EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCAPG00000004604 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Minus strand
Length: 52838 bases
Position: chrAVPZ01000889.1:39101966-39154803
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000002117	XRN_N	PF03159.18	3.6e-86	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000005123	-	2502	-	ENSCAPP00000002117	833 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000004604's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000004604's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000004604	-	99	76.783	ENSG00000114127	XRN1	73	100.000	Homo_sapiens
ENSCAPG00000004604	-	99	62.791	ENSAPOG00000000622	xrn1	93	62.092	Acanthochromis_polyacanthus
ENSCAPG00000004604	-	99	76.285	ENSAMEG00000012538	XRN1	54	76.285	Ailuropoda_melanoleuca
ENSCAPG00000004604	-	99	62.541	ENSACIG00000001057	xrn1	58	62.541	Amphilophus_citrinellus
ENSCAPG00000004604	-	99	62.625	ENSAOCG00000014097	xrn1	65	86.667	Amphiprion_ocellaris
ENSCAPG00000004604	-	94	85.581	ENSAPEG00000006620	xrn1	54	85.581	Amphiprion_percula
ENSCAPG00000004604	-	99	66.609	ENSATEG00000009752	xrn1	60	66.496	Anabas_testudineus
ENSCAPG00000004604	-	99	76.617	ENSANAG00000029013	XRN1	82	76.617	Aotus_nancymaae
ENSCAPG00000004604	-	94	84.186	ENSACLG00000004806	xrn1	50	84.186	Astatotilapia_calliptera
ENSCAPG00000004604	-	99	58.319	ENSAMXG00000019370	xrn1	72	93.590	Astyanax_mexicanus
ENSCAPG00000004604	-	99	75.456	ENSBTAG00000011524	XRN1	55	75.456	Bos_taurus
ENSCAPG00000004604	-	99	76.617	ENSCJAG00000001872	XRN1	57	76.617	Callithrix_jacchus
ENSCAPG00000004604	-	99	77.280	ENSCAFG00000007783	XRN1	54	77.280	Canis_familiaris
ENSCAPG00000004604	-	99	77.280	ENSCAFG00020009120	XRN1	97	74.973	Canis_lupus_dingo
ENSCAPG00000004604	-	99	76.119	ENSCHIG00000019192	XRN1	55	76.119	Capra_hircus
ENSCAPG00000004604	-	99	76.285	ENSTSYG00000002705	XRN1	55	76.285	Carlito_syrichta
ENSCAPG00000004604	-	99	76.949	ENSCCAG00000034800	XRN1	97	73.968	Cebus_capucinus
ENSCAPG00000004604	-	99	76.783	ENSCATG00000041794	XRN1	55	76.783	Cercocebus_atys
ENSCAPG00000004604	-	99	78.109	ENSCLAG00000001451	XRN1	97	74.815	Chinchilla_lanigera
ENSCAPG00000004604	-	99	76.949	ENSCSAG00000011265	XRN1	55	76.949	Chlorocebus_sabaeus
ENSCAPG00000004604	-	85	47.027	ENSCSAVG00000008584	-	60	48.036	Ciona_savignyi
ENSCAPG00000004604	-	99	76.949	ENSCANG00000037495	XRN1	97	74.074	Colobus_angolensis_palliatus
ENSCAPG00000004604	-	99	76.783	ENSCGRG00001019411	Xrn1	97	73.333	Cricetulus_griseus_chok1gshd
ENSCAPG00000004604	-	99	76.783	ENSCGRG00000012464	Xrn1	97	73.333	Cricetulus_griseus_crigri
ENSCAPG00000004604	-	99	61.905	ENSCSEG00000021285	xrn1	71	93.671	Cynoglossus_semilaevis
ENSCAPG00000004604	-	99	61.313	ENSCVAG00000013089	xrn1	83	60.099	Cyprinodon_variegatus
ENSCAPG00000004604	-	98	61.944	ENSDARG00000091652	xrn1	98	58.650	Danio_rerio
ENSCAPG00000004604	-	99	77.114	ENSDORG00000013833	Xrn1	55	77.114	Dipodomys_ordii
ENSCAPG00000004604	-	99	43.189	FBgn0020261	pcm	56	43.101	Drosophila_melanogaster
ENSCAPG00000004604	-	94	97.653	ENSEASG00005002687	XRN1	97	73.122	Equus_asinus_asinus
