EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCAPG00000006980 (Gene tree)
Gene ID
-
Gene Symbol
LSM5
Alias
YER146W
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Cavia_aperea
Status
putative
Strand
Plus strand
Length
2925 bases
Position
chrAVPZ01000234.1:22863720-22866644
Accession
17162
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCAPP00000004435LSMPF01423.229.1e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCAPT00000008010LSM5-201228-ENSCAPP0000000443575 (aa)--
Gene Model
Click here to download ENSCAPG00000006980's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000006980's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCAPG00000006980LSM57735.000ENSCAPG00000006904-8935.000
ENSCAPG00000006980LSM57735.000ENSCAPG00000006739-6335.000
ENSCAPG00000006980LSM57735.000ENSCAPG00000001019-6335.000
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCAPG00000006980LSM510092.000ENSG00000106355LSM510090.323Homo_sapiens
ENSCAPG00000006980LSM58798.462ENSAPOG00000011743LSM510088.710Acanthochromis_polyacanthus
ENSCAPG00000006980LSM510090.667ENSAPOG00000020779LSM57698.462Acanthochromis_polyacanthus
ENSCAPG00000006980LSM510092.000ENSAMEG00000006700LSM58292.000Ailuropoda_melanoleuca
ENSCAPG00000006980LSM56082.222ENSACIG00000019185lsm58082.222Amphilophus_citrinellus
ENSCAPG00000006980LSM510090.667ENSAOCG00000001636lsm58290.667Amphiprion_ocellaris
ENSCAPG00000006980LSM58388.710ENSAPEG00000008201lsm510088.710Amphiprion_percula
ENSCAPG00000006980LSM510090.667ENSAPEG00000008151lsm58290.667Amphiprion_percula
ENSCAPG00000006980LSM58798.462ENSATEG00000020470lsm57682.222Anabas_testudineus
ENSCAPG00000006980LSM59791.781ENSAPLG00000008171LSM59991.781Anas_platyrhynchos
ENSCAPG00000006980LSM553100.000ENSACAG00000009530LSM567100.000Anolis_carolinensis
ENSCAPG00000006980LSM510092.000ENSANAG00000034409-8292.000Aotus_nancymaae
ENSCAPG00000006980LSM510088.000ENSANAG00000024192-7888.000Aotus_nancymaae
ENSCAPG00000006980LSM58783.077ENSANAG00000037758-8183.077Aotus_nancymaae
ENSCAPG00000006980LSM510090.667ENSACLG00000012891lsm58590.667Astatotilapia_calliptera
ENSCAPG00000006980LSM510075.641ENSAMXG00000035543lsm58375.641Astyanax_mexicanus
ENSCAPG00000006980LSM510092.000ENSBTAG00000002332LSM58292.000Bos_taurus
ENSCAPG00000006980LSM510068.000WBGene00003079lsm-58268.000Caenorhabditis_elegans
ENSCAPG00000006980LSM510081.333ENSCJAG00000005678-8381.333Callithrix_jacchus
ENSCAPG00000006980LSM510092.000ENSCJAG00000047379LSM55688.889Callithrix_jacchus
ENSCAPG00000006980LSM510090.667ENSCAFG00000019261-8290.667Canis_familiaris
ENSCAPG00000006980LSM510092.000ENSCAFG00020004946LSM58292.000Canis_lupus_dingo
ENSCAPG00000006980LSM510092.000ENSCHIG00000024539LSM58292.000Capra_hircus
ENSCAPG00000006980LSM57777.586ENSCHIG00000021428-7079.032Capra_hircus
ENSCAPG00000006980LSM510089.333ENSCHIG00000004079-8289.333Capra_hircus
ENSCAPG00000006980LSM510062.667ENSTSYG00000036637-7862.667Carlito_syrichta
ENSCAPG00000006980LSM510077.333ENSTSYG00000028728-8177.333Carlito_syrichta
ENSCAPG00000006980LSM59179.412ENSTSYG00000026530-7479.412Carlito_syrichta
