EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCAPG00000003631 (Gene tree)
Gene ID: -
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Minus strand
Length: 24980 bases
Position: chrAVPZ01000012.1:16832951-16857930
Accession: 24644
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000001772	EST1_DNA_bind	PF10373.9	1.3e-19	1	1
ENSCAPP00000001763	EST1_DNA_bind	PF10373.9	2.3e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000004118	SMG5-201	2703	-	ENSCAPP00000001763	900 (aa)	-	-
ENSCAPT00000004142	SMG5-202	2550	-	ENSCAPP00000001772	849 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000003631's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000003631's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000003631	SMG5	100	75.286	ENSG00000198952	SMG5	97	74.645	Homo_sapiens
ENSCAPG00000003631	SMG5	100	53.033	ENSAPOG00000019690	smg5	95	52.083	Acanthochromis_polyacanthus
ENSCAPG00000003631	SMG5	100	71.680	ENSAMEG00000014458	SMG5	99	70.314	Ailuropoda_melanoleuca
ENSCAPG00000003631	SMG5	100	50.454	ENSACIG00000001353	smg5	94	50.660	Amphilophus_citrinellus
ENSCAPG00000003631	SMG5	100	49.339	ENSAOCG00000019483	smg5	83	79.167	Amphiprion_ocellaris
ENSCAPG00000003631	SMG5	100	51.699	ENSAPEG00000022949	smg5	83	79.167	Amphiprion_percula
ENSCAPG00000003631	SMG5	100	50.405	ENSATEG00000005348	smg5	95	51.580	Anabas_testudineus
ENSCAPG00000003631	SMG5	100	59.478	ENSAPLG00000010263	SMG5	97	59.218	Anas_platyrhynchos
ENSCAPG00000003631	SMG5	55	65.574	ENSACAG00000009162	-	88	69.555	Anolis_carolinensis
ENSCAPG00000003631	SMG5	100	74.974	ENSANAG00000032899	SMG5	98	74.341	Aotus_nancymaae
ENSCAPG00000003631	SMG5	100	50.000	ENSACLG00000009311	smg5	94	49.949	Astatotilapia_calliptera
ENSCAPG00000003631	SMG5	90	54.647	ENSAMXG00000024616	smg5	97	47.413	Astyanax_mexicanus
ENSCAPG00000003631	SMG5	99	34.939	ENSBTAG00000021747	-	94	33.810	Bos_taurus
ENSCAPG00000003631	SMG5	100	73.520	ENSBTAG00000009435	SMG5	97	73.022	Bos_taurus
ENSCAPG00000003631	SMG5	100	74.974	ENSCJAG00000005684	SMG5	97	74.341	Callithrix_jacchus
ENSCAPG00000003631	SMG5	100	72.604	ENSCAFG00000016839	SMG5	97	71.400	Canis_familiaris
ENSCAPG00000003631	SMG5	100	72.604	ENSCAFG00020006061	SMG5	97	71.400	Canis_lupus_dingo
ENSCAPG00000003631	SMG5	100	73.728	ENSCHIG00000007709	SMG5	97	73.225	Capra_hircus
ENSCAPG00000003631	SMG5	99	34.769	ENSCHIG00000006323	-	95	34.458	Capra_hircus
ENSCAPG00000003631	SMG5	100	73.237	ENSTSYG00000004099	SMG5	97	72.644	Carlito_syrichta
ENSCAPG00000003631	SMG5	100	78.609	ENSCPOG00000015696	SMG5	97	77.586	Cavia_porcellus
ENSCAPG00000003631	SMG5	100	75.182	ENSCCAG00000027409	SMG5	98	74.544	Cebus_capucinus
ENSCAPG00000003631	SMG5	100	75.597	ENSCATG00000030539	SMG5	97	75.153	Cercocebus_atys