ENSCAPG00000004604	-	99	61.386	ENSELUG00000000169	xrn1	54	61.386	Esox_lucius
ENSCAPG00000004604	-	99	80.885	ENSFCAG00000027589	XRN1	93	70.000	Felis_catus
ENSCAPG00000004604	-	99	78.109	ENSFDAG00000020494	XRN1	97	75.556	Fukomys_damarensis
ENSCAPG00000004604	-	50	61.283	ENSFHEG00000017356	-	98	60.619	Fundulus_heteroclitus
ENSCAPG00000004604	-	99	59.539	ENSGMOG00000006396	xrn1	55	58.456	Gadus_morhua
ENSCAPG00000004604	-	99	76.783	ENSGGOG00000008047	XRN1	55	76.783	Gorilla_gorilla
ENSCAPG00000004604	-	99	63.712	ENSHBUG00000005908	xrn1	98	58.455	Haplochromis_burtoni
ENSCAPG00000004604	-	99	78.939	ENSHGLG00000014476	XRN1	97	75.530	Heterocephalus_glaber_female
ENSCAPG00000004604	-	99	78.939	ENSHGLG00100015130	XRN1	97	75.530	Heterocephalus_glaber_male
ENSCAPG00000004604	-	99	61.412	ENSHCOG00000014062	xrn1	60	61.248	Hippocampus_comes
ENSCAPG00000004604	-	99	77.114	ENSSTOG00000013552	XRN1	97	73.489	Ictidomys_tridecemlineatus
ENSCAPG00000004604	-	99	75.249	ENSJJAG00000010863	Xrn1	100	72.698	Jaculus_jaculus
ENSCAPG00000004604	-	94	85.581	ENSKMAG00000021356	xrn1	94	56.962	Kryptolebias_marmoratus
ENSCAPG00000004604	-	99	62.355	ENSLBEG00000018656	xrn1	74	94.872	Labrus_bergylta
ENSCAPG00000004604	-	99	76.451	ENSLAFG00000015426	XRN1	78	97.653	Loxodonta_africana
ENSCAPG00000004604	-	99	76.617	ENSMFAG00000032599	XRN1	55	76.617	Macaca_fascicularis
ENSCAPG00000004604	-	99	76.783	ENSMMUG00000014038	XRN1	55	76.783	Macaca_mulatta
ENSCAPG00000004604	-	99	76.285	ENSMNEG00000034217	XRN1	55	76.285	Macaca_nemestrina
ENSCAPG00000004604	-	94	85.581	ENSMAMG00000013219	xrn1	74	80.851	Mastacembelus_armatus
ENSCAPG00000004604	-	94	84.186	ENSMZEG00005015099	xrn1	50	84.186	Maylandia_zebra
ENSCAPG00000004604	-	99	77.114	ENSMICG00000048948	XRN1	73	100.000	Microcebus_murinus
ENSCAPG00000004604	-	100	71.958	ENSMOCG00000008665	Xrn1	97	71.958	Microtus_ochrogaster
ENSCAPG00000004604	-	51	80.576	ENSMMOG00000020896	-	77	80.576	Mola_mola
ENSCAPG00000004604	-	99	72.564	MGP_CAROLIEiJ_G0032535	Xrn1	100	97.500	Mus_caroli
ENSCAPG00000004604	-	99	75.788	ENSMUSG00000032410	Xrn1	100	97.500	Mus_musculus
ENSCAPG00000004604	-	99	75.622	MGP_PahariEiJ_G0015404	Xrn1	100	97.500	Mus_pahari
ENSCAPG00000004604	-	99	75.622	MGP_SPRETEiJ_G0033678	Xrn1	100	97.500	Mus_spretus
ENSCAPG00000004604	-	97	75.954	ENSMLUG00000016885	XRN1	55	75.954	Myotis_lucifugus
ENSCAPG00000004604	-	99	76.696	ENSNGAG00000023964	Xrn1	97	76.696	Nannospalax_galili
ENSCAPG00000004604	-	99	77.114	ENSNLEG00000004726	XRN1	55	77.114	Nomascus_leucogenys
ENSCAPG00000004604	-	94	85.581	ENSONIG00000016673	xrn1	55	85.581	Oreochromis_niloticus
ENSCAPG00000004604	-	99	77.280	ENSOCUG00000001861	XRN1	54	77.280	Oryctolagus_cuniculus
ENSCAPG00000004604	-	99	63.322	ENSORLG00000013005	xrn1	57	63.158	Oryzias_latipes
ENSCAPG00000004604	-	99	63.366	ENSORLG00020005559	xrn1	57	62.829	Oryzias_latipes_hni
ENSCAPG00000004604	-	99	62.871	ENSORLG00015022523	xrn1	59	62.171	Oryzias_latipes_hsok
ENSCAPG00000004604	-	99	62.810	ENSOMEG00000015397	xrn1	60	62.645	Oryzias_melastigma
ENSCAPG00000004604	-	99	71.476	ENSOGAG00000000170	XRN1	55	71.476	Otolemur_garnettii
