EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAPG00000006058 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: MGC9850|RPA16|RPA9|RPAC2|RPO1-3
Full Name: -
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Minus strand
Length: 387 bases
Position: chrAVPZ01000040.1:1316796-1317182
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000003234	RNA_pol_L_2	PF13656.6	2.1e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000006793	-	300	-	ENSCAPP00000003234	99 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000006058's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000006058's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAPG00000006058	-	65	31.250	ENSCAPG00000013625	-	56	31.250

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000006058	-	99	54.688	ENSG00000186184	POLR1D	96	54.688	Homo_sapiens
ENSCAPG00000006058	-	69	55.882	ENSAPOG00000021882	polr1d	56	61.017	Acanthochromis_polyacanthus
ENSCAPG00000006058	-	70	79.710	ENSAMEG00000019095	POLR1D	55	79.710	Ailuropoda_melanoleuca
ENSCAPG00000006058	-	66	65.152	ENSACIG00000013328	polr1d	57	65.152	Amphilophus_citrinellus
ENSCAPG00000006058	-	66	58.462	ENSAOCG00000018500	polr1d	57	58.462	Amphiprion_ocellaris
ENSCAPG00000006058	-	65	57.812	ENSAPEG00000009489	polr1d	56	57.812	Amphiprion_percula
ENSCAPG00000006058	-	66	56.923	ENSATEG00000019322	polr1d	57	56.923	Anabas_testudineus
ENSCAPG00000006058	-	55	64.815	ENSAPLG00000012757	POLR1D	100	64.815	Anas_platyrhynchos
ENSCAPG00000006058	-	66	63.077	ENSACAG00000015753	POLR1D	56	63.077	Anolis_carolinensis
ENSCAPG00000006058	-	99	54.688	ENSANAG00000024486	POLR1D	96	54.688	Aotus_nancymaae
ENSCAPG00000006058	-	67	62.121	ENSACLG00000023805	polr1d	58	62.121	Astatotilapia_calliptera
ENSCAPG00000006058	-	64	53.968	ENSAMXG00000036118	polr1d	55	53.968	Astyanax_mexicanus
ENSCAPG00000006058	-	99	53.906	ENSBTAG00000033252	-	96	53.906	Bos_taurus
ENSCAPG00000006058	-	99	53.906	ENSBTAG00000008642	POLR1D	96	53.906	Bos_taurus
ENSCAPG00000006058	-	99	55.469	ENSCJAG00000044669	POLR1D	96	55.469	Callithrix_jacchus
ENSCAPG00000006058	-	99	54.688	ENSCAFG00000006755	POLR1D	96	54.688	Canis_familiaris
ENSCAPG00000006058	-	99	52.344	ENSCHIG00000021910	POLR1D	96	52.344	Capra_hircus
ENSCAPG00000006058	-	70	76.812	ENSTSYG00000026817	-	52	76.812	Carlito_syrichta
ENSCAPG00000006058	-	70	69.014	ENSTSYG00000034852	-	59	69.014	Carlito_syrichta
ENSCAPG00000006058	-	100	98.990	ENSCPOG00000030450	-	100	98.990	Cavia_porcellus
ENSCAPG00000006058	-	99	53.906	ENSCCAG00000021349	-	96	53.906	Cebus_capucinus
ENSCAPG00000006058	-	99	50.877	ENSCCAG00000020191	-	96	50.877	Cebus_capucinus
ENSCAPG00000006058	-	99	54.688	ENSCATG00000030710	-	96	54.688	Cercocebus_atys
ENSCAPG00000006058	-	99	56.198	ENSCATG00000022900	-	96	56.198	Cercocebus_atys
ENSCAPG00000006058	-	70	84.058	ENSCLAG00000017623	POLR1D	56	84.058	Chinchilla_lanigera
ENSCAPG00000006058	-	58	77.193	ENSCPBG00000004719	POLR1D	56	77.193	Chrysemys_picta_bellii
ENSCAPG00000006058	-	99	53.125	ENSCANG00000028632	-	96	53.125	Colobus_angolensis_palliatus
