EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCAPG00000006547 (Gene tree)
Gene ID: -
Gene Symbol: SF3B1
Alias: Hsh155|PRPF10|Prp10|SAP155|SF3b155
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Plus strand
Length: 26332 bases
Position: chrAVPZ01000006.1:3255488-3281819
Accession: 10768
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000003928	SF3b1	PF08920.10	2.7e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000007498	SF3B1-201	3921	-	ENSCAPP00000003928	1306 (aa)	-	UPI000BAD4189

Gene Model

Click here to download ENSCAPG00000006547's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000006547's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000006547	SF3B1	99	99.846	ENSG00000115524	SF3B1	99	99.846	Homo_sapiens
ENSCAPG00000006547	SF3B1	99	93.588	ENSAPOG00000011894	sf3b1	99	93.450	Acanthochromis_polyacanthus
ENSCAPG00000006547	SF3B1	99	99.923	ENSAMEG00000013809	SF3B1	99	99.923	Ailuropoda_melanoleuca
ENSCAPG00000006547	SF3B1	99	93.043	ENSACIG00000020910	sf3b1	96	92.890	Amphilophus_citrinellus
ENSCAPG00000006547	SF3B1	99	93.450	ENSAOCG00000004478	sf3b1	99	93.450	Amphiprion_ocellaris
ENSCAPG00000006547	SF3B1	99	93.450	ENSAPEG00000012937	sf3b1	99	93.450	Amphiprion_percula
ENSCAPG00000006547	SF3B1	99	93.583	ENSATEG00000020435	sf3b1	99	93.583	Anabas_testudineus
ENSCAPG00000006547	SF3B1	99	99.383	ENSAPLG00000003993	SF3B1	99	99.383	Anas_platyrhynchos
ENSCAPG00000006547	SF3B1	99	98.919	ENSACAG00000009612	SF3B1	99	98.919	Anolis_carolinensis
ENSCAPG00000006547	SF3B1	99	99.923	ENSANAG00000021577	SF3B1	100	100.000	Aotus_nancymaae
ENSCAPG00000006547	SF3B1	99	92.683	ENSACLG00000023470	sf3b1	99	92.530	Astatotilapia_calliptera
ENSCAPG00000006547	SF3B1	99	93.979	ENSAMXG00000002219	sf3b1	99	93.826	Astyanax_mexicanus
ENSCAPG00000006547	SF3B1	99	99.769	ENSBTAG00000008915	SF3B1	99	99.769	Bos_taurus
ENSCAPG00000006547	SF3B1	98	66.440	WBGene00011605	sftb-1	98	66.516	Caenorhabditis_elegans
ENSCAPG00000006547	SF3B1	99	99.846	ENSCJAG00000003902	SF3B1	99	99.846	Callithrix_jacchus
ENSCAPG00000006547	SF3B1	99	99.846	ENSCAFG00000010826	SF3B1	99	99.846	Canis_familiaris
ENSCAPG00000006547	SF3B1	99	99.846	ENSCAFG00020004750	SF3B1	99	99.846	Canis_lupus_dingo
ENSCAPG00000006547	SF3B1	99	99.845	ENSCHIG00000015226	SF3B1	99	99.845	Capra_hircus
ENSCAPG00000006547	SF3B1	99	99.923	ENSTSYG00000009214	SF3B1	99	99.923	Carlito_syrichta
ENSCAPG00000006547	SF3B1	100	100.000	ENSCPOG00000009353	SF3B1	100	100.000	Cavia_porcellus
ENSCAPG00000006547	SF3B1	99	99.846	ENSCCAG00000020506	SF3B1	99	99.846	Cebus_capucinus
ENSCAPG00000006547	SF3B1	99	99.846	ENSCATG00000035735	SF3B1	99	99.846	Cercocebus_atys
