EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCAPG00000005758 (Gene tree)
Gene ID: -
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Plus strand
Length: 9577 bases
Position: chrAVPZ01000700.1:8283792-8293368
Accession: 9962
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000002851	UPF1_Zn_bind	PF09416.10	4e-75	1	1
ENSCAPP00000002851	ResIII	PF04851.15	1.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000006405	UPF1-201	3309	-	ENSCAPP00000002851	1102 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000005758's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000005758's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000005758	UPF1	95	98.764	ENSG00000005007	UPF1	93	98.764	Homo_sapiens
ENSCAPG00000005758	UPF1	95	93.542	ENSAPOG00000010916	-	96	92.958	Acanthochromis_polyacanthus
ENSCAPG00000005758	UPF1	95	92.235	ENSAPOG00000023773	upf1	96	91.854	Acanthochromis_polyacanthus
ENSCAPG00000005758	UPF1	95	98.573	ENSAMEG00000011474	UPF1	93	98.573	Ailuropoda_melanoleuca
ENSCAPG00000005758	UPF1	94	93.726	ENSACIG00000010985	-	100	93.822	Amphilophus_citrinellus
ENSCAPG00000005758	UPF1	95	91.958	ENSACIG00000019949	upf1	96	91.948	Amphilophus_citrinellus
ENSCAPG00000005758	UPF1	95	91.722	ENSAOCG00000018519	upf1	96	91.752	Amphiprion_ocellaris
ENSCAPG00000005758	UPF1	95	93.542	ENSAOCG00000006352	-	100	91.137	Amphiprion_ocellaris
ENSCAPG00000005758	UPF1	95	91.722	ENSAPEG00000016344	upf1	96	91.752	Amphiprion_percula
ENSCAPG00000005758	UPF1	95	93.542	ENSAPEG00000006292	-	100	91.137	Amphiprion_percula
ENSCAPG00000005758	UPF1	95	90.926	ENSATEG00000017867	upf1	96	91.212	Anabas_testudineus
ENSCAPG00000005758	UPF1	95	93.637	ENSATEG00000016606	-	96	93.052	Anabas_testudineus
ENSCAPG00000005758	UPF1	95	97.621	ENSAPLG00000009175	UPF1	99	97.621	Anas_platyrhynchos
ENSCAPG00000005758	UPF1	97	96.523	ENSANAG00000024107	UPF1	96	96.523	Aotus_nancymaae
ENSCAPG00000005758	UPF1	95	93.441	ENSACLG00000022630	-	96	92.763	Astatotilapia_calliptera
ENSCAPG00000005758	UPF1	95	91.769	ENSACLG00000007181	upf1	96	91.760	Astatotilapia_calliptera
ENSCAPG00000005758	UPF1	95	93.827	ENSAMXG00000042187	upf1	96	93.709	Astyanax_mexicanus
ENSCAPG00000005758	UPF1	95	98.573	ENSBTAG00000020922	UPF1	93	98.573	Bos_taurus
ENSCAPG00000005758	UPF1	83	53.055	WBGene00004880	smg-2	94	50.242	Caenorhabditis_elegans
ENSCAPG00000005758	UPF1	95	98.764	ENSCJAG00000019627	UPF1	93	98.764	Callithrix_jacchus
ENSCAPG00000005758	UPF1	95	98.573	ENSCAFG00000014578	UPF1	93	98.573	Canis_familiaris
