EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCAPG00000008426 (Gene tree)
Gene ID: -
Gene Symbol: RBM47
Alias: FLJ20273|NET18
Full Name: RNA binding motif protein 47
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Minus strand
Length: 9906 bases
Position: chrAVPZ01000167.1:14672329-14682234
Accession: 30358
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000006244	RRM_1	PF00076.22	5.8e-33	1	3
ENSCAPP00000006244	RRM_1	PF00076.22	5.8e-33	2	3
ENSCAPP00000006244	RRM_1	PF00076.22	5.8e-33	3	3
ENSCAPP00000006243	RRM_1	PF00076.22	9.7e-33	1	3
ENSCAPP00000006243	RRM_1	PF00076.22	9.7e-33	2	3
ENSCAPP00000006243	RRM_1	PF00076.22	9.7e-33	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000009913	RBM47-202	1569	-	ENSCAPP00000006244	522 (aa)	-	-
ENSCAPT00000009912	RBM47-201	1776	-	ENSCAPP00000006243	591 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000008426's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000008426's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCAPG00000008426	RBM47	69	48.815	ENSCAPG00000017386	A1CF	53	70.833

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000008426	RBM47	100	87.563	ENSG00000163694	RBM47	96	92.164	Homo_sapiens
ENSCAPG00000008426	RBM47	100	72.529	ENSAPOG00000011062	rbm47	100	72.697	Acanthochromis_polyacanthus
ENSCAPG00000008426	RBM47	100	87.437	ENSAMEG00000009672	RBM47	100	87.437	Ailuropoda_melanoleuca
ENSCAPG00000008426	RBM47	100	71.933	ENSACIG00000011531	rbm47	100	71.765	Amphilophus_citrinellus
ENSCAPG00000008426	RBM47	100	72.605	ENSAOCG00000022245	rbm47	100	73.109	Amphiprion_ocellaris
ENSCAPG00000008426	RBM47	100	72.269	ENSAPEG00000018304	rbm47	100	72.773	Amphiprion_percula
ENSCAPG00000008426	RBM47	100	71.757	ENSATEG00000018400	rbm47	100	71.429	Anabas_testudineus
ENSCAPG00000008426	RBM47	100	80.808	ENSAPLG00000013974	RBM47	100	80.640	Anas_platyrhynchos
ENSCAPG00000008426	RBM47	100	79.299	ENSACAG00000011833	RBM47	100	79.633	Anolis_carolinensis
ENSCAPG00000008426	RBM47	100	87.731	ENSANAG00000029440	RBM47	100	87.395	Aotus_nancymaae
ENSCAPG00000008426	RBM47	100	73.834	ENSACLG00000016902	rbm47	100	73.834	Astatotilapia_calliptera
ENSCAPG00000008426	RBM47	100	69.444	ENSAMXG00000021794	rbm47	100	72.751	Astyanax_mexicanus
ENSCAPG00000008426	RBM47	100	88.027	ENSBTAG00000002356	RBM47	100	88.870	Bos_taurus
ENSCAPG00000008426	RBM47	100	87.416	ENSCJAG00000019385	RBM47	100	86.993	Callithrix_jacchus
ENSCAPG00000008426	RBM47	89	91.825	ENSCAFG00000015898	RBM47	100	86.532	Canis_familiaris
ENSCAPG00000008426	RBM47	75	93.722	ENSCAFG00020010558	RBM47	94	94.118	Canis_lupus_dingo
ENSCAPG00000008426	RBM47	100	88.364	ENSCHIG00000026214	RBM47	100	89.039	Capra_hircus
ENSCAPG00000008426	RBM47	78	86.301	ENSTSYG00000033612	RBM47	95	84.018	Carlito_syrichta
ENSCAPG00000008426	RBM47	100	100.000	ENSCPOG00000014100	RBM47	100	100.000	Cavia_porcellus
ENSCAPG00000008426	RBM47	99	60.774	ENSCCAG00000024397	-	99	60.269	Cebus_capucinus