ENSCAPG00000006547	SF3B1	99	100.000	ENSCLAG00000014767	SF3B1	99	100.000	Chinchilla_lanigera
ENSCAPG00000006547	SF3B1	99	99.846	ENSCSAG00000011505	SF3B1	99	99.846	Chlorocebus_sabaeus
ENSCAPG00000006547	SF3B1	76	96.154	ENSCHOG00000009860	SF3B1	75	96.154	Choloepus_hoffmanni
ENSCAPG00000006547	SF3B1	99	99.077	ENSCPBG00000021902	SF3B1	99	99.406	Chrysemys_picta_bellii
ENSCAPG00000006547	SF3B1	68	78.060	ENSCING00000002558	-	99	78.771	Ciona_intestinalis
ENSCAPG00000006547	SF3B1	99	79.864	ENSCSAVG00000002559	-	99	79.470	Ciona_savignyi
ENSCAPG00000006547	SF3B1	99	99.923	ENSCANG00000029415	SF3B1	99	99.923	Colobus_angolensis_palliatus
ENSCAPG00000006547	SF3B1	99	99.923	ENSCGRG00001016990	Sf3b1	99	99.923	Cricetulus_griseus_chok1gshd
ENSCAPG00000006547	SF3B1	99	99.923	ENSCGRG00000005301	Sf3b1	99	99.923	Cricetulus_griseus_crigri
ENSCAPG00000006547	SF3B1	99	89.908	ENSCSEG00000003860	sf3b1	99	89.832	Cynoglossus_semilaevis
ENSCAPG00000006547	SF3B1	96	93.497	ENSCVAG00000003680	sf3b1	99	93.497	Cyprinodon_variegatus
ENSCAPG00000006547	SF3B1	99	93.374	ENSDARG00000056138	sf3b1	99	93.298	Danio_rerio
ENSCAPG00000006547	SF3B1	99	99.769	ENSDNOG00000011754	SF3B1	99	99.769	Dasypus_novemcinctus
ENSCAPG00000006547	SF3B1	99	97.297	ENSDORG00000002399	Sf3b1	100	97.297	Dipodomys_ordii
ENSCAPG00000006547	SF3B1	99	76.696	FBgn0031266	Sf3b1	99	76.696	Drosophila_melanogaster
ENSCAPG00000006547	SF3B1	83	99.351	ENSETEG00000009188	SF3B1	100	99.351	Echinops_telfairi
ENSCAPG00000006547	SF3B1	99	87.080	ENSEBUG00000004325	sf3b1	100	90.191	Eptatretus_burgeri
ENSCAPG00000006547	SF3B1	99	99.769	ENSEASG00005020159	SF3B1	97	99.769	Equus_asinus_asinus
ENSCAPG00000006547	SF3B1	99	99.769	ENSECAG00000021657	SF3B1	97	99.769	Equus_caballus
ENSCAPG00000006547	SF3B1	86	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSCAPG00000006547	SF3B1	99	92.960	ENSELUG00000005977	sf3b1	98	92.808	Esox_lucius
ENSCAPG00000006547	SF3B1	99	100.000	ENSFCAG00000005038	SF3B1	99	100.000	Felis_catus
ENSCAPG00000006547	SF3B1	99	99.079	ENSFALG00000004281	SF3B1	99	99.079	Ficedula_albicollis
ENSCAPG00000006547	SF3B1	99	99.846	ENSFDAG00000017510	SF3B1	99	99.846	Fukomys_damarensis
ENSCAPG00000006547	SF3B1	99	92.765	ENSFHEG00000014333	sf3b1	99	92.765	Fundulus_heteroclitus
ENSCAPG00000006547	SF3B1	99	93.359	ENSGMOG00000006773	sf3b1	99	93.359	Gadus_morhua
ENSCAPG00000006547	SF3B1	99	99.231	ENSGALG00000008038	SF3B1	99	99.231	Gallus_gallus
ENSCAPG00000006547	SF3B1	98	93.441	ENSGAFG00000000704	sf3b1	99	93.441	Gambusia_affinis
ENSCAPG00000006547	SF3B1	99	93.502	ENSGACG00000008839	sf3b1	99	93.502	Gasterosteus_aculeatus
ENSCAPG00000006547	SF3B1	99	98.923	ENSGAGG00000017478	SF3B1	99	98.923	Gopherus_agassizii