ENSCAPG00000006058	-	99	53.906	ENSCANG00000037694	-	96	53.906	Colobus_angolensis_palliatus
ENSCAPG00000006058	-	99	53.906	ENSCGRG00001021251	Polr1d	96	53.906	Cricetulus_griseus_chok1gshd
ENSCAPG00000006058	-	99	53.906	ENSCGRG00000011639	Polr1d	96	53.906	Cricetulus_griseus_crigri
ENSCAPG00000006058	-	69	58.824	ENSCSEG00000018268	polr1d	60	60.000	Cynoglossus_semilaevis
ENSCAPG00000006058	-	65	59.375	ENSCVAG00000018527	polr1d	56	59.375	Cyprinodon_variegatus
ENSCAPG00000006058	-	66	55.385	ENSDARG00000037570	polr1d	58	55.385	Danio_rerio
ENSCAPG00000006058	-	97	54.762	ENSDNOG00000043676	-	95	54.762	Dasypus_novemcinctus
ENSCAPG00000006058	-	99	52.344	ENSDORG00000029155	Polr1d	96	52.344	Dipodomys_ordii
ENSCAPG00000006058	-	59	39.655	FBgn0086447	l(2)37Cg	54	39.655	Drosophila_melanogaster
ENSCAPG00000006058	-	70	81.159	ENSETEG00000012797	POLR1D	56	81.159	Echinops_telfairi
ENSCAPG00000006058	-	100	55.039	ENSEASG00005022487	POLR1D	100	55.039	Equus_asinus_asinus
ENSCAPG00000006058	-	70	81.159	ENSEEUG00000013144	POLR1D	56	81.159	Erinaceus_europaeus
ENSCAPG00000006058	-	66	58.462	ENSELUG00000005105	rpac2	57	58.462	Esox_lucius
ENSCAPG00000006058	-	100	54.264	ENSFCAG00000030162	POLR1D	97	54.264	Felis_catus
ENSCAPG00000006058	-	66	64.615	ENSFALG00000011463	POLR1D	64	64.615	Ficedula_albicollis
ENSCAPG00000006058	-	99	56.250	ENSFDAG00000004463	POLR1D	96	56.250	Fukomys_damarensis
ENSCAPG00000006058	-	65	62.500	ENSFHEG00000015410	polr1d	56	62.500	Fundulus_heteroclitus
ENSCAPG00000006058	-	70	59.420	ENSGALG00000007470	POLR1D	68	59.420	Gallus_gallus
ENSCAPG00000006058	-	65	60.938	ENSGAFG00000001693	polr1d	56	60.938	Gambusia_affinis
ENSCAPG00000006058	-	69	52.941	ENSGACG00000018585	polr1d	58	52.941	Gasterosteus_aculeatus
ENSCAPG00000006058	-	66	72.308	ENSGAGG00000008503	POLR1D	57	72.308	Gopherus_agassizii
ENSCAPG00000006058	-	99	54.688	ENSGGOG00000004235	POLR1D	96	54.688	Gorilla_gorilla
ENSCAPG00000006058	-	66	60.000	ENSHBUG00000002111	polr1d	57	60.000	Haplochromis_burtoni
ENSCAPG00000006058	-	99	56.250	ENSHGLG00000003202	POLR1D	96	56.250	Heterocephalus_glaber_female
ENSCAPG00000006058	-	99	56.250	ENSHGLG00100009393	POLR1D	96	56.250	Heterocephalus_glaber_male
ENSCAPG00000006058	-	66	56.923	ENSHCOG00000003258	polr1d	57	56.923	Hippocampus_comes
ENSCAPG00000006058	-	65	62.500	ENSIPUG00000014810	polr1d	56	62.500	Ictalurus_punctatus
ENSCAPG00000006058	-	99	55.469	ENSSTOG00000013877	POLR1D	96	55.469	Ictidomys_tridecemlineatus
ENSCAPG00000006058	-	70	75.362	ENSJJAG00000022671	-	58	75.362	Jaculus_jaculus
ENSCAPG00000006058	-	66	58.462	ENSKMAG00000015256	polr1d	57	58.462	Kryptolebias_marmoratus
ENSCAPG00000006058	-	65	57.812	ENSLBEG00000015919	polr1d	56	57.812	Labrus_bergylta
ENSCAPG00000006058	-	67	65.152	ENSLACG00000006810	POLR1D	55	65.152	Latimeria_chalumnae
ENSCAPG00000006058	-	95	53.226	ENSLAFG00000032290	POLR1D	93	53.226	Loxodonta_africana
ENSCAPG00000006058	-	70	78.261	ENSMFAG00000045264	POLR1D	53	78.261	Macaca_fascicularis
ENSCAPG00000006058	-	70	78.261	ENSMMUG00000020386	POLR1D	59	78.261	Macaca_mulatta