ENSCAPG00000008426	RBM47	100	87.752	ENSCCAG00000030129	-	100	87.331	Cebus_capucinus
ENSCAPG00000008426	RBM47	100	87.731	ENSCATG00000042064	RBM47	100	87.731	Cercocebus_atys
ENSCAPG00000008426	RBM47	100	96.622	ENSCLAG00000001684	RBM47	100	95.946	Chinchilla_lanigera
ENSCAPG00000008426	RBM47	100	87.731	ENSCSAG00000017060	RBM47	100	87.731	Chlorocebus_sabaeus
ENSCAPG00000008426	RBM47	88	87.500	ENSCHOG00000011731	RBM47	88	85.000	Choloepus_hoffmanni
ENSCAPG00000008426	RBM47	100	82.580	ENSCPBG00000013831	RBM47	100	82.580	Chrysemys_picta_bellii
ENSCAPG00000008426	RBM47	100	88.235	ENSCANG00000019997	RBM47	100	87.731	Colobus_angolensis_palliatus
ENSCAPG00000008426	RBM47	100	80.571	ENSCGRG00001020102	-	100	81.698	Cricetulus_griseus_chok1gshd
ENSCAPG00000008426	RBM47	100	86.184	ENSCGRG00001000623	-	100	84.757	Cricetulus_griseus_chok1gshd
ENSCAPG00000008426	RBM47	100	86.184	ENSCGRG00000007762	-	100	83.920	Cricetulus_griseus_crigri
ENSCAPG00000008426	RBM47	100	80.190	ENSCGRG00000014760	-	100	81.167	Cricetulus_griseus_crigri
ENSCAPG00000008426	RBM47	100	70.687	ENSCSEG00000004545	rbm47	100	70.854	Cynoglossus_semilaevis
ENSCAPG00000008426	RBM47	96	77.054	ENSCVAG00000020144	rbm47	100	72.308	Cyprinodon_variegatus
ENSCAPG00000008426	RBM47	100	71.475	ENSDARG00000061985	rbm47	100	71.148	Danio_rerio
ENSCAPG00000008426	RBM47	100	85.497	ENSDNOG00000046854	RBM47	100	86.509	Dasypus_novemcinctus
ENSCAPG00000008426	RBM47	100	87.625	ENSDORG00000010144	Rbm47	100	86.957	Dipodomys_ordii
ENSCAPG00000008426	RBM47	100	87.102	ENSETEG00000009194	RBM47	100	86.767	Echinops_telfairi
ENSCAPG00000008426	RBM47	90	57.798	ENSEBUG00000011912	rbm47	90	57.798	Eptatretus_burgeri
ENSCAPG00000008426	RBM47	100	88.196	ENSEASG00005008443	RBM47	100	88.870	Equus_asinus_asinus
ENSCAPG00000008426	RBM47	100	88.196	ENSECAG00000004400	RBM47	100	88.870	Equus_caballus
ENSCAPG00000008426	RBM47	75	87.500	ENSEEUG00000001194	RBM47	75	87.037	Erinaceus_europaeus
ENSCAPG00000008426	RBM47	100	73.096	ENSELUG00000006148	rbm47	100	72.980	Esox_lucius
ENSCAPG00000008426	RBM47	100	89.696	ENSFCAG00000012399	RBM47	100	89.020	Felis_catus
ENSCAPG00000008426	RBM47	100	82.718	ENSFALG00000002861	RBM47	100	82.550	Ficedula_albicollis
ENSCAPG00000008426	RBM47	100	91.216	ENSFDAG00000016326	RBM47	100	90.541	Fukomys_damarensis
ENSCAPG00000008426	RBM47	100	71.261	ENSFHEG00000007938	rbm47	100	71.092	Fundulus_heteroclitus
ENSCAPG00000008426	RBM47	100	73.096	ENSGMOG00000014802	rbm47	100	68.943	Gadus_morhua
ENSCAPG00000008426	RBM47	72	81.117	ENSGALG00000014267	RBM47	99	81.117	Gallus_gallus
ENSCAPG00000008426	RBM47	72	74.332	ENSGAFG00000020571	rbm47	98	74.332	Gambusia_affinis
ENSCAPG00000008426	RBM47	100	69.885	ENSGACG00000016223	rbm47	100	72.051	Gasterosteus_aculeatus
ENSCAPG00000008426	RBM47	100	82.747	ENSGAGG00000020051	RBM47	100	82.747	Gopherus_agassizii
ENSCAPG00000008426	RBM47	100	87.731	ENSGGOG00000001367	RBM47	100	87.731	Gorilla_gorilla