ENSCAPG00000006547	SF3B1	99	93.170	ENSGGOG00000009264	SF3B1	99	94.231	Gorilla_gorilla
ENSCAPG00000006547	SF3B1	99	92.748	ENSHBUG00000007705	sf3b1	99	92.595	Haplochromis_burtoni
ENSCAPG00000006547	SF3B1	99	100.000	ENSHGLG00000008285	-	99	100.000	Heterocephalus_glaber_female
ENSCAPG00000006547	SF3B1	99	97.992	ENSHGLG00100005535	-	99	97.992	Heterocephalus_glaber_male
ENSCAPG00000006547	SF3B1	99	92.803	ENSHCOG00000016775	sf3b1	99	92.652	Hippocampus_comes
ENSCAPG00000006547	SF3B1	99	93.826	ENSIPUG00000013171	sf3b1	99	93.826	Ictalurus_punctatus
ENSCAPG00000006547	SF3B1	99	99.846	ENSSTOG00000011034	SF3B1	99	99.846	Ictidomys_tridecemlineatus
ENSCAPG00000006547	SF3B1	99	99.922	ENSJJAG00000010903	Sf3b1	99	99.922	Jaculus_jaculus
ENSCAPG00000006547	SF3B1	99	92.933	ENSKMAG00000004009	sf3b1	99	92.857	Kryptolebias_marmoratus
ENSCAPG00000006547	SF3B1	99	93.415	ENSLBEG00000022208	sf3b1	99	93.262	Labrus_bergylta
ENSCAPG00000006547	SF3B1	99	92.490	ENSLACG00000014832	SF3B1	99	92.490	Latimeria_chalumnae
ENSCAPG00000006547	SF3B1	99	94.749	ENSLOCG00000003899	sf3b1	99	94.597	Lepisosteus_oculatus
ENSCAPG00000006547	SF3B1	99	99.923	ENSLAFG00000001956	SF3B1	99	99.923	Loxodonta_africana
ENSCAPG00000006547	SF3B1	99	100.000	ENSMMUG00000022430	SF3B1	99	99.616	Macaca_mulatta
ENSCAPG00000006547	SF3B1	99	100.000	ENSMNEG00000042333	SF3B1	100	100.000	Macaca_nemestrina
ENSCAPG00000006547	SF3B1	95	93.478	ENSMLEG00000026141	SF3B1	99	94.027	Mandrillus_leucophaeus
ENSCAPG00000006547	SF3B1	99	93.445	ENSMAMG00000010241	sf3b1	99	93.445	Mastacembelus_armatus
ENSCAPG00000006547	SF3B1	99	92.683	ENSMZEG00005021254	sf3b1	99	92.530	Maylandia_zebra
ENSCAPG00000006547	SF3B1	99	98.766	ENSMGAG00000007017	SF3B1	99	98.766	Meleagris_gallopavo
ENSCAPG00000006547	SF3B1	99	95.753	ENSMAUG00000009071	Sf3b1	99	95.753	Mesocricetus_auratus
ENSCAPG00000006547	SF3B1	99	99.923	ENSMICG00000013879	SF3B1	99	99.923	Microcebus_murinus
ENSCAPG00000006547	SF3B1	99	95.598	ENSMOCG00000000455	Sf3b1	99	95.598	Microtus_ochrogaster
ENSCAPG00000006547	SF3B1	83	92.942	ENSMMOG00000000475	sf3b1	99	92.942	Mola_mola
ENSCAPG00000006547	SF3B1	99	99.154	ENSMODG00000012275	SF3B1	99	99.154	Monodelphis_domestica
ENSCAPG00000006547	SF3B1	99	93.369	ENSMALG00000017211	sf3b1	99	93.369	Monopterus_albus
ENSCAPG00000006547	SF3B1	99	99.846	MGP_CAROLIEiJ_G0014141	Sf3b1	99	99.846	Mus_caroli
ENSCAPG00000006547	SF3B1	99	99.846	ENSMUSG00000025982	Sf3b1	99	99.846	Mus_musculus
ENSCAPG00000006547	SF3B1	99	99.846	MGP_SPRETEiJ_G0014947	Sf3b1	99	99.846	Mus_spretus
ENSCAPG00000006547	SF3B1	99	99.846	ENSMPUG00000007799	SF3B1	99	99.846	Mustela_putorius_furo
