EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCAPG00000009132 (Gene tree)
Gene ID: -
Gene Symbol: SMNDC1
Alias: SMNR|SPF30|TDRD16C
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Cavia_aperea
Status: putative
Strand: Plus strand
Length: 9322 bases
Position: chrAVPZ01000023.1:5134867-5144188
Accession: 16900
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCAPP00000007130	SMN	PF06003.12	1.5e-16	1	1
ENSCAPP00000007136	SMN	PF06003.12	3.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCAPT00000010818	SMNDC1-201	603	-	ENSCAPP00000007130	201 (aa)	-	-
ENSCAPT00000010824	SMNDC1-202	705	-	ENSCAPP00000007136	234 (aa)	-	-

Gene Model

Click here to download ENSCAPG00000009132's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCAPG00000009132's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCAPG00000009132	SMNDC1	100	98.507	ENSG00000119953	SMNDC1	100	83.750	Homo_sapiens
ENSCAPG00000009132	SMNDC1	100	72.772	ENSAPOG00000021772	smndc1	100	61.250	Acanthochromis_polyacanthus
ENSCAPG00000009132	SMNDC1	100	99.005	ENSAMEG00000005251	SMNDC1	100	84.167	Ailuropoda_melanoleuca
ENSCAPG00000009132	SMNDC1	100	73.762	ENSACIG00000004819	smndc1	100	63.485	Amphilophus_citrinellus
ENSCAPG00000009132	SMNDC1	100	72.772	ENSAOCG00000017869	smndc1	100	61.250	Amphiprion_ocellaris
ENSCAPG00000009132	SMNDC1	100	72.772	ENSAPEG00000007752	smndc1	100	61.250	Amphiprion_percula
ENSCAPG00000009132	SMNDC1	100	72.637	ENSATEG00000006830	smndc1	100	62.500	Anabas_testudineus
ENSCAPG00000009132	SMNDC1	80	94.410	ENSAPLG00000004322	SMNDC1	81	94.410	Anas_platyrhynchos
ENSCAPG00000009132	SMNDC1	100	94.030	ENSACAG00000005983	SMNDC1	84	94.030	Anolis_carolinensis
ENSCAPG00000009132	SMNDC1	100	99.005	ENSANAG00000032875	SMNDC1	100	84.167	Aotus_nancymaae
ENSCAPG00000009132	SMNDC1	100	72.637	ENSACLG00000016360	smndc1	91	72.637	Astatotilapia_calliptera
ENSCAPG00000009132	SMNDC1	100	72.637	ENSAMXG00000020310	smndc1	84	72.637	Astyanax_mexicanus
ENSCAPG00000009132	SMNDC1	100	98.507	ENSBTAG00000000551	SMNDC1	100	83.750	Bos_taurus
ENSCAPG00000009132	SMNDC1	100	99.005	ENSCJAG00000018624	SMNDC1	100	84.167	Callithrix_jacchus
ENSCAPG00000009132	SMNDC1	100	99.005	ENSCAFG00000010720	SMNDC1	100	84.167	Canis_familiaris
ENSCAPG00000009132	SMNDC1	100	99.005	ENSCAFG00020011913	SMNDC1	100	84.167	Canis_lupus_dingo
ENSCAPG00000009132	SMNDC1	100	98.507	ENSCHIG00000010604	SMNDC1	100	83.750	Capra_hircus
ENSCAPG00000009132	SMNDC1	100	98.507	ENSTSYG00000026454	SMNDC1	100	83.750	Carlito_syrichta
ENSCAPG00000009132	SMNDC1	100	100.000	ENSCPOG00000031666	SMNDC1	100	85.000	Cavia_porcellus
ENSCAPG00000009132	SMNDC1	100	99.005	ENSCCAG00000021793	SMNDC1	100	84.167	Cebus_capucinus
ENSCAPG00000009132	SMNDC1	100	99.005	ENSCATG00000035910	SMNDC1	84	99.005	Cercocebus_atys