ENSCAPG00000008426	RBM47	100	73.834	ENSHBUG00000003520	rbm47	100	73.834	Haplochromis_burtoni
ENSCAPG00000008426	RBM47	84	90.400	ENSHGLG00000016914	RBM47	98	92.000	Heterocephalus_glaber_female
ENSCAPG00000008426	RBM47	100	78.547	ENSHGLG00100003071	-	100	78.378	Heterocephalus_glaber_male
ENSCAPG00000008426	RBM47	100	91.216	ENSHGLG00100014028	-	100	93.243	Heterocephalus_glaber_male
ENSCAPG00000008426	RBM47	99	71.644	ENSHCOG00000002074	rbm47	99	72.564	Hippocampus_comes
ENSCAPG00000008426	RBM47	100	72.280	ENSIPUG00000004743	rbm47	100	73.529	Ictalurus_punctatus
ENSCAPG00000008426	RBM47	100	92.715	ENSSTOG00000004727	RBM47	100	91.391	Ictidomys_tridecemlineatus
ENSCAPG00000008426	RBM47	100	88.079	ENSJJAG00000013823	Rbm47	100	86.432	Jaculus_jaculus
ENSCAPG00000008426	RBM47	100	73.289	ENSKMAG00000000084	rbm47	100	73.289	Kryptolebias_marmoratus
ENSCAPG00000008426	RBM47	100	71.026	ENSLBEG00000008436	rbm47	100	71.026	Labrus_bergylta
ENSCAPG00000008426	RBM47	100	78.824	ENSLACG00000007196	RBM47	100	78.319	Latimeria_chalumnae
ENSCAPG00000008426	RBM47	100	75.421	ENSLOCG00000012966	rbm47	95	74.916	Lepisosteus_oculatus
ENSCAPG00000008426	RBM47	100	90.728	ENSLAFG00000011998	RBM47	100	86.555	Loxodonta_africana
ENSCAPG00000008426	RBM47	100	87.731	ENSMFAG00000037967	RBM47	100	87.731	Macaca_fascicularis
ENSCAPG00000008426	RBM47	100	87.731	ENSMMUG00000012036	RBM47	100	87.731	Macaca_mulatta
ENSCAPG00000008426	RBM47	100	87.899	ENSMNEG00000040774	RBM47	100	87.731	Macaca_nemestrina
ENSCAPG00000008426	RBM47	100	85.397	ENSMLEG00000041432	RBM47	100	85.397	Mandrillus_leucophaeus
ENSCAPG00000008426	RBM47	100	70.888	ENSMAMG00000019143	rbm47	100	73.522	Mastacembelus_armatus
ENSCAPG00000008426	RBM47	100	73.834	ENSMZEG00005023659	rbm47	100	71.429	Maylandia_zebra
ENSCAPG00000008426	RBM47	100	82.441	ENSMGAG00000012226	RBM47	100	82.274	Meleagris_gallopavo
ENSCAPG00000008426	RBM47	100	85.906	ENSMAUG00000006493	Rbm47	100	85.570	Mesocricetus_auratus
ENSCAPG00000008426	RBM47	100	82.939	ENSMICG00000026417	RBM47	100	83.784	Microcebus_murinus
ENSCAPG00000008426	RBM47	100	86.218	ENSMOCG00000021170	Rbm47	100	85.882	Microtus_ochrogaster
ENSCAPG00000008426	RBM47	100	70.936	ENSMMOG00000007260	rbm47	100	72.494	Mola_mola
ENSCAPG00000008426	RBM47	100	75.169	ENSMODG00000020561	-	100	74.155	Monodelphis_domestica
ENSCAPG00000008426	RBM47	100	84.564	ENSMODG00000007003	RBM47	100	82.799	Monodelphis_domestica
ENSCAPG00000008426	RBM47	60	71.609	ENSMODG00000015426	-	99	71.609	Monodelphis_domestica
ENSCAPG00000008426	RBM47	100	71.906	ENSMALG00000005167	rbm47	100	73.196	Monopterus_albus
ENSCAPG00000008426	RBM47	100	86.577	MGP_CAROLIEiJ_G0027258	Rbm47	100	86.027	Mus_caroli
ENSCAPG00000008426	RBM47	100	87.248	ENSMUSG00000070780	Rbm47	100	86.195	Mus_musculus
ENSCAPG00000008426	RBM47	100	87.248	MGP_PahariEiJ_G0017040	Rbm47	100	86.195	Mus_pahari
