG00000018485	POLR2A	98	95.553	Equus_caballus
ENSCAPG00000001882	-	87	99.523	ENSEEUG00000001154	-	93	99.523	Erinaceus_europaeus
ENSCAPG00000001882	-	88	89.259	ENSELUG00000014284	polr2a	98	82.030	Esox_lucius
ENSCAPG00000001882	-	98	98.543	ENSFDAG00000008287	-	98	95.609	Fukomys_damarensis
ENSCAPG00000001882	-	99	93.679	ENSFHEG00000001768	polr2a	98	91.106	Fundulus_heteroclitus
ENSCAPG00000001882	-	99	90.024	ENSGMOG00000007725	polr2a	98	93.038	Gadus_morhua
ENSCAPG00000001882	-	100	94.366	ENSGAFG00000005389	polr2a	98	92.177	Gambusia_affinis
ENSCAPG00000001882	-	99	90.663	ENSGACG00000019366	polr2a	98	93.094	Gasterosteus_aculeatus
ENSCAPG00000001882	-	98	96.273	ENSGGOG00000014800	-	98	93.622	Gorilla_gorilla
ENSCAPG00000001882	-	97	93.300	ENSHBUG00000018937	polr2a	98	90.773	Haplochromis_burtoni
ENSCAPG00000001882	-	98	98.543	ENSHGLG00000012381	POLR2A	98	95.609	Heterocephalus_glaber_female
ENSCAPG00000001882	-	98	98.543	ENSHGLG00100014843	POLR2A	98	95.609	Heterocephalus_glaber_male
ENSCAPG00000001882	-	100	93.110	ENSHCOG00000011874	polr2a	98	90.606	Hippocampus_comes
ENSCAPG00000001882	-	100	93.363	ENSIPUG00000002613	Polr2a	98	90.828	Ictalurus_punctatus
ENSCAPG00000001882	-	98	98.543	ENSSTOG00000001304	-	98	95.609	Ictidomys_tridecemlineatus
ENSCAPG00000001882	-	98	98.417	ENSJJAG00000013049	Polr2a	98	95.497	Jaculus_jaculus
ENSCAPG00000001882	-	86	85.055	ENSKMAG00000016343	polr2a	84	89.286	Kryptolebias_marmoratus
ENSCAPG00000001882	-	100	93.236	ENSLBEG00000027652	polr2a	99	90.717	Labrus_bergylta
ENSCAPG00000001882	-	100	94.805	ENSLACG00000012071	POLR2A	100	84.102	Latimeria_chalumnae
ENSCAPG00000001882	-	98	91.458	ENSLOCG00000013863	polr2a	95	94.919	Lepisosteus_oculatus
ENSCAPG00000001882	-	100	96.927	ENSLAFG00000008626	-	98	95.553	Loxodonta_africana
ENSCAPG00000001882	-	53	97.996	ENSMFAG00000007042	-	96	97.996	Macaca_fascicularis
ENSCAPG00000001882	-	98	98.480	ENSMMUG00000023620	-	98	95.553	Macaca_mulatta
ENSCAPG00000001882	-	99	98.037	ENSMNEG00000040407	-	98	94.769	Macaca_nemestrina
ENSCAPG00000001882	-	98	93.794	ENSMLEG00000030263	-	96	97.996	Mandrillus_leucophaeus
ENSCAPG00000001882	-	100	93.363	ENSMAMG00000003351	polr2a	98	90.828	Mastacembelus_armatus
ENSCAPG00000001882	-	100	93.300	ENSMZEG00005021429	polr2a	98	90.773	Maylandia_zebra
ENSCAPG00000001882	-	55	99.491	ENSMAUG00000021055	-	99	99.592	Mesocricetus_auratus
ENSCAPG00000001882	-	98	98.480	ENSMICG00000013372	-	98	95.553	Microcebus_murinus
ENSCAPG00000001882	-	100	94.410	ENSMOCG00000018279	Polr2a	98	95.192	Microtus_ochrogaster
ENSCAPG00000001882	-	95	92.857	ENSMMOG00000012515	polr2a	94	90.384	Mola_mola
ENSCAPG00000001882	-	98	98.037	ENSMODG00000007009	-	98	95.164	Monodelphis_domestica
