EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAPG00000006451 (Gene tree)
Gene ID: -
Gene Symbol: SF3B4
Alias: Hsh49|SAP49|SF3b49
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Minus strand
Length: 3454 bases
Position: chrAVPZ01000223.1:10992382-10995835
Accession: 10771
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000003753	RRM_1	PF00076.22	2.3e-27	1	2
ENSCAPP00000003753	RRM_1	PF00076.22	2.3e-27	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000007319	SF3B4-201	1071	-	ENSCAPP00000003753	356 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000006451's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000006451's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAPG00000006451	SF3B4	57	38.732	ENSCAPG00000013098	PABPC1	55	40.310
ENSCAPG00000006451	SF3B4	56	37.500	ENSCAPG00000014519	PABPC1L	57	36.434

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000006451	SF3B4	50	100.000	ENSG00000143368	SF3B4	94	100.000	Homo_sapiens
ENSCAPG00000006451	SF3B4	51	94.475	ENSACLG00000014260	sf3b4	58	93.548	Astatotilapia_calliptera
ENSCAPG00000006451	SF3B4	96	82.927	ENSCAFG00000011617	SF3B4	98	79.675	Canis_familiaris
ENSCAPG00000006451	SF3B4	96	82.927	ENSCAFG00020019775	SF3B4	98	79.675	Canis_lupus_dingo
ENSCAPG00000006451	SF3B4	96	83.198	ENSCPOG00000008267	SF3B4	98	83.198	Cavia_porcellus
ENSCAPG00000006451	SF3B4	83	66.667	ENSCCAG00000019823	-	78	68.693	Cebus_capucinus
ENSCAPG00000006451	SF3B4	96	83.198	ENSCLAG00000015851	SF3B4	98	83.198	Chinchilla_lanigera
ENSCAPG00000006451	SF3B4	66	100.000	ENSCPBG00000008041	SF3B4	89	76.308	Chrysemys_picta_bellii
ENSCAPG00000006451	SF3B4	51	82.222	ENSDNOG00000037231	-	76	66.279	Dasypus_novemcinctus
ENSCAPG00000006451	SF3B4	96	83.198	ENSFDAG00000009286	SF3B4	98	83.198	Fukomys_damarensis
ENSCAPG00000006451	SF3B4	78	100.000	ENSGALG00000013352	SF3B4	89	76.235	Gallus_gallus
ENSCAPG00000006451	SF3B4	66	100.000	ENSGAGG00000025055	SF3B4	81	76.000	Gopherus_agassizii
ENSCAPG00000006451	SF3B4	94	62.778	ENSGGOG00000038845	-	62	68.750	Gorilla_gorilla
ENSCAPG00000006451	SF3B4	51	94.475	ENSHBUG00000002028	sf3b4	58	93.548	Haplochromis_burtoni
ENSCAPG00000006451	SF3B4	96	83.198	ENSHGLG00000012360	SF3B4	99	83.198	Heterocephalus_glaber_female
ENSCAPG00000006451	SF3B4	51	95.580	ENSKMAG00000008154	sf3b4	60	94.624	Kryptolebias_marmoratus
ENSCAPG00000006451	SF3B4	50	96.629	ENSLBEG00000026818	sf3b4	59	94.624	Labrus_bergylta
ENSCAPG00000006451	SF3B4	50	96.610	ENSLOCG00000009048	sf3b4	66	75.000	Lepisosteus_oculatus
ENSCAPG00000006451	SF3B4	88	64.897	ENSMFAG00000039067	-	79	69.966	Macaca_fascicularis