ENSCAPG00000008426	RBM47	100	86.341	MGP_SPRETEiJ_G0028253	Rbm47	100	86.172	Mus_spretus
ENSCAPG00000008426	RBM47	100	88.889	ENSMPUG00000006177	RBM47	94	88.721	Mustela_putorius_furo
ENSCAPG00000008426	RBM47	100	86.364	ENSMLUG00000000889	RBM47	100	85.859	Myotis_lucifugus
ENSCAPG00000008426	RBM47	100	86.242	ENSNGAG00000003325	Rbm47	100	86.074	Nannospalax_galili
ENSCAPG00000008426	RBM47	100	73.834	ENSNBRG00000015092	rbm47	100	71.311	Neolamprologus_brichardi
ENSCAPG00000008426	RBM47	100	87.395	ENSNLEG00000017151	RBM47	100	87.395	Nomascus_leucogenys
ENSCAPG00000008426	RBM47	69	81.944	ENSMEUG00000009516	-	100	77.622	Notamacropus_eugenii
ENSCAPG00000008426	RBM47	74	91.701	ENSOPRG00000016507	-	71	91.701	Ochotona_princeps
ENSCAPG00000008426	RBM47	100	95.946	ENSODEG00000004873	RBM47	100	90.709	Octodon_degus
ENSCAPG00000008426	RBM47	100	72.494	ENSONIG00000009061	rbm47	100	70.164	Oreochromis_niloticus
ENSCAPG00000008426	RBM47	100	79.466	ENSOANG00000008978	RBM47	100	79.967	Ornithorhynchus_anatinus
ENSCAPG00000008426	RBM47	100	91.892	ENSOCUG00000012034	RBM47	100	88.364	Oryctolagus_cuniculus
ENSCAPG00000008426	RBM47	100	73.454	ENSORLG00000005847	rbm47	100	73.454	Oryzias_latipes
ENSCAPG00000008426	RBM47	100	73.454	ENSORLG00020005154	rbm47	100	73.454	Oryzias_latipes_hni
ENSCAPG00000008426	RBM47	100	75.733	ENSORLG00015000066	rbm47	100	73.454	Oryzias_latipes_hsok
ENSCAPG00000008426	RBM47	100	75.401	ENSOMEG00000010730	rbm47	100	72.437	Oryzias_melastigma
ENSCAPG00000008426	RBM47	100	88.384	ENSOGAG00000029367	-	100	88.215	Otolemur_garnettii
ENSCAPG00000008426	RBM47	100	79.899	ENSOGAG00000025193	-	100	79.899	Otolemur_garnettii
ENSCAPG00000008426	RBM47	100	79.595	ENSOARG00000012711	RBM47	100	80.270	Ovis_aries
ENSCAPG00000008426	RBM47	100	87.563	ENSPPAG00000029763	RBM47	100	87.563	Pan_paniscus
ENSCAPG00000008426	RBM47	100	87.162	ENSPPRG00000012873	RBM47	100	87.162	Panthera_pardus
ENSCAPG00000008426	RBM47	85	90.060	ENSPTIG00000017046	RBM47	100	89.662	Panthera_tigris_altaica
ENSCAPG00000008426	RBM47	100	87.731	ENSPTRG00000016006	RBM47	100	87.731	Pan_troglodytes
ENSCAPG00000008426	RBM47	100	87.731	ENSPANG00000005980	RBM47	100	87.731	Papio_anubis
ENSCAPG00000008426	RBM47	100	69.759	ENSPKIG00000013431	RBM47	98	74.286	Paramormyrops_kingsleyae
ENSCAPG00000008426	RBM47	96	76.487	ENSPKIG00000005037	rbm47	100	73.057	Paramormyrops_kingsleyae
ENSCAPG00000008426	RBM47	89	83.365	ENSPSIG00000017516	RBM47	97	83.176	Pelodiscus_sinensis
ENSCAPG00000008426	RBM47	100	71.429	ENSPMGG00000018540	rbm47	100	71.597	Periophthalmus_magnuspinnatus
ENSCAPG00000008426	RBM47	100	86.242	ENSPEMG00000011088	Rbm47	100	86.074	Peromyscus_maniculatus_bairdii
ENSCAPG00000008426	RBM47	100	71.537	ENSPFOG00000007997	rbm47	100	70.799	Poecilia_formosa
ENSCAPG00000008426	RBM47	100	71.285	ENSPLAG00000002072	rbm47	100	74.064	Poecilia_latipinna
ENSCAPG00000008426	RBM47	100	74.332	ENSPMEG00000017492	rbm47	100	72.362	Poecilia_mexicana