ENSCAPG00000006547	SF3B1	99	98.615	ENSMLUG00000000840	SF3B1	99	98.615	Myotis_lucifugus
ENSCAPG00000006547	SF3B1	99	100.000	ENSNGAG00000021884	-	99	100.000	Nannospalax_galili
ENSCAPG00000006547	SF3B1	99	88.923	ENSNBRG00000015816	sf3b1	99	88.923	Neolamprologus_brichardi
ENSCAPG00000006547	SF3B1	99	100.000	ENSNLEG00000006861	SF3B1	99	100.000	Nomascus_leucogenys
ENSCAPG00000006547	SF3B1	70	100.000	ENSMEUG00000015848	-	67	100.000	Notamacropus_eugenii
ENSCAPG00000006547	SF3B1	99	87.923	ENSOPRG00000008596	SF3B1	99	87.923	Ochotona_princeps
ENSCAPG00000006547	SF3B1	99	99.846	ENSODEG00000011153	-	99	99.846	Octodon_degus
ENSCAPG00000006547	SF3B1	99	92.683	ENSONIG00000013758	sf3b1	99	92.530	Oreochromis_niloticus
ENSCAPG00000006547	SF3B1	83	98.985	ENSOCUG00000012722	-	96	98.985	Oryctolagus_cuniculus
ENSCAPG00000006547	SF3B1	99	93.216	ENSORLG00000020219	sf3b1	99	93.216	Oryzias_latipes
ENSCAPG00000006547	SF3B1	99	93.216	ENSORLG00020001746	sf3b1	99	93.216	Oryzias_latipes_hni
ENSCAPG00000006547	SF3B1	63	90.670	ENSORLG00015001759	sf3b1	97	90.670	Oryzias_latipes_hsok
ENSCAPG00000006547	SF3B1	99	93.222	ENSOMEG00000019231	sf3b1	99	93.222	Oryzias_melastigma
ENSCAPG00000006547	SF3B1	99	99.769	ENSOARG00000015374	SF3B1	99	99.769	Ovis_aries
ENSCAPG00000006547	SF3B1	99	100.000	ENSPPAG00000035007	SF3B1	99	100.000	Pan_paniscus
ENSCAPG00000006547	SF3B1	99	99.846	ENSPPRG00000009090	SF3B1	99	99.846	Panthera_pardus
ENSCAPG00000006547	SF3B1	99	99.846	ENSPTIG00000021557	SF3B1	99	99.846	Panthera_tigris_altaica
ENSCAPG00000006547	SF3B1	99	91.455	ENSPTRG00000012771	SF3B1	99	91.455	Pan_troglodytes
ENSCAPG00000006547	SF3B1	99	99.846	ENSPANG00000013417	SF3B1	99	99.846	Papio_anubis
ENSCAPG00000006547	SF3B1	99	94.885	ENSPKIG00000000784	sf3b1	99	94.733	Paramormyrops_kingsleyae
ENSCAPG00000006547	SF3B1	99	97.917	ENSPSIG00000017222	SF3B1	99	97.917	Pelodiscus_sinensis
ENSCAPG00000006547	SF3B1	90	93.829	ENSPMGG00000004330	sf3b1	98	93.660	Periophthalmus_magnuspinnatus
ENSCAPG00000006547	SF3B1	99	100.000	ENSPEMG00000010699	Sf3b1	100	100.000	Peromyscus_maniculatus_bairdii
ENSCAPG00000006547	SF3B1	99	90.214	ENSPMAG00000001311	sf3b1	99	90.367	Petromyzon_marinus
ENSCAPG00000006547	SF3B1	99	99.077	ENSPCIG00000010642	SF3B1	99	99.077	Phascolarctos_cinereus
ENSCAPG00000006547	SF3B1	99	93.151	ENSPFOG00000000073	sf3b1	99	93.151	Poecilia_formosa
ENSCAPG00000006547	SF3B1	99	93.222	ENSPLAG00000002293	sf3b1	99	93.222	Poecilia_latipinna
ENSCAPG00000006547	SF3B1	99	93.222	ENSPMEG00000000446	sf3b1	97	93.222	Poecilia_mexicana
ENSCAPG00000006547	SF3B1	99	93.298	ENSPREG00000019652	sf3b1	99	93.298	Poecilia_reticulata
ENSCAPG00000006547	SF3B1	99	98.814	ENSPPYG00000013044	SF3B1	96	98.814	Pongo_abelii