ENSCAPG00000005758	UPF1	95	98.002	ENSCAFG00020012347	UPF1	93	98.002	Canis_lupus_dingo
ENSCAPG00000005758	UPF1	95	98.573	ENSCHIG00000011018	UPF1	93	98.573	Capra_hircus
ENSCAPG00000005758	UPF1	97	97.563	ENSTSYG00000008877	UPF1	99	97.563	Carlito_syrichta
ENSCAPG00000005758	UPF1	97	98.414	ENSCPOG00000025463	UPF1	97	98.414	Cavia_porcellus
ENSCAPG00000005758	UPF1	97	96.494	ENSCCAG00000032175	UPF1	97	96.494	Cebus_capucinus
ENSCAPG00000005758	UPF1	96	98.390	ENSCATG00000040306	UPF1	98	98.390	Cercocebus_atys
ENSCAPG00000005758	UPF1	95	98.954	ENSCLAG00000004037	UPF1	100	98.954	Chinchilla_lanigera
ENSCAPG00000005758	UPF1	95	98.194	ENSCSAG00000005276	UPF1	93	98.194	Chlorocebus_sabaeus
ENSCAPG00000005758	UPF1	95	97.059	ENSCPBG00000012513	UPF1	94	97.059	Chrysemys_picta_bellii
ENSCAPG00000005758	UPF1	70	82.497	ENSCING00000021399	-	91	82.497	Ciona_intestinalis
ENSCAPG00000005758	UPF1	95	73.510	ENSCSAVG00000006533	-	95	72.719	Ciona_savignyi
ENSCAPG00000005758	UPF1	97	96.939	ENSCANG00000029819	UPF1	99	96.939	Colobus_angolensis_palliatus
ENSCAPG00000005758	UPF1	95	97.624	ENSCGRG00001021067	Upf1	94	97.624	Cricetulus_griseus_chok1gshd
ENSCAPG00000005758	UPF1	96	98.008	ENSCGRG00000013480	Upf1	99	98.008	Cricetulus_griseus_crigri
ENSCAPG00000005758	UPF1	96	86.479	ENSCSEG00000017239	upf1	96	86.761	Cynoglossus_semilaevis
ENSCAPG00000005758	UPF1	95	93.631	ENSCSEG00000016159	-	96	93.045	Cynoglossus_semilaevis
ENSCAPG00000005758	UPF1	95	93.352	ENSCVAG00000010561	upf1	96	92.770	Cyprinodon_variegatus
ENSCAPG00000005758	UPF1	95	93.637	ENSDARG00000016302	upf1	96	93.521	Danio_rerio
ENSCAPG00000005758	UPF1	95	95.726	ENSDORG00000009984	Upf1	95	95.726	Dipodomys_ordii
ENSCAPG00000005758	UPF1	80	73.631	FBgn0030354	Upf1	80	69.959	Drosophila_melanogaster
ENSCAPG00000005758	UPF1	50	88.909	ENSEBUG00000010069	upf1	89	88.909	Eptatretus_burgeri
ENSCAPG00000005758	UPF1	95	98.097	ENSEASG00005006549	UPF1	93	98.097	Equus_asinus_asinus
ENSCAPG00000005758	UPF1	95	98.097	ENSECAG00000010639	UPF1	93	98.097	Equus_caballus
ENSCAPG00000005758	UPF1	95	91.399	ENSELUG00000020917	upf1	96	91.121	Esox_lucius
ENSCAPG00000005758	UPF1	95	93.107	ENSELUG00000012916	-	96	92.444	Esox_lucius
ENSCAPG00000005758	UPF1	95	98.478	ENSFCAG00000009757	UPF1	93	98.478	Felis_catus
ENSCAPG00000005758	UPF1	95	97.156	ENSFALG00000009312	UPF1	96	97.156	Ficedula_albicollis
ENSCAPG00000005758	UPF1	95	98.859	ENSFDAG00000014816	UPF1	100	98.859	Fukomys_damarensis