ENSCAPG00000003631	SMG5	100	77.155	ENSCLAG00000003983	SMG5	97	76.065	Chinchilla_lanigera
ENSCAPG00000003631	SMG5	100	75.493	ENSCSAG00000002120	SMG5	97	74.949	Chlorocebus_sabaeus
ENSCAPG00000003631	SMG5	55	85.401	ENSCHOG00000008741	-	56	85.766	Choloepus_hoffmanni
ENSCAPG00000003631	SMG5	99	58.746	ENSCPBG00000025848	SMG5	100	59.312	Chrysemys_picta_bellii
ENSCAPG00000003631	SMG5	100	71.547	ENSCANG00000029208	SMG5	97	70.994	Colobus_angolensis_palliatus
ENSCAPG00000003631	SMG5	100	72.690	ENSCGRG00001006336	Smg5	97	71.704	Cricetulus_griseus_chok1gshd
ENSCAPG00000003631	SMG5	100	72.690	ENSCGRG00000005111	Smg5	99	71.704	Cricetulus_griseus_crigri
ENSCAPG00000003631	SMG5	100	50.361	ENSCSEG00000014220	smg5	94	49.278	Cynoglossus_semilaevis
ENSCAPG00000003631	SMG5	100	51.496	ENSCVAG00000000529	smg5	94	51.962	Cyprinodon_variegatus
ENSCAPG00000003631	SMG5	100	70.000	ENSDNOG00000000051	SMG5	97	69.278	Dasypus_novemcinctus
ENSCAPG00000003631	SMG5	100	74.274	ENSDORG00000010382	Smg5	97	73.151	Dipodomys_ordii
ENSCAPG00000003631	SMG5	72	98.058	ENSETEG00000010336	SMG5	75	98.058	Echinops_telfairi
ENSCAPG00000003631	SMG5	90	38.993	ENSEBUG00000003739	smg5	96	38.858	Eptatretus_burgeri
ENSCAPG00000003631	SMG5	100	74.870	ENSEASG00005019122	SMG5	97	74.239	Equus_asinus_asinus
ENSCAPG00000003631	SMG5	100	76.527	ENSECAG00000001389	SMG5	97	75.941	Equus_caballus
ENSCAPG00000003631	SMG5	66	84.334	ENSEEUG00000012690	SMG5	65	83.990	Erinaceus_europaeus
ENSCAPG00000003631	SMG5	100	50.918	ENSELUG00000012585	smg5	95	49.797	Esox_lucius
ENSCAPG00000003631	SMG5	100	72.586	ENSFCAG00000011783	SMG5	97	71.530	Felis_catus
ENSCAPG00000003631	SMG5	55	53.819	ENSFALG00000001166	-	99	50.085	Ficedula_albicollis
ENSCAPG00000003631	SMG5	100	72.917	ENSFDAG00000017388	SMG5	99	73.022	Fukomys_damarensis
ENSCAPG00000003631	SMG5	100	50.104	ENSFHEG00000013939	smg5	100	53.701	Fundulus_heteroclitus
ENSCAPG00000003631	SMG5	100	46.481	ENSGMOG00000007310	smg5	90	52.475	Gadus_morhua
ENSCAPG00000003631	SMG5	100	59.939	ENSGALG00000029918	-	95	59.096	Gallus_gallus
ENSCAPG00000003631	SMG5	92	50.958	ENSGAFG00000021691	smg5	91	62.857	Gambusia_affinis
ENSCAPG00000003631	SMG5	91	55.009	ENSGACG00000013142	smg5	95	47.826	Gasterosteus_aculeatus
ENSCAPG00000003631	SMG5	100	60.160	ENSGAGG00000016131	SMG5	95	59.579	Gopherus_agassizii
ENSCAPG00000003631	SMG5	100	75.078	ENSGGOG00000010932	SMG5	97	74.442	Gorilla_gorilla
ENSCAPG00000003631	SMG5	100	49.899	ENSHBUG00000008654	smg5	94	49.147	Haplochromis_burtoni
ENSCAPG00000003631	SMG5	100	73.854	ENSHGLG00000019152	SMG5	97	72.819	Heterocephalus_glaber_female
ENSCAPG00000003631	SMG5	90	73.984	ENSHGLG00100015948	SMG5	97	72.830	Heterocephalus_glaber_male
ENSCAPG00000003631	SMG5	84	49.451	ENSHCOG00000010229	smg5	88	50.441	Hippocampus_comes
ENSCAPG00000003631	SMG5	100	47.701	ENSIPUG00000006624	Smg5	97	47.009	Ictalurus_punctatus