ENSCAPG00000008426	RBM47	100	72.564	ENSPREG00000008456	rbm47	100	74.332	Poecilia_reticulata
ENSCAPG00000008426	RBM47	98	74.703	ENSPPYG00000014688	RBM47	100	75.382	Pongo_abelii
ENSCAPG00000008426	RBM47	88	88.889	ENSPCAG00000011879	RBM47	81	86.500	Procavia_capensis
ENSCAPG00000008426	RBM47	100	85.642	ENSPCOG00000023451	RBM47	100	85.473	Propithecus_coquereli
ENSCAPG00000008426	RBM47	100	86.387	ENSPVAG00000003812	RBM47	100	87.227	Pteropus_vampyrus
ENSCAPG00000008426	RBM47	100	73.834	ENSPNYG00000022868	rbm47	100	71.242	Pundamilia_nyererei
ENSCAPG00000008426	RBM47	100	70.000	ENSPNAG00000007940	rbm47	100	73.008	Pygocentrus_nattereri
ENSCAPG00000008426	RBM47	100	86.577	ENSRNOG00000002408	Rbm47	100	86.364	Rattus_norvegicus
ENSCAPG00000008426	RBM47	100	88.403	ENSRBIG00000039601	RBM47	100	87.899	Rhinopithecus_bieti
ENSCAPG00000008426	RBM47	100	88.403	ENSRROG00000044696	RBM47	100	87.899	Rhinopithecus_roxellana
ENSCAPG00000008426	RBM47	100	84.122	ENSSBOG00000028475	RBM47	100	87.397	Saimiri_boliviensis_boliviensis
ENSCAPG00000008426	RBM47	100	85.135	ENSSHAG00000017576	RBM47	100	83.784	Sarcophilus_harrisii
ENSCAPG00000008426	RBM47	100	69.347	ENSSFOG00015024101	RBM47	100	68.342	Scleropages_formosus
ENSCAPG00000008426	RBM47	100	67.769	ENSSFOG00015012445	rbm47	100	71.182	Scleropages_formosus
ENSCAPG00000008426	RBM47	100	70.000	ENSSMAG00000009744	rbm47	100	72.680	Scophthalmus_maximus
ENSCAPG00000008426	RBM47	100	72.437	ENSSDUG00000022684	rbm47	100	72.437	Seriola_dumerili
ENSCAPG00000008426	RBM47	100	72.437	ENSSLDG00000003109	rbm47	100	72.437	Seriola_lalandi_dorsalis
ENSCAPG00000008426	RBM47	85	87.719	ENSSARG00000001735	RBM47	84	87.054	Sorex_araneus
ENSCAPG00000008426	RBM47	100	80.336	ENSSPUG00000007515	RBM47	100	80.000	Sphenodon_punctatus
ENSCAPG00000008426	RBM47	100	72.773	ENSSPAG00000001257	rbm47	100	73.077	Stegastes_partitus
ENSCAPG00000008426	RBM47	100	88.196	ENSSSCG00000008796	RBM47	100	88.364	Sus_scrofa
ENSCAPG00000008426	RBM47	100	82.689	ENSTGUG00000008705	RBM47	100	82.689	Taeniopygia_guttata
ENSCAPG00000008426	RBM47	100	70.420	ENSTRUG00000014050	rbm47	100	70.588	Takifugu_rubripes
ENSCAPG00000008426	RBM47	100	70.395	ENSTNIG00000006127	rbm47	100	70.559	Tetraodon_nigroviridis
ENSCAPG00000008426	RBM47	87	88.750	ENSTBEG00000001607	RBM47	76	83.467	Tupaia_belangeri
ENSCAPG00000008426	RBM47	100	87.521	ENSTTRG00000002839	RBM47	100	87.858	Tursiops_truncatus
ENSCAPG00000008426	RBM47	100	89.226	ENSUAMG00000021346	RBM47	100	88.215	Ursus_americanus
ENSCAPG00000008426	RBM47	57	92.632	ENSVPAG00000000641	-	57	90.526	Vicugna_pacos
ENSCAPG00000008426	RBM47	89	92.000	ENSVVUG00000014774	RBM47	100	86.195	Vulpes_vulpes
ENSCAPG00000008426	RBM47	100	79.328	ENSXETG00000012802	rbm47	100	78.319	Xenopus_tropicalis
ENSCAPG00000008426	RBM47	100	70.476	ENSXCOG00000000780	rbm47	100	74.332	Xiphophorus_couchianus
ENSCAPG00000008426	RBM47	100	74.332	ENSXMAG00000009874	rbm47	100	72.308	Xiphophorus_maculatus