ENSCAPG00000006451	SF3B4	88	64.307	ENSMNEG00000031526	-	64	71.915	Macaca_nemestrina
ENSCAPG00000006451	SF3B4	51	96.133	ENSMAMG00000014692	sf3b4	61	89.848	Mastacembelus_armatus
ENSCAPG00000006451	SF3B4	51	94.475	ENSMZEG00005026741	sf3b4	58	93.548	Maylandia_zebra
ENSCAPG00000006451	SF3B4	78	100.000	ENSMGAG00000000653	SF3B4	89	76.471	Meleagris_gallopavo
ENSCAPG00000006451	SF3B4	51	95.028	ENSNBRG00000013865	sf3b4	58	94.086	Neolamprologus_brichardi
ENSCAPG00000006451	SF3B4	96	92.308	ENSNLEG00000009693	-	98	60.870	Nomascus_leucogenys
ENSCAPG00000006451	SF3B4	80	92.683	ENSNLEG00000000537	-	58	72.961	Nomascus_leucogenys
ENSCAPG00000006451	SF3B4	62	100.000	ENSMEUG00000003272	SF3B4	63	100.000	Notamacropus_eugenii
ENSCAPG00000006451	SF3B4	97	57.878	ENSODEG00000008916	-	72	59.191	Octodon_degus
ENSCAPG00000006451	SF3B4	51	94.475	ENSONIG00000002730	sf3b4	58	94.086	Oreochromis_niloticus
ENSCAPG00000006451	SF3B4	50	96.045	ENSORLG00000003062	sf3b4	61	92.593	Oryzias_latipes
ENSCAPG00000006451	SF3B4	50	96.045	ENSORLG00020000687	sf3b4	75	71.273	Oryzias_latipes_hni
ENSCAPG00000006451	SF3B4	50	96.045	ENSORLG00015010989	sf3b4	75	71.273	Oryzias_latipes_hsok
ENSCAPG00000006451	SF3B4	50	96.045	ENSOMEG00000013694	sf3b4	58	95.082	Oryzias_melastigma
ENSCAPG00000006451	SF3B4	80	57.362	ENSOARG00000007368	-	75	65.399	Ovis_aries
ENSCAPG00000006451	SF3B4	50	96.629	ENSPKIG00000020669	sf3b4	65	89.848	Paramormyrops_kingsleyae
ENSCAPG00000006451	SF3B4	50	96.648	ENSPSIG00000009565	SF3B4	83	76.800	Pelodiscus_sinensis
ENSCAPG00000006451	SF3B4	51	94.475	ENSPFOG00000005754	sf3b4	59	93.548	Poecilia_formosa
ENSCAPG00000006451	SF3B4	51	94.475	ENSPLAG00000001401	sf3b4	65	93.548	Poecilia_latipinna
ENSCAPG00000006451	SF3B4	51	94.475	ENSPREG00000011076	sf3b4	58	94.086	Poecilia_reticulata
ENSCAPG00000006451	SF3B4	60	98.693	ENSPCAG00000000392	SF3B4	60	98.693	Procavia_capensis
ENSCAPG00000006451	SF3B4	51	94.475	ENSPNYG00000012700	sf3b4	58	93.548	Pundamilia_nyererei
ENSCAPG00000006451	SF3B4	86	60.125	ENSRROG00000028213	-	77	57.006	Rhinopithecus_roxellana
ENSCAPG00000006451	SF3B4	96	54.090	ENSSBOG00000025174	-	63	65.299	Saimiri_boliviensis_boliviensis
ENSCAPG00000006451	SF3B4	51	96.133	ENSSFOG00015008864	sf3b4	60	89.848	Scleropages_formosus
ENSCAPG00000006451	SF3B4	96	76.791	ENSSPUG00000001028	SF3B4	88	80.259	Sphenodon_punctatus
ENSCAPG00000006451	SF3B4	64	65.106	ENSSSCG00000039440	-	61	64.851	Sus_scrofa
ENSCAPG00000006451	SF3B4	51	96.133	ENSTGUG00000004470	SF3B4	88	96.133	Taeniopygia_guttata
ENSCAPG00000006451	SF3B4	51	93.923	ENSXETG00000011038	sf3b4	57	92.655	Xenopus_tropicalis