ENSCAPG00000006058	-	99	61.321	ENSMMUG00000041570	-	95	61.321	Macaca_mulatta
ENSCAPG00000006058	-	98	58.824	ENSMNEG00000038120	-	95	58.824	Macaca_nemestrina
ENSCAPG00000006058	-	99	53.906	ENSMNEG00000008630	-	96	53.906	Macaca_nemestrina
ENSCAPG00000006058	-	99	53.906	ENSMLEG00000041048	-	96	53.906	Mandrillus_leucophaeus
ENSCAPG00000006058	-	99	53.719	ENSMLEG00000032251	-	96	53.719	Mandrillus_leucophaeus
ENSCAPG00000006058	-	61	63.333	ENSMAMG00000014834	polr1d	56	63.333	Mastacembelus_armatus
ENSCAPG00000006058	-	67	62.121	ENSMZEG00005006638	polr1d	58	62.121	Maylandia_zebra
ENSCAPG00000006058	-	60	69.492	ENSMGAG00000005322	POLR1D	54	69.492	Meleagris_gallopavo
ENSCAPG00000006058	-	99	53.906	ENSMAUG00000001946	Polr1d	96	53.906	Mesocricetus_auratus
ENSCAPG00000006058	-	99	55.469	ENSMICG00000016883	-	96	55.469	Microcebus_murinus
ENSCAPG00000006058	-	99	40.625	ENSMICG00000007349	-	97	40.625	Microcebus_murinus
ENSCAPG00000006058	-	99	53.125	ENSMOCG00000021288	Polr1d	96	53.125	Microtus_ochrogaster
ENSCAPG00000006058	-	66	55.385	ENSMMOG00000009605	polr1d	57	55.385	Mola_mola
ENSCAPG00000006058	-	66	73.846	ENSMODG00000023881	POLR1D	57	73.846	Monodelphis_domestica
ENSCAPG00000006058	-	64	60.317	ENSMALG00000010652	polr1d	55	60.317	Monopterus_albus
ENSCAPG00000006058	-	100	51.938	MGP_CAROLIEiJ_G0028034	Polr1d	97	51.938	Mus_caroli
ENSCAPG00000006058	-	100	51.938	ENSMUSG00000029642	Polr1d	97	51.938	Mus_musculus
ENSCAPG00000006058	-	100	51.938	MGP_PahariEiJ_G0024600	Polr1d	97	51.938	Mus_pahari
ENSCAPG00000006058	-	100	52.713	MGP_SPRETEiJ_G0029032	Polr1d	97	52.713	Mus_spretus
ENSCAPG00000006058	-	99	53.906	ENSMLUG00000027169	-	96	53.906	Myotis_lucifugus
ENSCAPG00000006058	-	70	78.261	ENSMLUG00000004118	-	52	78.261	Myotis_lucifugus
ENSCAPG00000006058	-	66	83.077	ENSNGAG00000006014	Polr1d	56	83.077	Nannospalax_galili
ENSCAPG00000006058	-	66	60.000	ENSNBRG00000020327	polr1d	57	60.000	Neolamprologus_brichardi
ENSCAPG00000006058	-	99	54.688	ENSNLEG00000000358	POLR1D	96	54.688	Nomascus_leucogenys
ENSCAPG00000006058	-	99	57.895	ENSODEG00000014801	-	96	57.895	Octodon_degus
ENSCAPG00000006058	-	99	57.031	ENSODEG00000005294	-	96	57.031	Octodon_degus
ENSCAPG00000006058	-	66	70.769	ENSOANG00000008708	-	60	70.769	Ornithorhynchus_anatinus
ENSCAPG00000006058	-	99	53.906	ENSOCUG00000015706	POLR1D	79	53.906	Oryctolagus_cuniculus
ENSCAPG00000006058	-	66	61.538	ENSORLG00000010257	polr1d	57	61.538	Oryzias_latipes
ENSCAPG00000006058	-	99	56.250	ENSOGAG00000014601	POLR1D	96	56.250	Otolemur_garnettii
ENSCAPG00000006058	-	70	79.710	ENSOARG00000017005	POLR1D	53	79.710	Ovis_aries
ENSCAPG00000006058	-	97	55.556	ENSPPAG00000028138	POLR1D	95	55.556	Pan_paniscus
ENSCAPG00000006058	-	100	54.264	ENSPPRG00000003381	POLR1D	97	54.264	Panthera_pardus
ENSCAPG00000006058	-	71	78.571	ENSPTIG00000018137	POLR1D	53	78.571	Panthera_tigris_altaica
ENSCAPG00000006058	-	99	54.688	ENSPTRG00000005734	POLR1D	96	54.688	Pan_troglodytes
ENSCAPG00000006058	-	99	52.066	ENSPANG00000035051	-	96	52.066	Papio_anubis
