EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCAPG00000009057 (Gene tree)
Gene ID: -
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Minus strand
Length: 9902 bases
Position: chrAVPZ01000145.1:24147821-24157722
Accession: 25792
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000007010	HVSL	PF09749.9	7e-45	1	2
ENSCAPP00000007010	HVSL	PF09749.9	7e-45	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000010696	USB1-201	585	-	ENSCAPP00000007010	194 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000009057's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000009057's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000009057	USB1	100	72.430	ENSG00000103005	USB1	100	70.093	Homo_sapiens
ENSCAPG00000009057	USB1	96	45.631	ENSAPOG00000011942	usb1	78	45.631	Acanthochromis_polyacanthus
ENSCAPG00000009057	USB1	100	70.690	ENSAMEG00000017205	USB1	86	70.690	Ailuropoda_melanoleuca
ENSCAPG00000009057	USB1	96	43.750	ENSACIG00000012234	usb1	82	43.750	Amphilophus_citrinellus
ENSCAPG00000009057	USB1	96	44.196	ENSAOCG00000014831	usb1	79	44.196	Amphiprion_ocellaris
ENSCAPG00000009057	USB1	96	44.643	ENSAPEG00000000296	usb1	79	44.643	Amphiprion_percula
ENSCAPG00000009057	USB1	97	43.172	ENSATEG00000009348	usb1	79	43.750	Anabas_testudineus
ENSCAPG00000009057	USB1	96	55.752	ENSAPLG00000002756	USB1	100	56.195	Anas_platyrhynchos
ENSCAPG00000009057	USB1	96	51.770	ENSACAG00000015481	USB1	99	51.770	Anolis_carolinensis
ENSCAPG00000009057	USB1	100	70.561	ENSANAG00000035640	USB1	74	83.761	Aotus_nancymaae
ENSCAPG00000009057	USB1	96	43.750	ENSACLG00000020586	usb1	79	43.750	Astatotilapia_calliptera
ENSCAPG00000009057	USB1	99	41.558	ENSAMXG00000040146	usb1	75	41.558	Astyanax_mexicanus
ENSCAPG00000009057	USB1	100	71.983	ENSBTAG00000015758	USB1	88	71.983	Bos_taurus
ENSCAPG00000009057	USB1	100	71.983	ENSCJAG00000011733	USB1	74	88.034	Callithrix_jacchus
ENSCAPG00000009057	USB1	99	70.000	ENSCAFG00000008556	USB1	61	70.000	Canis_familiaris
ENSCAPG00000009057	USB1	99	69.697	ENSCAFG00020009263	USB1	87	69.697	Canis_lupus_dingo
ENSCAPG00000009057	USB1	100	69.828	ENSCHIG00000024290	USB1	88	69.828	Capra_hircus
ENSCAPG00000009057	USB1	100	71.028	ENSTSYG00000006997	USB1	88	70.259	Carlito_syrichta
ENSCAPG00000009057	USB1	100	84.348	ENSCPOG00000014325	USB1	86	84.348	Cavia_porcellus
ENSCAPG00000009057	USB1	100	72.430	ENSCCAG00000022132	USB1	79	80.800	Cebus_capucinus
ENSCAPG00000009057	USB1	100	73.364	ENSCATG00000032174	USB1	75	86.441	Cercocebus_atys
ENSCAPG00000009057	USB1	72	75.000	ENSCLAG00000007363	USB1	100	75.000	Chinchilla_lanigera
ENSCAPG00000009057	USB1	100	71.983	ENSCSAG00000004783	USB1	88	71.983	Chlorocebus_sabaeus
ENSCAPG00000009057	USB1	100	55.172	ENSCPBG00000026943	USB1	83	55.411	Chrysemys_picta_bellii
ENSCAPG00000009057	USB1	100	72.897	ENSCANG00000037135	USB1	74	86.607	Colobus_angolensis_palliatus
ENSCAPG00000009057	USB1	100	69.828	ENSCGRG00001011243	USB1	87	69.828	Cricetulus_griseus_chok1gshd
ENSCAPG00000009057	USB1	100	69.828	ENSCGRG00000013252	USB1	87	69.828	Cricetulus_griseus_crigri