ENSCAPG00000003631	SMG5	100	74.974	ENSSTOG00000001780	SMG5	97	74.239	Ictidomys_tridecemlineatus
ENSCAPG00000003631	SMG5	100	73.493	ENSJJAG00000022763	Smg5	97	72.396	Jaculus_jaculus
ENSCAPG00000003631	SMG5	91	54.579	ENSKMAG00000014586	smg5	97	45.719	Kryptolebias_marmoratus
ENSCAPG00000003631	SMG5	100	51.682	ENSLBEG00000002145	smg5	94	50.612	Labrus_bergylta
ENSCAPG00000003631	SMG5	100	48.992	ENSLACG00000010521	SMG5	95	49.194	Latimeria_chalumnae
ENSCAPG00000003631	SMG5	100	73.229	ENSLAFG00000006241	SMG5	98	72.060	Loxodonta_africana
ENSCAPG00000003631	SMG5	100	75.493	ENSMFAG00000045357	SMG5	97	74.949	Macaca_fascicularis
ENSCAPG00000003631	SMG5	100	75.597	ENSMMUG00000000090	SMG5	97	75.051	Macaca_mulatta
ENSCAPG00000003631	SMG5	100	75.389	ENSMNEG00000044425	SMG5	97	74.848	Macaca_nemestrina
ENSCAPG00000003631	SMG5	87	82.447	ENSMLEG00000041192	SMG5	81	83.437	Mandrillus_leucophaeus
ENSCAPG00000003631	SMG5	100	46.623	ENSMAMG00000010683	smg5	100	50.000	Mastacembelus_armatus
ENSCAPG00000003631	SMG5	100	50.355	ENSMZEG00005015815	smg5	94	49.796	Maylandia_zebra
ENSCAPG00000003631	SMG5	73	54.491	ENSMZEG00005016543	smg5	100	54.683	Maylandia_zebra
ENSCAPG00000003631	SMG5	100	71.963	ENSMAUG00000010381	Smg5	97	70.892	Mesocricetus_auratus
ENSCAPG00000003631	SMG5	100	74.896	ENSMICG00000002257	SMG5	97	74.037	Microcebus_murinus
ENSCAPG00000003631	SMG5	100	71.954	ENSMOCG00000016590	Smg5	97	70.974	Microtus_ochrogaster
ENSCAPG00000003631	SMG5	100	45.549	ENSMMOG00000017199	smg5	97	44.331	Mola_mola
ENSCAPG00000003631	SMG5	69	35.115	ENSMODG00000010675	-	77	35.121	Monodelphis_domestica
ENSCAPG00000003631	SMG5	86	68.345	ENSMODG00000016901	SMG5	95	65.694	Monodelphis_domestica
ENSCAPG00000003631	SMG5	76	32.426	ENSMODG00000004532	-	67	33.867	Monodelphis_domestica
ENSCAPG00000003631	SMG5	73	36.316	ENSMODG00000004735	-	83	35.829	Monodelphis_domestica
ENSCAPG00000003631	SMG5	100	46.009	ENSMALG00000010375	smg5	95	48.123	Monopterus_albus
ENSCAPG00000003631	SMG5	100	72.482	MGP_CAROLIEiJ_G0025163	Smg5	97	71.400	Mus_caroli
ENSCAPG00000003631	SMG5	100	72.586	ENSMUSG00000001415	Smg5	97	71.501	Mus_musculus
ENSCAPG00000003631	SMG5	100	72.199	MGP_PahariEiJ_G0026606	Smg5	97	71.226	Mus_pahari
ENSCAPG00000003631	SMG5	100	72.378	MGP_SPRETEiJ_G0026104	Smg5	97	71.298	Mus_spretus
ENSCAPG00000003631	SMG5	99	72.147	ENSMPUG00000004546	SMG5	100	72.059	Mustela_putorius_furo
ENSCAPG00000003631	SMG5	100	73.859	ENSMLUG00000008518	SMG5	97	72.525	Myotis_lucifugus
ENSCAPG00000003631	SMG5	100	73.333	ENSNGAG00000020706	Smg5	97	72.211	Nannospalax_galili
ENSCAPG00000003631	SMG5	100	33.471	ENSNGAG00000012101	-	95	33.609	Nannospalax_galili
ENSCAPG00000003631	SMG5	96	47.979	ENSNBRG00000004332	smg5	92	47.599	Neolamprologus_brichardi