ENSCAPG00000005758	UPF1	87	93.285	ENSFHEG00000016276	-	96	93.466	Fundulus_heteroclitus
ENSCAPG00000005758	UPF1	95	89.613	ENSFHEG00000006428	upf1	95	88.879	Fundulus_heteroclitus
ENSCAPG00000005758	UPF1	96	92.113	ENSGMOG00000007541	upf1	96	93.146	Gadus_morhua
ENSCAPG00000005758	UPF1	95	97.526	ENSGALG00000003220	UPF1	93	97.526	Gallus_gallus
ENSCAPG00000005758	UPF1	95	92.776	ENSGAFG00000004831	upf1	96	92.669	Gambusia_affinis
ENSCAPG00000005758	UPF1	64	93.759	ENSGAFG00000015443	-	88	91.484	Gambusia_affinis
ENSCAPG00000005758	UPF1	95	97.241	ENSGAGG00000022217	UPF1	94	97.241	Gopherus_agassizii
ENSCAPG00000005758	UPF1	96	97.921	ENSGGOG00000002608	UPF1	99	97.921	Gorilla_gorilla
ENSCAPG00000005758	UPF1	82	86.207	ENSHBUG00000014694	upf1	90	86.207	Haplochromis_burtoni
ENSCAPG00000005758	UPF1	83	100.000	ENSHBUG00000008939	upf1	91	100.000	Haplochromis_burtoni
ENSCAPG00000005758	UPF1	95	98.764	ENSHGLG00000010900	UPF1	93	98.764	Heterocephalus_glaber_female
ENSCAPG00000005758	UPF1	95	97.053	ENSHGLG00100005904	UPF1	97	97.053	Heterocephalus_glaber_male
ENSCAPG00000005758	UPF1	95	92.490	ENSHCOG00000008918	upf1	100	92.632	Hippocampus_comes
ENSCAPG00000005758	UPF1	95	94.207	ENSIPUG00000005108	UPF1	96	93.991	Ictalurus_punctatus
ENSCAPG00000005758	UPF1	95	98.764	ENSSTOG00000009196	UPF1	94	98.764	Ictidomys_tridecemlineatus
ENSCAPG00000005758	UPF1	95	98.099	ENSJJAG00000023151	Upf1	94	98.099	Jaculus_jaculus
ENSCAPG00000005758	UPF1	95	93.637	ENSKMAG00000004962	upf1	96	92.958	Kryptolebias_marmoratus
ENSCAPG00000005758	UPF1	96	92.582	ENSLBEG00000027848	-	96	92.676	Labrus_bergylta
ENSCAPG00000005758	UPF1	95	90.534	ENSLBEG00000014862	upf1	96	91.196	Labrus_bergylta
ENSCAPG00000005758	UPF1	63	96.700	ENSLACG00000008482	UPF1	100	96.700	Latimeria_chalumnae
ENSCAPG00000005758	UPF1	96	95.301	ENSLOCG00000002072	upf1	96	95.301	Lepisosteus_oculatus
ENSCAPG00000005758	UPF1	95	98.478	ENSLAFG00000014963	UPF1	93	98.478	Loxodonta_africana
ENSCAPG00000005758	UPF1	95	98.764	ENSMFAG00000037748	UPF1	97	96.494	Macaca_fascicularis
ENSCAPG00000005758	UPF1	95	98.764	ENSMMUG00000023286	UPF1	94	98.764	Macaca_mulatta
ENSCAPG00000005758	UPF1	95	98.764	ENSMNEG00000000046	UPF1	97	96.494	Macaca_nemestrina
ENSCAPG00000005758	UPF1	95	98.764	ENSMLEG00000028404	UPF1	100	98.764	Mandrillus_leucophaeus
ENSCAPG00000005758	UPF1	95	90.739	ENSMAMG00000006229	upf1	96	91.304	Mastacembelus_armatus
ENSCAPG00000005758	UPF1	95	92.688	ENSMAMG00000006231	-	96	92.582	Mastacembelus_armatus
ENSCAPG00000005758	UPF1	95	93.441	ENSMZEG00005016386	-	96	92.763	Maylandia_zebra