ENSCAPG00000006980LSM510092.000ENSTSYG00000006449-8292.000Carlito_syrichta
ENSCAPG00000006980LSM510092.000ENSCPOG00000036386LSM58292.000Cavia_porcellus
ENSCAPG00000006980LSM510090.667ENSCCAG00000000821-8290.667Cebus_capucinus
ENSCAPG00000006980LSM59169.118ENSCCAG00000037334-8869.118Cebus_capucinus
ENSCAPG00000006980LSM510090.667ENSCCAG00000032123-8290.667Cebus_capucinus
ENSCAPG00000006980LSM510092.000ENSCCAG00000037808-8292.000Cebus_capucinus
ENSCAPG00000006980LSM58784.615ENSCCAG00000032792-8184.615Cebus_capucinus
ENSCAPG00000006980LSM510092.000ENSCATG00000040218LSM510090.323Cercocebus_atys
ENSCAPG00000006980LSM510078.667ENSCATG00000014790-6997.500Cercocebus_atys
ENSCAPG00000006980LSM510076.000ENSCLAG00000005062-7476.000Chinchilla_lanigera
ENSCAPG00000006980LSM510092.000ENSCLAG00000000202LSM58292.000Chinchilla_lanigera
ENSCAPG00000006980LSM579100.000ENSCHOG00000005335LSM578100.000Choloepus_hoffmanni
ENSCAPG00000006980LSM510092.000ENSCPBG00000013685LSM58292.000Chrysemys_picta_bellii
ENSCAPG00000006980LSM510081.333ENSCING00000020625-8481.333Ciona_intestinalis
ENSCAPG00000006980LSM510081.333ENSCSAVG00000001439-8581.333Ciona_savignyi
ENSCAPG00000006980LSM510092.000ENSCANG00000039909LSM510090.323Colobus_angolensis_palliatus
ENSCAPG00000006980LSM510092.000ENSCGRG00001015461Lsm58292.000Cricetulus_griseus_chok1gshd
ENSCAPG00000006980LSM510092.000ENSCGRG00000007677Lsm510092.000Cricetulus_griseus_crigri
ENSCAPG00000006980LSM56082.222ENSCSEG00000015286lsm57682.222Cynoglossus_semilaevis
ENSCAPG00000006980LSM510090.667ENSCVAG00000004262lsm58490.667Cyprinodon_variegatus
ENSCAPG00000006980LSM510090.667ENSDARG00000071573lsm510088.710Danio_rerio
ENSCAPG00000006980LSM58786.154ENSDNOG00000049495-7186.154Dasypus_novemcinctus
ENSCAPG00000006980LSM510092.000ENSDNOG00000034958LSM58292.000Dasypus_novemcinctus
ENSCAPG00000006980LSM510092.000ENSDORG00000009422Lsm58292.000Dipodomys_ordii
ENSCAPG00000006980LSM58787.692FBgn0035675CG66107187.692Drosophila_melanogaster
ENSCAPG00000006980LSM510072.000ENSETEG00000010651-8172.000Echinops_telfairi
ENSCAPG00000006980LSM58364.516ENSETEG00000000777-6965.079Echinops_telfairi
ENSCAPG00000006980LSM59972.973ENSETEG00000016074-9872.973Echinops_telfairi
ENSCAPG00000006980LSM510072.000ENSETEG00000001469-8072.000Echinops_telfairi
ENSCAPG00000006980LSM510092.000ENSETEG00000018068LSM58292.000Echinops_telfairi
ENSCAPG00000006980LSM510086.667ENSEBUG00000008540lsm58286.667Eptatretus_burgeri
ENSCAPG00000006980LSM510092.000ENSEASG00005003500LSM58292.000Equus_asinus_asinus
ENSCAPG00000006980LSM510074.667ENSECAG00000018445LSM58074.667Equus_caballus
ENSCAPG00000006980LSM57684.211ENSEEUG00000004102LSM59584.211Erinaceus_europaeus
ENSCAPG00000006980LSM510090.667ENSELUG00000007792lsm58290.667Esox_lucius
ENSCAPG00000006980LSM510092.000ENSFCAG00000000230LSM58292.000Felis_catus
ENSCAPG00000006980LSM510092.000ENSFALG00000001892LSM59092.000Ficedula_albicollis
ENSCAPG00000006980LSM510092.000ENSFDAG00000008767LSM58292.000Fukomys_damarensis
ENSCAPG00000006980LSM510065.333ENSFDAG00000008685-8865.333Fukomys_damarensis
ENSCAPG00000006980LSM510078.667ENSFHEG00000004011lsm58178.667Fundulus_heteroclitus