ENSCAPG00000006058	-	99	53.906	ENSPANG00000020259	-	96	53.906	Papio_anubis
ENSCAPG00000006058	-	67	59.091	ENSPKIG00000021891	polr1d	52	54.545	Paramormyrops_kingsleyae
ENSCAPG00000006058	-	66	72.308	ENSPSIG00000011822	POLR1D	50	72.308	Pelodiscus_sinensis
ENSCAPG00000006058	-	65	54.688	ENSPMGG00000010359	polr1d	56	54.688	Periophthalmus_magnuspinnatus
ENSCAPG00000006058	-	70	75.362	ENSPEMG00000006336	-	53	75.362	Peromyscus_maniculatus_bairdii
ENSCAPG00000006058	-	68	55.224	ENSPMAG00000004228	polr1d	56	55.224	Petromyzon_marinus
ENSCAPG00000006058	-	66	73.846	ENSPCIG00000001673	POLR1D	57	73.846	Phascolarctos_cinereus
ENSCAPG00000006058	-	65	60.938	ENSPFOG00000023343	polr1d	74	60.938	Poecilia_formosa
ENSCAPG00000006058	-	65	60.938	ENSPLAG00000009675	polr1d	56	60.938	Poecilia_latipinna
ENSCAPG00000006058	-	65	60.938	ENSPMEG00000004628	polr1d	56	60.938	Poecilia_mexicana
ENSCAPG00000006058	-	65	60.938	ENSPREG00000022032	polr1d	56	60.938	Poecilia_reticulata
ENSCAPG00000006058	-	99	53.906	ENSPCOG00000028175	POLR1D	96	53.906	Propithecus_coquereli
ENSCAPG00000006058	-	66	60.000	ENSPNYG00000000107	polr1d	57	60.000	Pundamilia_nyererei
ENSCAPG00000006058	-	64	52.381	ENSPNAG00000001512	polr1d	53	52.381	Pygocentrus_nattereri
ENSCAPG00000006058	-	99	53.906	ENSRBIG00000036378	-	96	53.906	Rhinopithecus_bieti
ENSCAPG00000006058	-	99	53.125	ENSRBIG00000000336	-	96	53.125	Rhinopithecus_bieti
ENSCAPG00000006058	-	99	53.906	ENSRROG00000042232	-	96	53.906	Rhinopithecus_roxellana
ENSCAPG00000006058	-	99	53.125	ENSRROG00000026751	-	96	53.125	Rhinopithecus_roxellana
ENSCAPG00000006058	-	99	54.688	ENSSBOG00000028482	-	96	54.688	Saimiri_boliviensis_boliviensis
ENSCAPG00000006058	-	87	53.846	ENSSBOG00000030146	-	85	53.846	Saimiri_boliviensis_boliviensis
ENSCAPG00000006058	-	71	68.571	ENSSHAG00000001190	POLR1D	54	68.571	Sarcophilus_harrisii
ENSCAPG00000006058	-	68	58.209	ENSSFOG00015011375	polr1d	59	58.209	Scleropages_formosus
ENSCAPG00000006058	-	66	58.462	ENSSMAG00000011861	polr1d	57	58.462	Scophthalmus_maximus
ENSCAPG00000006058	-	66	56.923	ENSSDUG00000011930	polr1d	57	56.923	Seriola_dumerili
ENSCAPG00000006058	-	70	55.072	ENSSLDG00000023871	polr1d	58	55.072	Seriola_lalandi_dorsalis
ENSCAPG00000006058	-	99	53.906	ENSSARG00000007840	POLR1D	96	53.906	Sorex_araneus
ENSCAPG00000006058	-	66	66.154	ENSSPUG00000005786	POLR1D	56	66.154	Sphenodon_punctatus
ENSCAPG00000006058	-	65	60.938	ENSSPAG00000011764	polr1d	56	60.938	Stegastes_partitus
ENSCAPG00000006058	-	100	53.488	ENSSSCG00000009310	POLR1D	97	53.488	Sus_scrofa
ENSCAPG00000006058	-	66	66.154	ENSTGUG00000005450	POLR1D	68	66.154	Taeniopygia_guttata
ENSCAPG00000006058	-	65	57.812	ENSTRUG00000019741	polr1d	56	57.812	Takifugu_rubripes
ENSCAPG00000006058	-	70	78.261	ENSTBEG00000007006	POLR1D	56	78.261	Tupaia_belangeri
ENSCAPG00000006058	-	99	54.688	ENSUAMG00000011413	POLR1D	96	54.688	Ursus_americanus
ENSCAPG00000006058	-	70	79.710	ENSUMAG00000016968	POLR1D	54	79.710	Ursus_maritimus
ENSCAPG00000006058	-	99	54.688	ENSVVUG00000009216	POLR1D	96	54.688	Vulpes_vulpes