ENSCAPG00000005758	UPF1	95	90.748	ENSMZEG00005003489	upf1	96	91.450	Maylandia_zebra
ENSCAPG00000005758	UPF1	95	97.148	ENSMGAG00000004745	UPF1	100	97.148	Meleagris_gallopavo
ENSCAPG00000005758	UPF1	95	98.194	ENSMAUG00000011398	Upf1	95	98.194	Mesocricetus_auratus
ENSCAPG00000005758	UPF1	95	98.289	ENSMICG00000001659	UPF1	97	94.486	Microcebus_murinus
ENSCAPG00000005758	UPF1	96	97.007	ENSMOCG00000005699	Upf1	95	97.007	Microtus_ochrogaster
ENSCAPG00000005758	UPF1	95	91.263	ENSMMOG00000007537	-	99	91.358	Mola_mola
ENSCAPG00000005758	UPF1	95	91.985	ENSMMOG00000007881	upf1	96	91.541	Mola_mola
ENSCAPG00000005758	UPF1	96	97.254	ENSMODG00000003689	UPF1	95	97.254	Monodelphis_domestica
ENSCAPG00000005758	UPF1	95	91.817	ENSMALG00000000144	upf1	96	91.345	Monopterus_albus
ENSCAPG00000005758	UPF1	95	92.250	ENSMALG00000018100	-	95	92.344	Monopterus_albus
ENSCAPG00000005758	UPF1	95	98.004	MGP_CAROLIEiJ_G0031142	Upf1	94	98.004	Mus_caroli
ENSCAPG00000005758	UPF1	95	98.004	ENSMUSG00000058301	Upf1	94	98.004	Mus_musculus
ENSCAPG00000005758	UPF1	95	98.004	MGP_PahariEiJ_G0021607	Upf1	94	98.004	Mus_pahari
ENSCAPG00000005758	UPF1	95	98.004	MGP_SPRETEiJ_G0032260	Upf1	94	98.004	Mus_spretus
ENSCAPG00000005758	UPF1	95	98.002	ENSMPUG00000015516	UPF1	93	98.002	Mustela_putorius_furo
ENSCAPG00000005758	UPF1	95	98.002	ENSMLUG00000012122	UPF1	93	98.002	Myotis_lucifugus
ENSCAPG00000005758	UPF1	95	98.194	ENSNGAG00000024107	Upf1	93	98.194	Nannospalax_galili
ENSCAPG00000005758	UPF1	95	89.972	ENSNBRG00000000670	upf1	96	89.981	Neolamprologus_brichardi
ENSCAPG00000005758	UPF1	94	92.596	ENSNBRG00000022069	-	100	92.596	Neolamprologus_brichardi
ENSCAPG00000005758	UPF1	95	92.966	ENSNLEG00000006062	UPF1	100	92.966	Nomascus_leucogenys
ENSCAPG00000005758	UPF1	78	93.333	ENSMEUG00000014146	-	76	93.333	Notamacropus_eugenii
ENSCAPG00000005758	UPF1	95	90.589	ENSOPRG00000014018	UPF1	100	90.589	Ochotona_princeps
ENSCAPG00000005758	UPF1	96	98.769	ENSODEG00000012426	UPF1	95	98.769	Octodon_degus
ENSCAPG00000005758	UPF1	95	93.536	ENSONIG00000012729	-	96	92.857	Oreochromis_niloticus
ENSCAPG00000005758	UPF1	95	91.028	ENSONIG00000010452	upf1	96	91.729	Oreochromis_niloticus
ENSCAPG00000005758	UPF1	95	97.436	ENSOANG00000004568	UPF1	93	97.436	Ornithorhynchus_anatinus
ENSCAPG00000005758	UPF1	95	93.162	ENSORLG00000008453	upf1	95	93.162	Oryzias_latipes
ENSCAPG00000005758	UPF1	95	93.162	ENSORLG00020014758	upf1	95	93.162	Oryzias_latipes_hni