ENSCAPG00000009132	SMNDC1	100	99.502	ENSCLAG00000002838	SMNDC1	100	84.583	Chinchilla_lanigera
ENSCAPG00000009132	SMNDC1	100	99.005	ENSCSAG00000005169	SMNDC1	100	84.167	Chlorocebus_sabaeus
ENSCAPG00000009132	SMNDC1	96	98.446	ENSCHOG00000002936	SMNDC1	100	98.446	Choloepus_hoffmanni
ENSCAPG00000009132	SMNDC1	100	96.517	ENSCPBG00000012837	SMNDC1	84	96.517	Chrysemys_picta_bellii
ENSCAPG00000009132	SMNDC1	100	91.045	ENSCANG00000034620	-	100	77.917	Colobus_angolensis_palliatus
ENSCAPG00000009132	SMNDC1	99	82.500	ENSCANG00000036994	-	89	82.500	Colobus_angolensis_palliatus
ENSCAPG00000009132	SMNDC1	100	99.005	ENSCANG00000031720	-	100	84.167	Colobus_angolensis_palliatus
ENSCAPG00000009132	SMNDC1	100	98.010	ENSCGRG00001012973	Smndc1	84	98.010	Cricetulus_griseus_chok1gshd
ENSCAPG00000009132	SMNDC1	100	98.010	ENSCGRG00000012396	Smndc1	84	98.010	Cricetulus_griseus_crigri
ENSCAPG00000009132	SMNDC1	100	72.139	ENSCSEG00000015621	smndc1	99	65.315	Cynoglossus_semilaevis
ENSCAPG00000009132	SMNDC1	100	73.134	ENSCVAG00000020432	smndc1	100	62.917	Cyprinodon_variegatus
ENSCAPG00000009132	SMNDC1	100	76.617	ENSDARG00000056235	smndc1	100	65.833	Danio_rerio
ENSCAPG00000009132	SMNDC1	100	99.005	ENSDNOG00000016387	SMNDC1	70	99.005	Dasypus_novemcinctus
ENSCAPG00000009132	SMNDC1	100	99.005	ENSDORG00000023715	Smndc1	100	84.167	Dipodomys_ordii
ENSCAPG00000009132	SMNDC1	98	40.000	FBgn0039977	CG17454	86	41.364	Drosophila_melanogaster
ENSCAPG00000009132	SMNDC1	100	68.137	ENSEBUG00000010929	smndc1	85	68.137	Eptatretus_burgeri
ENSCAPG00000009132	SMNDC1	100	99.005	ENSEASG00005014930	SMNDC1	100	84.167	Equus_asinus_asinus
ENSCAPG00000009132	SMNDC1	100	99.005	ENSECAG00000029973	SMNDC1	100	84.167	Equus_caballus
ENSCAPG00000009132	SMNDC1	80	62.733	ENSEEUG00000013407	-	81	62.733	Erinaceus_europaeus
ENSCAPG00000009132	SMNDC1	100	74.129	ENSELUG00000000227	smndc1	100	63.750	Esox_lucius
ENSCAPG00000009132	SMNDC1	100	99.005	ENSFCAG00000027353	SMNDC1	100	84.167	Felis_catus
ENSCAPG00000009132	SMNDC1	100	94.527	ENSFALG00000002306	SMNDC1	84	94.527	Ficedula_albicollis
ENSCAPG00000009132	SMNDC1	100	99.502	ENSFDAG00000006468	SMNDC1	100	84.583	Fukomys_damarensis
ENSCAPG00000009132	SMNDC1	100	72.637	ENSFHEG00000020150	smndc1	100	62.500	Fundulus_heteroclitus
ENSCAPG00000009132	SMNDC1	100	74.129	ENSGMOG00000016585	smndc1	84	74.129	Gadus_morhua
ENSCAPG00000009132	SMNDC1	100	94.527	ENSGALG00000008561	SMNDC1	84	94.527	Gallus_gallus
ENSCAPG00000009132	SMNDC1	100	71.642	ENSGAFG00000011582	smndc1	100	61.667	Gambusia_affinis
ENSCAPG00000009132	SMNDC1	100	72.139	ENSGACG00000009468	smndc1	100	62.083	Gasterosteus_aculeatus
ENSCAPG00000009132	SMNDC1	100	96.517	ENSGAGG00000024547	SMNDC1	84	96.517	Gopherus_agassizii
ENSCAPG00000009132	SMNDC1	100	99.005	ENSGGOG00000010071	SMNDC1	100	84.167	Gorilla_gorilla