ENSCAPG00000009057	USB1	99	40.260	ENSCSEG00000013881	usb1	83	40.260	Cynoglossus_semilaevis
ENSCAPG00000009057	USB1	96	40.351	ENSCVAG00000009252	usb1	97	40.789	Cyprinodon_variegatus
ENSCAPG00000009057	USB1	99	40.260	ENSDARG00000003841	usb1	84	40.260	Danio_rerio
ENSCAPG00000009057	USB1	99	67.965	ENSDORG00000001888	Usb1	87	67.965	Dipodomys_ordii
ENSCAPG00000009057	USB1	87	36.667	FBgn0037713	CG16790	78	36.667	Drosophila_melanogaster
ENSCAPG00000009057	USB1	100	56.466	ENSETEG00000019682	USB1	87	56.466	Echinops_telfairi
ENSCAPG00000009057	USB1	99	39.655	ENSEBUG00000005889	usb1	81	39.655	Eptatretus_burgeri
ENSCAPG00000009057	USB1	100	71.983	ENSEASG00005005484	USB1	88	71.983	Equus_asinus_asinus
ENSCAPG00000009057	USB1	100	71.552	ENSECAG00000019493	USB1	80	71.552	Equus_caballus
ENSCAPG00000009057	USB1	72	61.932	ENSEEUG00000000154	USB1	66	61.932	Erinaceus_europaeus
ENSCAPG00000009057	USB1	96	40.444	ENSELUG00000010974	usb1	82	40.444	Esox_lucius
ENSCAPG00000009057	USB1	100	72.897	ENSFCAG00000002693	USB1	86	72.897	Felis_catus
ENSCAPG00000009057	USB1	99	50.870	ENSFALG00000006876	USB1	86	50.870	Ficedula_albicollis
ENSCAPG00000009057	USB1	99	78.788	ENSFDAG00000010052	USB1	87	78.788	Fukomys_damarensis
ENSCAPG00000009057	USB1	78	41.885	ENSFHEG00000012334	usb1	76	42.932	Fundulus_heteroclitus
ENSCAPG00000009057	USB1	95	40.991	ENSGMOG00000004228	usb1	99	40.991	Gadus_morhua
ENSCAPG00000009057	USB1	95	55.804	ENSGALG00000035604	USB1	89	55.263	Gallus_gallus
ENSCAPG00000009057	USB1	96	42.667	ENSGAFG00000021890	usb1	81	42.667	Gambusia_affinis
ENSCAPG00000009057	USB1	99	41.126	ENSGACG00000003257	usb1	83	41.126	Gasterosteus_aculeatus
ENSCAPG00000009057	USB1	100	54.310	ENSGAGG00000022572	USB1	85	54.310	Gopherus_agassizii
ENSCAPG00000009057	USB1	100	72.897	ENSGGOG00000017147	USB1	87	72.897	Gorilla_gorilla
ENSCAPG00000009057	USB1	96	44.196	ENSHBUG00000009823	usb1	80	44.196	Haplochromis_burtoni
ENSCAPG00000009057	USB1	100	75.431	ENSHGLG00000016078	USB1	85	75.431	Heterocephalus_glaber_female
ENSCAPG00000009057	USB1	100	75.431	ENSHGLG00100005562	USB1	85	75.431	Heterocephalus_glaber_male
ENSCAPG00000009057	USB1	92	43.519	ENSHCOG00000015633	usb1	86	43.498	Hippocampus_comes
ENSCAPG00000009057	USB1	96	42.857	ENSIPUG00000008601	usb1	78	42.857	Ictalurus_punctatus
ENSCAPG00000009057	USB1	100	72.414	ENSSTOG00000007548	USB1	85	72.414	Ictidomys_tridecemlineatus
ENSCAPG00000009057	USB1	100	72.727	ENSJJAG00000021859	Usb1	87	72.727	Jaculus_jaculus
ENSCAPG00000009057	USB1	96	43.304	ENSKMAG00000007200	usb1	79	43.304	Kryptolebias_marmoratus
ENSCAPG00000009057	USB1	85	42.365	ENSLBEG00000008452	usb1	65	42.784	Labrus_bergylta
ENSCAPG00000009057	USB1	96	45.852	ENSLACG00000000105	USB1	73	48.341	Latimeria_chalumnae
ENSCAPG00000009057	USB1	96	45.982	ENSLOCG00000000465	usb1	79	45.982	Lepisosteus_oculatus
ENSCAPG00000009057	USB1	100	51.282	ENSLAFG00000002267	USB1	86	51.709	Loxodonta_africana
ENSCAPG00000009057	USB1	100	73.364	ENSMFAG00000003926	USB1	75	86.441	Macaca_fascicularis
ENSCAPG00000009057	USB1	100	73.364	ENSMMUG00000022669	USB1	73	87.500	Macaca_mulatta