ENSCAPG00000005758	UPF1	95	93.162	ENSORLG00015010165	upf1	100	89.210	Oryzias_latipes_hsok
ENSCAPG00000005758	UPF1	95	93.162	ENSOMEG00000003665	upf1	96	92.582	Oryzias_melastigma
ENSCAPG00000005758	UPF1	95	98.099	ENSOGAG00000012866	UPF1	93	98.099	Otolemur_garnettii
ENSCAPG00000005758	UPF1	93	96.158	ENSOARG00000010739	UPF1	96	96.158	Ovis_aries
ENSCAPG00000005758	UPF1	95	98.764	ENSPPAG00000043884	UPF1	96	98.764	Pan_paniscus
ENSCAPG00000005758	UPF1	95	98.478	ENSPPRG00000023470	UPF1	93	98.478	Panthera_pardus
ENSCAPG00000005758	UPF1	95	95.814	ENSPTIG00000010159	UPF1	99	95.814	Panthera_tigris_altaica
ENSCAPG00000005758	UPF1	95	98.764	ENSPTRG00000010721	UPF1	97	96.494	Pan_troglodytes
ENSCAPG00000005758	UPF1	95	98.764	ENSPANG00000008847	UPF1	97	96.494	Papio_anubis
ENSCAPG00000005758	UPF1	86	96.130	ENSPKIG00000006069	upf1	92	95.455	Paramormyrops_kingsleyae
ENSCAPG00000005758	UPF1	69	97.647	ENSPSIG00000009491	UPF1	100	97.647	Pelodiscus_sinensis
ENSCAPG00000005758	UPF1	95	90.237	ENSPMGG00000017327	upf1	96	89.813	Periophthalmus_magnuspinnatus
ENSCAPG00000005758	UPF1	95	98.194	ENSPEMG00000001085	Upf1	94	98.194	Peromyscus_maniculatus_bairdii
ENSCAPG00000005758	UPF1	96	88.158	ENSPMAG00000001206	upf1	95	88.158	Petromyzon_marinus
ENSCAPG00000005758	UPF1	95	97.431	ENSPCIG00000006156	UPF1	93	97.431	Phascolarctos_cinereus
ENSCAPG00000005758	UPF1	96	89.944	ENSPLAG00000018155	-	96	89.944	Poecilia_latipinna
ENSCAPG00000005758	UPF1	95	92.871	ENSPLAG00000016232	-	96	92.763	Poecilia_latipinna
ENSCAPG00000005758	UPF1	95	92.966	ENSPMEG00000016319	-	96	92.857	Poecilia_mexicana
ENSCAPG00000005758	UPF1	96	90.338	ENSPMEG00000011443	-	96	90.338	Poecilia_mexicana
ENSCAPG00000005758	UPF1	95	92.681	ENSPREG00000011247	-	96	92.575	Poecilia_reticulata
ENSCAPG00000005758	UPF1	95	91.337	ENSPREG00000009940	upf1	95	90.587	Poecilia_reticulata
ENSCAPG00000005758	UPF1	95	93.441	ENSPPYG00000009752	UPF1	93	93.441	Pongo_abelii
ENSCAPG00000005758	UPF1	67	100.000	ENSPCAG00000012962	UPF1	65	100.000	Procavia_capensis
ENSCAPG00000005758	UPF1	95	98.669	ENSPCOG00000023813	UPF1	94	98.669	Propithecus_coquereli
ENSCAPG00000005758	UPF1	63	100.000	ENSPVAG00000003183	UPF1	61	100.000	Pteropus_vampyrus
ENSCAPG00000005758	UPF1	95	90.748	ENSPNYG00000003694	upf1	96	91.450	Pundamilia_nyererei
ENSCAPG00000005758	UPF1	95	93.441	ENSPNYG00000016731	-	96	92.763	Pundamilia_nyererei
ENSCAPG00000005758	UPF1	95	94.017	ENSPNAG00000025614	upf1	96	93.897	Pygocentrus_nattereri
ENSCAPG00000005758	UPF1	95	98.099	ENSRNOG00000020134	Upf1	94	98.099	Rattus_norvegicus