ENSCAPG00000006980LSM59990.541ENSGMOG00000018235lsm58290.541Gadus_morhua
ENSCAPG00000006980LSM510092.000ENSGALG00000041625LSM58292.000Gallus_gallus
ENSCAPG00000006980LSM58388.710ENSGAFG00000016824lsm510088.710Gambusia_affinis
ENSCAPG00000006980LSM510090.667ENSGACG00000005528lsm58290.667Gasterosteus_aculeatus
ENSCAPG00000006980LSM510092.000ENSGAGG00000015593LSM58292.000Gopherus_agassizii
ENSCAPG00000006980LSM510092.000ENSGGOG00000043469LSM58292.000Gorilla_gorilla
ENSCAPG00000006980LSM510090.667ENSHBUG00000013773lsm58590.667Haplochromis_burtoni
ENSCAPG00000006980LSM510092.000ENSHGLG00000011765LSM58292.000Heterocephalus_glaber_female
ENSCAPG00000006980LSM510092.000ENSHGLG00100015610LSM58492.000Heterocephalus_glaber_male
ENSCAPG00000006980LSM56080.000ENSHCOG00000008288lsm57680.000Hippocampus_comes
ENSCAPG00000006980LSM510090.667ENSIPUG00000021095LSM58290.667Ictalurus_punctatus
ENSCAPG00000006980LSM510092.000ENSSTOG00000012662LSM58292.000Ictidomys_tridecemlineatus
ENSCAPG00000006980LSM510080.000ENSSTOG00000033886-8480.000Ictidomys_tridecemlineatus
ENSCAPG00000006980LSM58493.651ENSJJAG00000004475-8093.651Jaculus_jaculus
ENSCAPG00000006980LSM510092.000ENSJJAG00000012145-8292.000Jaculus_jaculus
ENSCAPG00000006980LSM56982.692ENSJJAG00000016144-6282.692Jaculus_jaculus
ENSCAPG00000006980LSM510089.333ENSKMAG00000021861lsm58289.333Kryptolebias_marmoratus
ENSCAPG00000006980LSM58798.462ENSLBEG00000009235LSM55198.462Labrus_bergylta
ENSCAPG00000006980LSM55380.000ENSLBEG00000017379lsm56680.000Labrus_bergylta
ENSCAPG00000006980LSM510089.333ENSLACG00000022448LSM58289.333Latimeria_chalumnae
ENSCAPG00000006980LSM510090.667ENSLOCG00000012903lsm58290.667Lepisosteus_oculatus
ENSCAPG00000006980LSM510065.333ENSLAFG00000027938-8065.333Loxodonta_africana
ENSCAPG00000006980LSM510092.000ENSLAFG00000029579LSM58292.000Loxodonta_africana
ENSCAPG00000006980LSM510089.333ENSMFAG00000030152-8289.333Macaca_fascicularis
ENSCAPG00000006980LSM510092.000ENSMFAG00000038508LSM58292.000Macaca_fascicularis
ENSCAPG00000006980LSM510089.333ENSMMUG00000030131-8289.333Macaca_mulatta
ENSCAPG00000006980LSM510080.000ENSMMUG00000039822-8280.000Macaca_mulatta
ENSCAPG00000006980LSM510089.333ENSMNEG00000037935-8289.333Macaca_nemestrina
ENSCAPG00000006980LSM510092.000ENSMNEG00000015331LSM510090.323Macaca_nemestrina
ENSCAPG00000006980LSM510092.000ENSMLEG00000024945LSM58292.000Mandrillus_leucophaeus
ENSCAPG00000006980LSM510078.667ENSMLEG00000034037-8378.667Mandrillus_leucophaeus
ENSCAPG00000006980LSM510086.667ENSMAMG00000012869lsm58286.667Mastacembelus_armatus
ENSCAPG00000006980LSM510090.667ENSMZEG00005019554lsm58590.667Maylandia_zebra
ENSCAPG00000006980LSM510092.000ENSMGAG00000012117LSM58292.000Meleagris_gallopavo
ENSCAPG00000006980LSM510092.000ENSMAUG00000008132-8292.000Mesocricetus_auratus
ENSCAPG00000006980LSM510092.000ENSMAUG00000012222Lsm58292.000Mesocricetus_auratus
ENSCAPG00000006980LSM58780.000ENSMICG00000033928-8480.000Microcebus_murinus
ENSCAPG00000006980LSM510092.000ENSMICG00000005353LSM58292.000Microcebus_murinus
ENSCAPG00000006980LSM510092.000ENSMOCG00000012018Lsm58292.000Microtus_ochrogaster