ENSCAPG00000003631	SMG5	100	74.974	ENSNLEG00000012439	SMG5	97	74.442	Nomascus_leucogenys
ENSCAPG00000003631	SMG5	100	67.394	ENSMEUG00000012834	SMG5	97	65.112	Notamacropus_eugenii
ENSCAPG00000003631	SMG5	100	72.378	ENSOPRG00000009152	SMG5	97	71.777	Ochotona_princeps
ENSCAPG00000003631	SMG5	100	75.312	ENSODEG00000012237	SMG5	97	74.239	Octodon_degus
ENSCAPG00000003631	SMG5	90	32.097	ENSOCUG00000023338	-	93	31.771	Oryctolagus_cuniculus
ENSCAPG00000003631	SMG5	100	73.624	ENSOCUG00000012886	SMG5	99	73.022	Oryctolagus_cuniculus
ENSCAPG00000003631	SMG5	89	54.128	ENSORLG00000016239	smg5	97	45.733	Oryzias_latipes
ENSCAPG00000003631	SMG5	100	49.020	ENSORLG00020013127	smg5	94	50.771	Oryzias_latipes_hni
ENSCAPG00000003631	SMG5	100	50.412	ENSORLG00015019014	smg5	94	50.922	Oryzias_latipes_hsok
ENSCAPG00000003631	SMG5	80	43.587	ENSOMEG00000021330	smg5	89	44.085	Oryzias_melastigma
ENSCAPG00000003631	SMG5	93	85.626	ENSOGAG00000004966	SMG5	97	72.921	Otolemur_garnettii
ENSCAPG00000003631	SMG5	100	73.832	ENSOARG00000005778	SMG5	97	73.327	Ovis_aries
ENSCAPG00000003631	SMG5	99	34.698	ENSOARG00000011963	-	95	33.740	Ovis_aries
ENSCAPG00000003631	SMG5	100	75.078	ENSPPAG00000011996	SMG5	97	74.442	Pan_paniscus
ENSCAPG00000003631	SMG5	100	72.917	ENSPPRG00000011901	SMG5	99	71.805	Panthera_pardus
ENSCAPG00000003631	SMG5	99	65.787	ENSPTIG00000007892	SMG5	96	65.291	Panthera_tigris_altaica
ENSCAPG00000003631	SMG5	100	75.182	ENSPTRG00000023925	SMG5	97	74.544	Pan_troglodytes
ENSCAPG00000003631	SMG5	100	75.182	ENSPTRG00000049282	-	97	74.544	Pan_troglodytes
ENSCAPG00000003631	SMG5	100	75.597	ENSPANG00000011201	SMG5	97	75.051	Papio_anubis
ENSCAPG00000003631	SMG5	100	50.413	ENSPKIG00000009402	smg5	95	50.462	Paramormyrops_kingsleyae
ENSCAPG00000003631	SMG5	100	60.634	ENSPSIG00000015198	SMG5	97	60.123	Pelodiscus_sinensis
ENSCAPG00000003631	SMG5	100	48.497	ENSPMGG00000010465	smg5	95	48.202	Periophthalmus_magnuspinnatus
ENSCAPG00000003631	SMG5	52	32.169	ENSPEMG00000010022	-	90	31.868	Peromyscus_maniculatus_bairdii
ENSCAPG00000003631	SMG5	100	72.378	ENSPEMG00000001819	Smg5	97	71.501	Peromyscus_maniculatus_bairdii
ENSCAPG00000003631	SMG5	100	37.624	ENSPMAG00000000410	smg5	99	37.729	Petromyzon_marinus
ENSCAPG00000003631	SMG5	100	68.568	ENSPCIG00000018938	SMG5	97	66.261	Phascolarctos_cinereus
ENSCAPG00000003631	SMG5	92	55.762	ENSPFOG00000010191	smg5	95	47.925	Poecilia_formosa
ENSCAPG00000003631	SMG5	92	55.204	ENSPLAG00000009332	smg5	95	47.642	Poecilia_latipinna
ENSCAPG00000003631	SMG5	100	51.266	ENSPMEG00000014105	smg5	94	49.849	Poecilia_mexicana
ENSCAPG00000003631	SMG5	92	55.204	ENSPREG00000017713	smg5	97	46.857	Poecilia_reticulata
ENSCAPG00000003631	SMG5	100	75.286	ENSPPYG00000000723	SMG5	97	74.645	Pongo_abelii
ENSCAPG00000003631	SMG5	72	97.452	ENSPCAG00000008412	SMG5	70	97.452	Procavia_capensis