ENSCAPG00000005758	UPF1	95	96.388	ENSRBIG00000013894	UPF1	98	97.727	Rhinopithecus_bieti
ENSCAPG00000005758	UPF1	97	97.300	ENSRROG00000040935	UPF1	99	97.300	Rhinopithecus_roxellana
ENSCAPG00000005758	UPF1	77	55.491	YMR080C	NAM7	86	55.491	Saccharomyces_cerevisiae
ENSCAPG00000005758	UPF1	95	98.667	ENSSBOG00000023632	UPF1	96	98.667	Saimiri_boliviensis_boliviensis
ENSCAPG00000005758	UPF1	95	97.816	ENSSHAG00000010499	UPF1	100	97.816	Sarcophilus_harrisii
ENSCAPG00000005758	UPF1	96	95.395	ENSSFOG00015021095	upf1	99	96.008	Scleropages_formosus
ENSCAPG00000005758	UPF1	95	93.542	ENSSMAG00000021018	-	96	92.958	Scophthalmus_maximus
ENSCAPG00000005758	UPF1	95	89.897	ENSSMAG00000005055	upf1	96	90.556	Scophthalmus_maximus
ENSCAPG00000005758	UPF1	95	90.926	ENSSDUG00000013320	upf1	96	91.304	Seriola_dumerili
ENSCAPG00000005758	UPF1	95	93.732	ENSSDUG00000009629	-	96	93.146	Seriola_dumerili
ENSCAPG00000005758	UPF1	95	91.785	ENSSLDG00000020868	upf1	96	91.519	Seriola_lalandi_dorsalis
ENSCAPG00000005758	UPF1	95	93.732	ENSSLDG00000006878	-	96	93.146	Seriola_lalandi_dorsalis
ENSCAPG00000005758	UPF1	95	97.336	ENSSPUG00000010538	UPF1	94	97.336	Sphenodon_punctatus
ENSCAPG00000005758	UPF1	95	93.726	ENSSPAG00000011521	-	96	93.045	Stegastes_partitus
ENSCAPG00000005758	UPF1	95	90.019	ENSSPAG00000000003	upf1	96	89.691	Stegastes_partitus
ENSCAPG00000005758	UPF1	95	98.478	ENSSSCG00000039301	UPF1	99	97.907	Sus_scrofa
ENSCAPG00000005758	UPF1	78	91.309	ENSTGUG00000001057	UPF1	89	97.162	Taeniopygia_guttata
ENSCAPG00000005758	UPF1	96	91.823	ENSTRUG00000005131	-	96	91.917	Takifugu_rubripes
ENSCAPG00000005758	UPF1	95	91.920	ENSTRUG00000000150	upf1	95	91.920	Takifugu_rubripes
ENSCAPG00000005758	UPF1	95	94.101	ENSTTRG00000011544	UPF1	93	94.101	Tursiops_truncatus
ENSCAPG00000005758	UPF1	95	97.907	ENSUAMG00000007093	UPF1	93	97.907	Ursus_americanus
ENSCAPG00000005758	UPF1	96	97.820	ENSUMAG00000006652	UPF1	99	97.949	Ursus_maritimus
ENSCAPG00000005758	UPF1	95	98.002	ENSVVUG00000007797	UPF1	93	98.002	Vulpes_vulpes
ENSCAPG00000005758	UPF1	95	83.318	ENSXETG00000013602	upf1	93	83.318	Xenopus_tropicalis
ENSCAPG00000005758	UPF1	93	89.961	ENSXCOG00000015275	-	92	89.961	Xiphophorus_couchianus
ENSCAPG00000005758	UPF1	94	93.090	ENSXCOG00000005764	-	100	93.570	Xiphophorus_couchianus
ENSCAPG00000005758	UPF1	96	90.216	ENSXMAG00000001703	-	96	90.216	Xiphophorus_maculatus
ENSCAPG00000005758	UPF1	95	92.776	ENSXMAG00000002540	-	96	92.669	Xiphophorus_maculatus