ENSCAPG00000001882	-	98	93.502	ENSMALG00000008716	polr2a	95	91.051	Monopterus_albus
ENSCAPG00000001882	-	98	98.543	MGP_CAROLIEiJ_G0016587	Polr2a	98	95.609	Mus_caroli
ENSCAPG00000001882	-	98	98.543	ENSMUSG00000005198	Polr2a	98	95.609	Mus_musculus
ENSCAPG00000001882	-	98	96.280	MGP_PahariEiJ_G0017718	Polr2a	98	93.632	Mus_pahari
ENSCAPG00000001882	-	98	98.543	MGP_SPRETEiJ_G0017423	Polr2a	98	95.609	Mus_spretus
ENSCAPG00000001882	-	98	98.543	ENSMPUG00000009648	-	98	95.609	Mustela_putorius_furo
ENSCAPG00000001882	-	98	97.913	ENSMLUG00000009088	-	98	95.058	Myotis_lucifugus
ENSCAPG00000001882	-	98	98.543	ENSNGAG00000002543	Polr2a	98	95.609	Nannospalax_galili
ENSCAPG00000001882	-	100	90.025	ENSNBRG00000002005	polr2a	98	88.938	Neolamprologus_brichardi
ENSCAPG00000001882	-	98	97.031	ENSNLEG00000009460	-	98	94.287	Nomascus_leucogenys
ENSCAPG00000001882	-	97	99.324	ENSMEUG00000008611	-	94	99.324	Notamacropus_eugenii
ENSCAPG00000001882	-	86	99.485	ENSOPRG00000015116	-	98	99.485	Ochotona_princeps
ENSCAPG00000001882	-	94	97.961	ENSODEG00000017674	-	98	93.241	Octodon_degus
ENSCAPG00000001882	-	100	93.489	ENSONIG00000009231	polr2a	98	90.939	Oreochromis_niloticus
ENSCAPG00000001882	-	51	98.803	ENSOANG00000003303	-	97	98.803	Ornithorhynchus_anatinus
ENSCAPG00000001882	-	99	96.433	ENSOCUG00000017929	-	98	94.722	Oryctolagus_cuniculus
ENSCAPG00000001882	-	100	93.363	ENSORLG00000006431	polr2a	98	90.828	Oryzias_latipes
ENSCAPG00000001882	-	100	93.363	ENSORLG00020010235	polr2a	98	90.828	Oryzias_latipes_hni
ENSCAPG00000001882	-	100	93.363	ENSORLG00015007075	polr2a	98	90.828	Oryzias_latipes_hsok
ENSCAPG00000001882	-	98	93.710	ENSOMEG00000010713	polr2a	97	94.329	Oryzias_melastigma
ENSCAPG00000001882	-	98	98.353	ENSOGAG00000033608	-	98	95.442	Otolemur_garnettii
ENSCAPG00000001882	-	87	98.543	ENSOARG00000013874	-	97	95.609	Ovis_aries
ENSCAPG00000001882	-	98	95.292	ENSPPAG00000043734	-	98	93.059	Pan_paniscus
ENSCAPG00000001882	-	98	97.031	ENSPTRG00000008691	POLR2A	98	94.287	Pan_troglodytes
ENSCAPG00000001882	-	98	97.657	ENSPANG00000024099	-	98	94.830	Papio_anubis
ENSCAPG00000001882	-	83	92.877	ENSPKIG00000005727	polr2a	83	92.689	Paramormyrops_kingsleyae
ENSCAPG00000001882	-	98	94.840	ENSPSIG00000014006	POLR2A	98	94.840	Pelodiscus_sinensis
ENSCAPG00000001882	-	100	92.787	ENSPMGG00000019734	polr2a	98	94.589	Periophthalmus_magnuspinnatus
ENSCAPG00000001882	-	98	98.543	ENSPEMG00000012521	Polr2a	98	95.609	Peromyscus_maniculatus_bairdii
ENSCAPG00000001882	-	88	98.355	ENSPCIG00000028851	-	81	98.355	Phascolarctos_cinereus
ENSCAPG00000001882	-	88	93.616	ENSPFOG00000007890	polr2a	98	91.051	Poecilia_formosa
ENSCAPG00000001882	-	88	93.616	ENSPLAG00000007399	polr2a	98	91.051	Poecilia_latipinna