ENSCAPG00000006547	SF3B1	99	99.692	ENSPCAG00000009292	SF3B1	99	99.692	Procavia_capensis
ENSCAPG00000006547	SF3B1	99	99.769	ENSPCOG00000024074	SF3B1	99	99.769	Propithecus_coquereli
ENSCAPG00000006547	SF3B1	99	99.846	ENSPVAG00000008302	SF3B1	99	99.846	Pteropus_vampyrus
ENSCAPG00000006547	SF3B1	99	92.683	ENSPNYG00000014939	sf3b1	99	92.530	Pundamilia_nyererei
ENSCAPG00000006547	SF3B1	99	93.826	ENSPNAG00000008288	sf3b1	99	93.826	Pygocentrus_nattereri
ENSCAPG00000006547	SF3B1	99	99.846	ENSRNOG00000013516	Sf3b1	99	99.846	Rattus_norvegicus
ENSCAPG00000006547	SF3B1	99	96.448	ENSRBIG00000026096	SF3B1	99	96.448	Rhinopithecus_bieti
ENSCAPG00000006547	SF3B1	99	100.000	ENSRROG00000031308	SF3B1	99	100.000	Rhinopithecus_roxellana
ENSCAPG00000006547	SF3B1	99	99.846	ENSSBOG00000020080	SF3B1	99	99.846	Saimiri_boliviensis_boliviensis
ENSCAPG00000006547	SF3B1	99	99.154	ENSSHAG00000017564	SF3B1	99	99.154	Sarcophilus_harrisii
ENSCAPG00000006547	SF3B1	99	94.440	ENSSFOG00015021535	sf3b1	99	94.593	Scleropages_formosus
ENSCAPG00000006547	SF3B1	99	92.781	ENSSMAG00000013977	sf3b1	98	92.629	Scophthalmus_maximus
ENSCAPG00000006547	SF3B1	99	93.216	ENSSDUG00000017422	sf3b1	99	93.216	Seriola_dumerili
ENSCAPG00000006547	SF3B1	99	93.140	ENSSLDG00000019495	sf3b1	99	93.140	Seriola_lalandi_dorsalis
ENSCAPG00000006547	SF3B1	76	100.000	ENSSARG00000007016	SF3B1	76	100.000	Sorex_araneus
ENSCAPG00000006547	SF3B1	99	98.923	ENSSPUG00000000410	SF3B1	99	98.923	Sphenodon_punctatus
ENSCAPG00000006547	SF3B1	99	93.521	ENSSPAG00000010451	sf3b1	98	93.521	Stegastes_partitus
ENSCAPG00000006547	SF3B1	91	99.409	ENSSSCG00000016075	SF3B1	100	100.000	Sus_scrofa
ENSCAPG00000006547	SF3B1	99	99.154	ENSTGUG00000010553	SF3B1	99	99.154	Taeniopygia_guttata
ENSCAPG00000006547	SF3B1	99	93.293	ENSTRUG00000015534	sf3b1	99	93.140	Takifugu_rubripes
ENSCAPG00000006547	SF3B1	87	99.793	ENSTBEG00000008714	SF3B1	92	99.793	Tupaia_belangeri
ENSCAPG00000006547	SF3B1	92	94.185	ENSTTRG00000003414	SF3B1	92	94.185	Tursiops_truncatus
ENSCAPG00000006547	SF3B1	94	95.688	ENSUAMG00000018506	SF3B1	99	99.190	Ursus_americanus
ENSCAPG00000006547	SF3B1	99	99.846	ENSUMAG00000020945	SF3B1	99	99.846	Ursus_maritimus
ENSCAPG00000006547	SF3B1	99	91.692	ENSVPAG00000005798	SF3B1	99	91.692	Vicugna_pacos
ENSCAPG00000006547	SF3B1	99	99.846	ENSVVUG00000025948	SF3B1	94	99.846	Vulpes_vulpes
ENSCAPG00000006547	SF3B1	99	96.467	ENSXETG00000013339	sf3b1	99	96.467	Xenopus_tropicalis
ENSCAPG00000006547	SF3B1	99	89.724	ENSXCOG00000018086	sf3b1	99	89.610	Xiphophorus_couchianus
ENSCAPG00000006547	SF3B1	99	93.222	ENSXMAG00000007369	sf3b1	99	93.519	Xiphophorus_maculatus