ENSCAPG00000003631	SMG5	100	76.514	ENSPCOG00000004741	SMG5	97	75.934	Propithecus_coquereli
ENSCAPG00000003631	SMG5	92	100.000	ENSPVAG00000016748	SMG5	83	100.000	Pteropus_vampyrus
ENSCAPG00000003631	SMG5	92	54.645	ENSPNYG00000013397	smg5	91	53.279	Pundamilia_nyererei
ENSCAPG00000003631	SMG5	100	48.184	ENSPNAG00000028363	smg5	97	47.477	Pygocentrus_nattereri
ENSCAPG00000003631	SMG5	100	72.378	ENSRNOG00000019590	Smg5	97	71.501	Rattus_norvegicus
ENSCAPG00000003631	SMG5	100	75.493	ENSRBIG00000027428	SMG5	97	74.949	Rhinopithecus_bieti
ENSCAPG00000003631	SMG5	100	75.493	ENSRROG00000030035	SMG5	97	74.848	Rhinopithecus_roxellana
ENSCAPG00000003631	SMG5	100	75.078	ENSSBOG00000033339	SMG5	97	74.442	Saimiri_boliviensis_boliviensis
ENSCAPG00000003631	SMG5	61	38.235	ENSSHAG00000000935	-	60	39.024	Sarcophilus_harrisii
ENSCAPG00000003631	SMG5	55	51.064	ENSSHAG00000000561	-	57	55.814	Sarcophilus_harrisii
ENSCAPG00000003631	SMG5	100	68.323	ENSSHAG00000014163	SMG5	99	67.137	Sarcophilus_harrisii
ENSCAPG00000003631	SMG5	100	50.825	ENSSFOG00015024175	smg5	95	50.968	Scleropages_formosus
ENSCAPG00000003631	SMG5	91	57.778	ENSSMAG00000013059	smg5	88	56.889	Scophthalmus_maximus
ENSCAPG00000003631	SMG5	100	46.568	ENSSDUG00000007122	smg5	81	77.083	Seriola_dumerili
ENSCAPG00000003631	SMG5	76	81.319	ENSSLDG00000011418	smg5	88	52.589	Seriola_lalandi_dorsalis
ENSCAPG00000003631	SMG5	76	95.349	ENSSARG00000012484	SMG5	79	95.349	Sorex_araneus
ENSCAPG00000003631	SMG5	99	58.494	ENSSPUG00000002260	SMG5	100	57.610	Sphenodon_punctatus
ENSCAPG00000003631	SMG5	82	71.698	ENSSPAG00000014266	smg5	95	50.067	Stegastes_partitus
ENSCAPG00000003631	SMG5	100	76.635	ENSSSCG00000006490	-	100	75.105	Sus_scrofa
ENSCAPG00000003631	SMG5	100	62.404	ENSSSCG00000039308	-	95	62.819	Sus_scrofa
ENSCAPG00000003631	SMG5	100	60.103	ENSTGUG00000003748	-	95	60.288	Taeniopygia_guttata
ENSCAPG00000003631	SMG5	100	50.256	ENSTRUG00000012580	smg5	95	49.643	Takifugu_rubripes
ENSCAPG00000003631	SMG5	100	50.256	ENSTNIG00000010303	smg5	95	49.796	Tetraodon_nigroviridis
ENSCAPG00000003631	SMG5	100	72.586	ENSTTRG00000001401	SMG5	94	73.021	Tursiops_truncatus
ENSCAPG00000003631	SMG5	100	72.396	ENSUAMG00000013721	SMG5	97	71.095	Ursus_americanus
ENSCAPG00000003631	SMG5	100	67.983	ENSUMAG00000018041	SMG5	98	66.091	Ursus_maritimus
ENSCAPG00000003631	SMG5	87	73.951	ENSVPAG00000009446	SMG5	81	74.473	Vicugna_pacos
ENSCAPG00000003631	SMG5	100	72.500	ENSVVUG00000005887	SMG5	97	71.400	Vulpes_vulpes
ENSCAPG00000003631	SMG5	84	54.750	ENSXETG00000033791	SMG5	99	54.798	Xenopus_tropicalis
ENSCAPG00000003631	SMG5	65	60.989	ENSXCOG00000004379	smg5	92	60.989	Xiphophorus_couchianus
ENSCAPG00000003631	SMG5	100	49.642	ENSXMAG00000013499	smg5	94	50.000	Xiphophorus_maculatus