ENSCAPG00000006980LSM510090.667ENSMMOG00000004026lsm58690.667Mola_mola
ENSCAPG00000006980LSM58390.323ENSMODG00000013274-10090.323Monodelphis_domestica
ENSCAPG00000006980LSM58383.871ENSMALG00000010343lsm510083.871Monopterus_albus
ENSCAPG00000006980LSM510092.000MGP_CAROLIEiJ_G0028421Lsm58292.000Mus_caroli
ENSCAPG00000006980LSM510092.000ENSMUSG00000091625Lsm58292.000Mus_musculus
ENSCAPG00000006980LSM510092.000MGP_PahariEiJ_G0022171Lsm58292.000Mus_pahari
ENSCAPG00000006980LSM510092.000MGP_SPRETEiJ_G0029423Lsm58292.000Mus_spretus
ENSCAPG00000006980LSM510092.000ENSMLUG00000017028LSM58292.000Myotis_lucifugus
ENSCAPG00000006980LSM510079.221ENSNGAG00000017707-8279.221Nannospalax_galili
ENSCAPG00000006980LSM510069.333ENSNGAG00000022569-7869.333Nannospalax_galili
ENSCAPG00000006980LSM510092.000ENSNGAG00000024142Lsm58292.000Nannospalax_galili
ENSCAPG00000006980LSM57687.719ENSNBRG00000011386lsm57687.719Neolamprologus_brichardi
ENSCAPG00000006980LSM510092.000ENSNLEG00000015268LSM58292.000Nomascus_leucogenys
ENSCAPG00000006980LSM510092.000ENSOPRG00000002443LSM510092.000Ochotona_princeps
ENSCAPG00000006980LSM510092.000ENSODEG00000019072-8292.000Octodon_degus
ENSCAPG00000006980LSM510092.000ENSODEG00000008258-8292.000Octodon_degus
ENSCAPG00000006980LSM58758.462ENSOANG00000014540-8758.462Ornithorhynchus_anatinus
ENSCAPG00000006980LSM510092.000ENSOCUG00000029043LSM58292.000Oryctolagus_cuniculus
ENSCAPG00000006980LSM510089.333ENSORLG00020003019lsm57889.333Oryzias_latipes_hni
ENSCAPG00000006980LSM510089.333ENSORLG00015003338lsm58289.333Oryzias_latipes_hsok
ENSCAPG00000006980LSM510089.333ENSOMEG00000001078lsm58289.333Oryzias_melastigma
ENSCAPG00000006980LSM510092.000ENSOGAG00000013892LSM58292.000Otolemur_garnettii
ENSCAPG00000006980LSM510092.000ENSOARG00000006944LSM58292.000Ovis_aries
ENSCAPG00000006980LSM510092.000ENSPPAG00000003697-8292.000Pan_paniscus
ENSCAPG00000006980LSM510092.000ENSPPRG00000002550LSM58292.000Panthera_pardus
ENSCAPG00000006980LSM510092.000ENSPTIG00000015604LSM58292.000Panthera_tigris_altaica
ENSCAPG00000006980LSM510072.000ENSPTRG00000049488-8274.667Pan_troglodytes
ENSCAPG00000006980LSM510092.000ENSPTRG00000019057LSM58292.000Pan_troglodytes
ENSCAPG00000006980LSM510089.333ENSPANG00000033477-8289.333Papio_anubis
ENSCAPG00000006980LSM510092.000ENSPANG00000032179-8292.000Papio_anubis
ENSCAPG00000006980LSM510080.000ENSPANG00000032538-8280.000Papio_anubis
ENSCAPG00000006980LSM510090.667ENSPKIG00000011910lsm58290.667Paramormyrops_kingsleyae
ENSCAPG00000006980LSM59791.781ENSPSIG00000014796LSM59991.781Pelodiscus_sinensis
ENSCAPG00000006980LSM58388.710ENSPMGG00000011699lsm510088.710Periophthalmus_magnuspinnatus
ENSCAPG00000006980LSM510068.000ENSPEMG00000022375-8068.000Peromyscus_maniculatus_bairdii
ENSCAPG00000006980LSM510090.667ENSPFOG00000001433lsm58290.667Poecilia_formosa
ENSCAPG00000006980LSM510090.667ENSPLAG00000009665lsm58290.667Poecilia_latipinna
ENSCAPG00000006980LSM510090.667ENSPMEG00000022265lsm58290.667Poecilia_mexicana
ENSCAPG00000006980LSM58388.710ENSPREG00000022452lsm510088.710Poecilia_reticulata