ENSCAPG00000004604	-	99	76.119	ENSOARG00000006343	XRN1	55	76.119	Ovis_aries
ENSCAPG00000004604	-	99	76.783	ENSPPAG00000010180	XRN1	56	76.783	Pan_paniscus
ENSCAPG00000004604	-	99	76.656	ENSPPRG00000007125	XRN1	56	76.656	Panthera_pardus
ENSCAPG00000004604	-	99	76.656	ENSPTIG00000021081	XRN1	56	76.490	Panthera_tigris_altaica
ENSCAPG00000004604	-	99	76.783	ENSPTRG00000015482	XRN1	56	76.783	Pan_troglodytes
ENSCAPG00000004604	-	99	76.783	ENSPANG00000010638	XRN1	55	76.783	Papio_anubis
ENSCAPG00000004604	-	99	58.140	ENSPMGG00000002648	xrn1	96	58.767	Periophthalmus_magnuspinnatus
ENSCAPG00000004604	-	100	72.275	ENSPEMG00000020610	Xrn1	97	72.275	Peromyscus_maniculatus_bairdii
ENSCAPG00000004604	-	74	67.845	ENSPMAG00000002975	xrn1	54	67.845	Petromyzon_marinus
ENSCAPG00000004604	-	94	93.427	ENSPCIG00000028735	XRN1	97	68.326	Phascolarctos_cinereus
ENSCAPG00000004604	-	94	86.047	ENSPFOG00000013932	xrn1	55	86.047	Poecilia_formosa
ENSCAPG00000004604	-	94	86.047	ENSPLAG00000021653	xrn1	54	86.047	Poecilia_latipinna
ENSCAPG00000004604	-	94	86.047	ENSPMEG00000003076	xrn1	53	86.047	Poecilia_mexicana
ENSCAPG00000004604	-	94	85.116	ENSPREG00000021147	xrn1	51	85.116	Poecilia_reticulata
ENSCAPG00000004604	-	99	76.617	ENSPPYG00000014172	XRN1	55	76.617	Pongo_abelii
ENSCAPG00000004604	-	90	96.244	ENSPCAG00000005638	XRN1	51	96.244	Procavia_capensis
ENSCAPG00000004604	-	99	76.949	ENSPCOG00000013089	XRN1	97	74.180	Propithecus_coquereli
ENSCAPG00000004604	-	99	61.589	ENSPNYG00000010570	xrn1	57	61.551	Pundamilia_nyererei
ENSCAPG00000004604	-	95	78.440	ENSPNAG00000023531	xrn1	50	78.440	Pygocentrus_nattereri
ENSCAPG00000004604	-	99	75.788	ENSRNOG00000042951	Xrn1	55	75.788	Rattus_norvegicus
ENSCAPG00000004604	-	99	76.783	ENSRBIG00000041227	XRN1	56	76.783	Rhinopithecus_bieti
ENSCAPG00000004604	-	99	61.653	ENSSFOG00015024211	xrn1	57	61.983	Scleropages_formosus
ENSCAPG00000004604	-	99	63.036	ENSSMAG00000016534	xrn1	59	62.871	Scophthalmus_maximus
ENSCAPG00000004604	-	94	86.047	ENSSDUG00000010306	xrn1	54	86.047	Seriola_dumerili
ENSCAPG00000004604	-	94	86.047	ENSSLDG00000021543	xrn1	53	86.047	Seriola_lalandi_dorsalis
ENSCAPG00000004604	-	91	73.267	ENSSARG00000007741	-	63	73.267	Sorex_araneus
ENSCAPG00000004604	-	51	59.026	ENSSPAG00000009856	-	96	59.229	Stegastes_partitus
ENSCAPG00000004604	-	99	58.796	ENSTRUG00000004895	xrn1	96	58.635	Takifugu_rubripes
ENSCAPG00000004604	-	98	60.309	ENSTNIG00000017615	xrn1	55	60.137	Tetraodon_nigroviridis
ENSCAPG00000004604	-	99	66.445	ENSTBEG00000003256	XRN1	57	66.445	Tupaia_belangeri
ENSCAPG00000004604	-	99	71.144	ENSUAMG00000001608	XRN1	97	69.989	Ursus_americanus
ENSCAPG00000004604	-	99	76.617	ENSUMAG00000013625	XRN1	55	76.617	Ursus_maritimus
ENSCAPG00000004604	-	99	76.783	ENSVPAG00000004690	XRN1	55	76.783	Vicugna_pacos
ENSCAPG00000004604	-	99	77.612	ENSVVUG00000024461	XRN1	97	74.153	Vulpes_vulpes
ENSCAPG00000004604	-	94	91.667	ENSXETG00000000619	xrn1	63	92.308	Xenopus_tropicalis
ENSCAPG00000004604	-	94	86.047	ENSXCOG00000007917	xrn1	50	86.047	Xiphophorus_couchianus
ENSCAPG00000004604	-	94	86.047	ENSXMAG00000018320	xrn1	52	86.047	Xiphophorus_maculatus