ENSCAPG00000001882	-	88	93.616	ENSPMEG00000002071	polr2a	98	91.051	Poecilia_mexicana
ENSCAPG00000001882	-	100	93.552	ENSPREG00000013122	polr2a	98	90.995	Poecilia_reticulata
ENSCAPG00000001882	-	98	98.543	ENSPPYG00000007924	-	98	94.059	Pongo_abelii
ENSCAPG00000001882	-	90	99.726	ENSPCAG00000006951	-	90	99.726	Procavia_capensis
ENSCAPG00000001882	-	98	97.051	ENSPCOG00000025260	-	98	94.322	Propithecus_coquereli
ENSCAPG00000001882	-	98	98.290	ENSPVAG00000005069	-	98	95.386	Pteropus_vampyrus
ENSCAPG00000001882	-	100	93.363	ENSPNYG00000022340	polr2a	98	90.828	Pundamilia_nyererei
ENSCAPG00000001882	-	100	93.805	ENSPNAG00000011237	polr2a	98	91.217	Pygocentrus_nattereri
ENSCAPG00000001882	-	98	98.607	ENSRNOG00000028834	Polr2a	98	95.664	Rattus_norvegicus
ENSCAPG00000001882	-	98	95.630	ENSRBIG00000002471	-	98	91.261	Rhinopithecus_bieti
ENSCAPG00000001882	-	99	98.480	ENSRROG00000029583	-	98	95.452	Rhinopithecus_roxellana
ENSCAPG00000001882	-	87	51.013	YDL140C	RPO21	98	80.180	Saccharomyces_cerevisiae
ENSCAPG00000001882	-	98	98.543	ENSSBOG00000000808	-	98	95.609	Saimiri_boliviensis_boliviensis
ENSCAPG00000001882	-	97	98.037	ENSSHAG00000002858	-	98	95.164	Sarcophilus_harrisii
ENSCAPG00000001882	-	98	93.805	ENSSFOG00015023275	polr2a	99	91.217	Scleropages_formosus
ENSCAPG00000001882	-	100	93.173	ENSSMAG00000009137	polr2a	98	90.460	Scophthalmus_maximus
ENSCAPG00000001882	-	100	93.489	ENSSDUG00000020466	polr2a	98	90.939	Seriola_dumerili
ENSCAPG00000001882	-	100	93.489	ENSSLDG00000020613	polr2a	98	90.939	Seriola_lalandi_dorsalis
ENSCAPG00000001882	-	98	93.480	ENSSARG00000005875	-	98	93.260	Sorex_araneus
ENSCAPG00000001882	-	100	93.429	ENSSPAG00000016741	polr2a	92	94.394	Stegastes_partitus
ENSCAPG00000001882	-	98	97.593	ENSSSCG00000028278	-	98	94.775	Sus_scrofa
ENSCAPG00000001882	-	99	87.674	ENSTRUG00000012320	polr2a	80	88.274	Takifugu_rubripes
ENSCAPG00000001882	-	91	91.972	ENSTNIG00000010136	polr2a	95	92.764	Tetraodon_nigroviridis
ENSCAPG00000001882	-	75	100.000	ENSTBEG00000013294	-	57	100.000	Tupaia_belangeri
ENSCAPG00000001882	-	98	96.580	ENSTTRG00000014273	-	98	93.885	Tursiops_truncatus
ENSCAPG00000001882	-	92	98.231	ENSUAMG00000014866	-	98	93.304	Ursus_americanus
ENSCAPG00000001882	-	90	100.000	ENSUMAG00000015732	-	97	100.000	Ursus_maritimus
ENSCAPG00000001882	-	64	100.000	ENSVPAG00000008842	-	76	100.000	Vicugna_pacos
ENSCAPG00000001882	-	98	98.607	ENSVVUG00000027878	-	98	94.936	Vulpes_vulpes
ENSCAPG00000001882	-	99	98.758	ENSXETG00000012465	polr2a	99	92.766	Xenopus_tropicalis
ENSCAPG00000001882	-	92	92.105	ENSXCOG00000001804	polr2a	98	87.730	Xiphophorus_couchianus
ENSCAPG00000001882	-	100	93.552	ENSXMAG00000015687	polr2a	98	90.995	Xiphophorus_maculatus