EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAPG00000004247 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Plus strand
Length: 16260 bases
Position: chrAVPZ01000445.1:46520923-46537182
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000001977	DEAD	PF00270.29	3.3e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000004713	-	1350	-	ENSCAPP00000001977	449 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000004247's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000004247's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAPG00000004247	-	83	36.761	ENSCAPG00000011375	DDX41	73	36.788
ENSCAPG00000004247	-	73	35.756	ENSCAPG00000004039	DDX18	56	35.756
ENSCAPG00000004247	-	51	38.144	ENSCAPG00000017836	-	65	38.144
ENSCAPG00000004247	-	88	34.307	ENSCAPG00000013621	DDX42	59	33.820
ENSCAPG00000004247	-	55	40.426	ENSCAPG00000002814	DDX47	84	40.426
ENSCAPG00000004247	-	72	31.085	ENSCAPG00000005124	DDX55	58	31.085
ENSCAPG00000004247	-	82	34.375	ENSCAPG00000014373	-	60	34.375
ENSCAPG00000004247	-	70	30.966	ENSCAPG00000007592	DDX24	53	30.966
ENSCAPG00000004247	-	61	34.058	ENSCAPG00000012540	EIF4A1	95	34.058
ENSCAPG00000004247	-	80	33.875	ENSCAPG00000012222	DDX49	77	33.875
ENSCAPG00000004247	-	75	42.857	ENSCAPG00000007398	DDX5	89	42.857
ENSCAPG00000004247	-	89	35.363	ENSCAPG00000010945	-	65	35.363

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000004247	-	100	77.888	ENSAMEG00000007851	-	77	77.888	Ailuropoda_melanoleuca
ENSCAPG00000004247	-	100	72.908	ENSBTAG00000021814	-	77	72.908	Bos_taurus
ENSCAPG00000004247	-	100	76.693	ENSCAFG00020010029	-	78	76.693	Canis_lupus_dingo
ENSCAPG00000004247	-	94	74.316	ENSCAFG00020002717	-	79	74.316	Canis_lupus_dingo
ENSCAPG00000004247	-	100	73.307	ENSCHIG00000017351	-	77	73.307	Capra_hircus
ENSCAPG00000004247	-	100	89.442	ENSCPOG00000003991	-	78	89.442	Cavia_porcellus
ENSCAPG00000004247	-	100	78.884	ENSCLAG00000010261	-	76	78.884	Chinchilla_lanigera
ENSCAPG00000004247	-	75	78.994	ENSCHOG00000003450	-	60	78.994	Choloepus_hoffmanni
ENSCAPG00000004247	-	100	81.673	ENSCGRG00001001145	Ddx43	78	81.673	Cricetulus_griseus_chok1gshd
ENSCAPG00000004247	-	100	81.474	ENSCGRG00000010217	Ddx43	89	81.474	Cricetulus_griseus_crigri
ENSCAPG00000004247	-	99	78.842	ENSDNOG00000017589	-	77	78.842	Dasypus_novemcinctus
ENSCAPG00000004247	-	100	80.478	ENSDORG00000030010	Ddx43	78	80.478	Dipodomys_ordii
ENSCAPG00000004247	-	76	88.791	ENSETEG00000001887	-	53	88.791	Echinops_telfairi
ENSCAPG00000004247	-	100	78.926	ENSEASG00005004346	-	71	78.926	Equus_asinus_asinus
ENSCAPG00000004247	-	100	79.125	ENSECAG00000017971	DDX43	78	79.125	Equus_caballus