ENSCAPG00000009057	USB1	100	72.897	ENSMNEG00000042487	USB1	75	86.441	Macaca_nemestrina
ENSCAPG00000009057	USB1	100	73.364	ENSMLEG00000028756	USB1	75	86.441	Mandrillus_leucophaeus
ENSCAPG00000009057	USB1	100	41.810	ENSMAMG00000015092	usb1	83	41.810	Mastacembelus_armatus
ENSCAPG00000009057	USB1	96	43.750	ENSMZEG00005010008	usb1	80	43.750	Maylandia_zebra
ENSCAPG00000009057	USB1	100	69.397	ENSMAUG00000007832	Usb1	87	69.397	Mesocricetus_auratus
ENSCAPG00000009057	USB1	99	72.300	ENSMICG00000004900	USB1	75	84.746	Microcebus_murinus
ENSCAPG00000009057	USB1	100	66.379	ENSMOCG00000022647	Usb1	87	66.379	Microtus_ochrogaster
ENSCAPG00000009057	USB1	98	41.485	ENSMMOG00000000490	usb1	89	41.485	Mola_mola
ENSCAPG00000009057	USB1	93	58.716	ENSMODG00000014067	USB1	84	58.482	Monodelphis_domestica
ENSCAPG00000009057	USB1	96	43.750	ENSMALG00000005930	usb1	79	43.750	Monopterus_albus
ENSCAPG00000009057	USB1	100	68.966	MGP_CAROLIEiJ_G0031421	Usb1	100	79.646	Mus_caroli
ENSCAPG00000009057	USB1	100	68.534	ENSMUSG00000031792	Usb1	100	78.761	Mus_musculus
ENSCAPG00000009057	USB1	100	69.397	MGP_PahariEiJ_G0023019	Usb1	99	81.897	Mus_pahari
ENSCAPG00000009057	USB1	100	67.241	MGP_SPRETEiJ_G0032540	Usb1	87	67.241	Mus_spretus
ENSCAPG00000009057	USB1	99	67.965	ENSMPUG00000004684	USB1	83	67.965	Mustela_putorius_furo
ENSCAPG00000009057	USB1	99	72.294	ENSMLUG00000007400	USB1	100	72.294	Myotis_lucifugus
ENSCAPG00000009057	USB1	100	69.828	ENSNGAG00000009703	Usb1	86	69.828	Nannospalax_galili
ENSCAPG00000009057	USB1	99	46.829	ENSNBRG00000008747	usb1	99	43.458	Neolamprologus_brichardi
ENSCAPG00000009057	USB1	92	70.352	ENSNLEG00000003340	USB1	74	85.470	Nomascus_leucogenys
ENSCAPG00000009057	USB1	59	64.655	ENSMEUG00000003328	-	71	68.519	Notamacropus_eugenii
ENSCAPG00000009057	USB1	86	91.176	ENSOPRG00000011803	USB1	72	91.176	Ochotona_princeps
ENSCAPG00000009057	USB1	100	77.826	ENSODEG00000016214	USB1	87	77.826	Octodon_degus
ENSCAPG00000009057	USB1	96	43.750	ENSONIG00000011063	usb1	80	43.750	Oreochromis_niloticus
ENSCAPG00000009057	USB1	96	60.000	ENSOANG00000012118	USB1	94	60.000	Ornithorhynchus_anatinus
ENSCAPG00000009057	USB1	99	40.693	ENSORLG00000012479	usb1	85	40.693	Oryzias_latipes
ENSCAPG00000009057	USB1	99	40.693	ENSORLG00020018671	usb1	85	40.693	Oryzias_latipes_hni
ENSCAPG00000009057	USB1	99	40.693	ENSORLG00015009679	usb1	85	40.693	Oryzias_latipes_hsok
ENSCAPG00000009057	USB1	98	40.789	ENSOMEG00000012930	usb1	82	40.789	Oryzias_melastigma
ENSCAPG00000009057	USB1	100	72.897	ENSOGAG00000003273	USB1	87	72.897	Otolemur_garnettii
ENSCAPG00000009057	USB1	100	70.690	ENSOARG00000001107	USB1	89	70.690	Ovis_aries
ENSCAPG00000009057	USB1	100	72.897	ENSPPAG00000042137	USB1	87	72.897	Pan_paniscus
ENSCAPG00000009057	USB1	100	71.963	ENSPPRG00000024797	USB1	86	71.963	Panthera_pardus
ENSCAPG00000009057	USB1	100	71.495	ENSPTIG00000007506	USB1	86	71.495	Panthera_tigris_altaica
ENSCAPG00000009057	USB1	100	72.897	ENSPTRG00000008172	USB1	100	71.028	Pan_troglodytes
ENSCAPG00000009057	USB1	100	73.364	ENSPANG00000025138	USB1	75	86.441	Papio_anubis