ENSCAPG00000006980LSM510088.000ENSPPYG00000017661LSM58288.000Pongo_abelii
ENSCAPG00000006980LSM587100.000ENSPCAG00000013740LSM580100.000Procavia_capensis
ENSCAPG00000006980LSM510092.000ENSPVAG00000009786LSM58292.000Pteropus_vampyrus
ENSCAPG00000006980LSM510090.667ENSPNYG00000022236lsm58590.667Pundamilia_nyererei
ENSCAPG00000006980LSM510090.667ENSPNAG00000001887lsm58290.667Pygocentrus_nattereri
ENSCAPG00000006980LSM510092.000ENSRNOG00000042126Lsm58292.000Rattus_norvegicus
ENSCAPG00000006980LSM510089.474ENSRNOG00000027305AABR07065089.18389.474Rattus_norvegicus
ENSCAPG00000006980LSM510092.000ENSRBIG00000030340-8292.000Rhinopithecus_bieti
ENSCAPG00000006980LSM510092.000ENSRBIG00000030714-8292.000Rhinopithecus_bieti
ENSCAPG00000006980LSM510090.667ENSRBIG00000024431-8290.667Rhinopithecus_bieti
ENSCAPG00000006980LSM510092.000ENSRBIG00000027803-10090.323Rhinopithecus_bieti
ENSCAPG00000006980LSM510092.000ENSRROG00000004655-8292.000Rhinopithecus_roxellana
ENSCAPG00000006980LSM510092.000ENSRROG00000042782-10090.323Rhinopithecus_roxellana
ENSCAPG00000006980LSM510092.000ENSRROG00000023884-8292.000Rhinopithecus_roxellana
ENSCAPG00000006980LSM58747.143YER146W-7547.143Saccharomyces_cerevisiae
ENSCAPG00000006980LSM510092.000ENSSBOG00000012312LSM58292.000Saimiri_boliviensis_boliviensis
ENSCAPG00000006980LSM58780.000ENSSBOG00000034794-8180.000Saimiri_boliviensis_boliviensis
ENSCAPG00000006980LSM510090.667ENSSBOG00000019124-8290.667Saimiri_boliviensis_boliviensis
ENSCAPG00000006980LSM510090.667ENSSFOG00015010099lsm58290.667Scleropages_formosus
ENSCAPG00000006980LSM56082.222ENSSMAG00000007895lsm57682.222Scophthalmus_maximus
ENSCAPG00000006980LSM58388.710ENSSDUG00000010762lsm510088.710Seriola_dumerili
ENSCAPG00000006980LSM58778.462ENSSLDG00000008014-7778.462Seriola_lalandi_dorsalis
ENSCAPG00000006980LSM510090.667ENSSLDG00000025242lsm58290.667Seriola_lalandi_dorsalis
ENSCAPG00000006980LSM510090.667ENSSPUG00000002690LSM510088.710Sphenodon_punctatus
ENSCAPG00000006980LSM56082.222ENSSPAG00000005435lsm57682.222Stegastes_partitus
ENSCAPG00000006980LSM510092.000ENSSSCG00000026064-8292.000Sus_scrofa
ENSCAPG00000006980LSM56890.196ENSSSCG00000029661-7488.679Sus_scrofa
ENSCAPG00000006980LSM510092.000ENSTGUG00000017539LSM58292.000Taeniopygia_guttata
ENSCAPG00000006980LSM58788.571ENSTRUG00000017749lsm55488.571Takifugu_rubripes
ENSCAPG00000006980LSM510089.333ENSTNIG00000008695lsm58589.333Tetraodon_nigroviridis
ENSCAPG00000006980LSM510092.000ENSTBEG00000004876LSM58292.000Tupaia_belangeri
ENSCAPG00000006980LSM510092.000ENSTTRG00000004237LSM58292.000Tursiops_truncatus
ENSCAPG00000006980LSM59991.892ENSUMAG00000002625LSM55391.892Ursus_maritimus
ENSCAPG00000006980LSM510092.000ENSVPAG00000009985LSM58292.000Vicugna_pacos
ENSCAPG00000006980LSM510092.000ENSVVUG00000021311LSM58292.000Vulpes_vulpes
ENSCAPG00000006980LSM587100.000ENSXETG00000026465lsm579100.000Xenopus_tropicalis
ENSCAPG00000006980LSM58388.710ENSXCOG00000015348lsm510088.710Xiphophorus_couchianus
ENSCAPG00000006980LSM510090.667ENSXMAG00000029988lsm58290.667Xiphophorus_maculatus

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