ENSCAPG00000004247	-	100	75.697	ENSFCAG00000031631	-	77	75.697	Felis_catus
ENSCAPG00000004247	-	99	84.830	ENSHGLG00000001118	-	89	84.830	Heterocephalus_glaber_female
ENSCAPG00000004247	-	99	84.830	ENSHGLG00100011895	-	79	84.830	Heterocephalus_glaber_male
ENSCAPG00000004247	-	100	69.323	ENSSTOG00000032538	-	88	69.323	Ictidomys_tridecemlineatus
ENSCAPG00000004247	-	100	80.279	ENSJJAG00000014184	Ddx43	78	80.279	Jaculus_jaculus
ENSCAPG00000004247	-	100	78.884	ENSLAFG00000012755	-	83	78.884	Loxodonta_africana
ENSCAPG00000004247	-	100	81.673	ENSMAUG00000001441	Ddx43	78	81.673	Mesocricetus_auratus
ENSCAPG00000004247	-	99	81.038	ENSMOCG00000012956	Ddx43	77	81.038	Microtus_ochrogaster
ENSCAPG00000004247	-	100	81.673	MGP_CAROLIEiJ_G0032467	Ddx43	78	81.673	Mus_caroli
ENSCAPG00000004247	-	100	81.873	ENSMUSG00000070291	Ddx43	78	81.873	Mus_musculus
ENSCAPG00000004247	-	100	81.673	MGP_PahariEiJ_G0015333	Ddx43	86	81.673	Mus_pahari
ENSCAPG00000004247	-	100	81.873	MGP_SPRETEiJ_G0033607	Ddx43	78	81.873	Mus_spretus
ENSCAPG00000004247	-	100	78.685	ENSMPUG00000004342	-	77	78.685	Mustela_putorius_furo
ENSCAPG00000004247	-	100	78.571	ENSMLUG00000017604	-	77	78.571	Myotis_lucifugus
ENSCAPG00000004247	-	100	81.275	ENSNGAG00000015102	Ddx43	78	81.275	Nannospalax_galili
ENSCAPG00000004247	-	72	89.286	ENSOPRG00000013523	-	66	89.286	Ochotona_princeps
ENSCAPG00000004247	-	99	83.034	ENSODEG00000016207	-	92	83.034	Octodon_degus
ENSCAPG00000004247	-	100	76.096	ENSOCUG00000006338	-	78	72.244	Oryctolagus_cuniculus
ENSCAPG00000004247	-	88	71.106	ENSOCUG00000025811	-	75	71.106	Oryctolagus_cuniculus
ENSCAPG00000004247	-	100	73.307	ENSOARG00000010873	-	77	73.307	Ovis_aries
ENSCAPG00000004247	-	100	75.896	ENSPTIG00000017842	-	77	75.896	Panthera_tigris_altaica
ENSCAPG00000004247	-	100	82.271	ENSPEMG00000023986	Ddx43	89	82.271	Peromyscus_maniculatus_bairdii
ENSCAPG00000004247	-	99	77.645	ENSPCAG00000005962	-	78	77.645	Procavia_capensis
ENSCAPG00000004247	-	100	79.920	ENSPVAG00000012718	-	89	79.920	Pteropus_vampyrus
ENSCAPG00000004247	-	100	81.673	ENSRNOG00000050868	Ddx43	78	81.673	Rattus_norvegicus
ENSCAPG00000004247	-	100	77.183	ENSSARG00000013493	-	92	77.183	Sorex_araneus
ENSCAPG00000004247	-	99	75.480	ENSSSCG00000004287	-	77	75.480	Sus_scrofa
ENSCAPG00000004247	-	100	65.339	ENSTTRG00000001488	-	88	65.339	Tursiops_truncatus
ENSCAPG00000004247	-	76	75.064	ENSUAMG00000012894	-	61	75.064	Ursus_americanus
ENSCAPG00000004247	-	100	77.291	ENSUMAG00000012291	-	77	77.291	Ursus_maritimus
ENSCAPG00000004247	-	92	66.379	ENSVPAG00000004969	-	76	66.379	Vicugna_pacos
ENSCAPG00000004247	-	100	76.892	ENSVVUG00000013908	-	78	76.892	Vulpes_vulpes