ENSCAPG00000009057	USB1	95	42.986	ENSPKIG00000015109	usb1	75	42.986	Paramormyrops_kingsleyae
ENSCAPG00000009057	USB1	96	43.243	ENSPSIG00000004305	USB1	100	43.243	Pelodiscus_sinensis
ENSCAPG00000009057	USB1	95	43.498	ENSPMGG00000017725	usb1	85	43.498	Periophthalmus_magnuspinnatus
ENSCAPG00000009057	USB1	100	69.397	ENSPEMG00000016183	Usb1	85	69.397	Peromyscus_maniculatus_bairdii
ENSCAPG00000009057	USB1	100	41.453	ENSPMAG00000000462	usb1	99	41.453	Petromyzon_marinus
ENSCAPG00000009057	USB1	96	42.222	ENSPFOG00000011130	usb1	81	42.222	Poecilia_formosa
ENSCAPG00000009057	USB1	96	42.222	ENSPLAG00000009820	usb1	81	42.222	Poecilia_latipinna
ENSCAPG00000009057	USB1	96	42.222	ENSPMEG00000006402	usb1	81	42.222	Poecilia_mexicana
ENSCAPG00000009057	USB1	78	42.408	ENSPREG00000001047	usb1	77	42.932	Poecilia_reticulata
ENSCAPG00000009057	USB1	93	65.753	ENSPPYG00000007401	USB1	87	65.753	Pongo_abelii
ENSCAPG00000009057	USB1	100	72.897	ENSPCOG00000022612	USB1	75	85.593	Propithecus_coquereli
ENSCAPG00000009057	USB1	97	68.584	ENSPVAG00000004613	USB1	87	68.584	Pteropus_vampyrus
ENSCAPG00000009057	USB1	96	46.117	ENSPNYG00000022262	usb1	80	44.196	Pundamilia_nyererei
ENSCAPG00000009057	USB1	96	42.857	ENSPNAG00000011736	usb1	76	42.857	Pygocentrus_nattereri
ENSCAPG00000009057	USB1	100	69.397	ENSRNOG00000013216	Usb1	87	69.397	Rattus_norvegicus
ENSCAPG00000009057	USB1	100	73.364	ENSRBIG00000044466	USB1	100	71.495	Rhinopithecus_bieti
ENSCAPG00000009057	USB1	100	73.364	ENSRROG00000029211	USB1	75	86.441	Rhinopithecus_roxellana
ENSCAPG00000009057	USB1	100	72.430	ENSSBOG00000029362	USB1	74	86.325	Saimiri_boliviensis_boliviensis
ENSCAPG00000009057	USB1	93	59.817	ENSSHAG00000006993	USB1	89	59.821	Sarcophilus_harrisii
ENSCAPG00000009057	USB1	99	46.320	ENSSFOG00015023663	usb1	73	46.320	Scleropages_formosus
ENSCAPG00000009057	USB1	99	41.224	ENSSMAG00000015834	usb1	83	41.224	Scophthalmus_maximus
ENSCAPG00000009057	USB1	96	44.643	ENSSDUG00000002949	usb1	83	44.643	Seriola_dumerili
ENSCAPG00000009057	USB1	97	44.053	ENSSLDG00000014174	usb1	81	44.053	Seriola_lalandi_dorsalis
ENSCAPG00000009057	USB1	91	54.673	ENSSPUG00000006741	USB1	100	54.673	Sphenodon_punctatus
ENSCAPG00000009057	USB1	96	42.411	ENSSPAG00000007484	usb1	79	42.411	Stegastes_partitus
ENSCAPG00000009057	USB1	100	71.983	ENSSSCG00000002807	USB1	86	71.983	Sus_scrofa
ENSCAPG00000009057	USB1	90	55.238	ENSTGUG00000004792	USB1	82	55.238	Taeniopygia_guttata
ENSCAPG00000009057	USB1	99	38.961	ENSTRUG00000021069	usb1	86	38.961	Takifugu_rubripes
ENSCAPG00000009057	USB1	96	37.946	ENSTNIG00000000626	usb1	83	37.946	Tetraodon_nigroviridis
ENSCAPG00000009057	USB1	100	57.328	ENSTBEG00000001507	USB1	100	57.328	Tupaia_belangeri
ENSCAPG00000009057	USB1	100	69.397	ENSUAMG00000016823	USB1	86	69.397	Ursus_americanus
ENSCAPG00000009057	USB1	91	70.093	ENSUMAG00000021369	USB1	100	70.093	Ursus_maritimus
ENSCAPG00000009057	USB1	99	70.000	ENSVVUG00000023700	USB1	89	69.697	Vulpes_vulpes
ENSCAPG00000009057	USB1	92	47.248	ENSXETG00000013795	usb1	89	47.085	Xenopus_tropicalis
ENSCAPG00000009057	USB1	96	42.667	ENSXMAG00000024687	usb1	66	42.667	Xiphophorus_maculatus