ENSCAPG00000009132	SMNDC1	100	72.637	ENSHBUG00000017596	smndc1	84	72.637	Haplochromis_burtoni
ENSCAPG00000009132	SMNDC1	100	64.734	ENSHGLG00000001157	-	82	60.577	Heterocephalus_glaber_female
ENSCAPG00000009132	SMNDC1	100	99.502	ENSHGLG00000013390	-	100	84.583	Heterocephalus_glaber_female
ENSCAPG00000009132	SMNDC1	100	75.362	ENSHGLG00100004278	-	83	75.362	Heterocephalus_glaber_male
ENSCAPG00000009132	SMNDC1	100	99.502	ENSHGLG00100004814	-	100	84.583	Heterocephalus_glaber_male
ENSCAPG00000009132	SMNDC1	100	71.782	ENSHCOG00000000783	smndc1	100	61.826	Hippocampus_comes
ENSCAPG00000009132	SMNDC1	100	74.129	ENSIPUG00000004217	smndc1	100	63.750	Ictalurus_punctatus
ENSCAPG00000009132	SMNDC1	100	98.507	ENSSTOG00000006088	SMNDC1	100	83.750	Ictidomys_tridecemlineatus
ENSCAPG00000009132	SMNDC1	100	99.005	ENSJJAG00000019974	Smndc1	100	84.167	Jaculus_jaculus
ENSCAPG00000009132	SMNDC1	100	71.642	ENSKMAG00000020134	smndc1	100	61.667	Kryptolebias_marmoratus
ENSCAPG00000009132	SMNDC1	100	71.144	ENSLBEG00000004598	smndc1	100	61.250	Labrus_bergylta
ENSCAPG00000009132	SMNDC1	100	80.597	ENSLACG00000007784	SMNDC1	84	80.597	Latimeria_chalumnae
ENSCAPG00000009132	SMNDC1	100	82.090	ENSLOCG00000012355	smndc1	100	70.417	Lepisosteus_oculatus
ENSCAPG00000009132	SMNDC1	100	98.507	ENSLAFG00000014353	SMNDC1	100	83.750	Loxodonta_africana
ENSCAPG00000009132	SMNDC1	100	99.005	ENSMFAG00000002433	-	100	84.167	Macaca_fascicularis
ENSCAPG00000009132	SMNDC1	100	79.602	ENSMFAG00000038381	-	82	79.602	Macaca_fascicularis
ENSCAPG00000009132	SMNDC1	100	79.602	ENSMMUG00000045875	-	82	79.602	Macaca_mulatta
ENSCAPG00000009132	SMNDC1	100	99.005	ENSMMUG00000007775	SMNDC1	100	84.167	Macaca_mulatta
ENSCAPG00000009132	SMNDC1	100	99.005	ENSMNEG00000042963	-	100	84.167	Macaca_nemestrina
ENSCAPG00000009132	SMNDC1	100	85.572	ENSMNEG00000033853	-	83	85.572	Macaca_nemestrina
ENSCAPG00000009132	SMNDC1	100	91.584	ENSMLEG00000040236	SMNDC1	84	91.089	Mandrillus_leucophaeus
ENSCAPG00000009132	SMNDC1	100	74.129	ENSMAMG00000018233	smndc1	82	74.129	Mastacembelus_armatus
ENSCAPG00000009132	SMNDC1	100	72.637	ENSMZEG00005027510	smndc1	84	72.637	Maylandia_zebra
ENSCAPG00000009132	SMNDC1	81	93.865	ENSMGAG00000010777	SMNDC1	69	93.865	Meleagris_gallopavo
ENSCAPG00000009132	SMNDC1	100	99.005	ENSMAUG00000012243	-	100	84.167	Mesocricetus_auratus
ENSCAPG00000009132	SMNDC1	100	79.602	ENSMAUG00000005459	-	76	81.771	Mesocricetus_auratus
ENSCAPG00000009132	SMNDC1	100	85.572	ENSMICG00000031640	-	84	85.572	Microcebus_murinus
ENSCAPG00000009132	SMNDC1	100	99.005	ENSMICG00000027336	-	100	84.167	Microcebus_murinus
ENSCAPG00000009132	SMNDC1	100	98.507	ENSMOCG00000002458	Smndc1	100	83.750	Microtus_ochrogaster
ENSCAPG00000009132	SMNDC1	100	72.637	ENSMMOG00000008856	smndc1	100	62.500	Mola_mola
ENSCAPG00000009132	SMNDC1	100	98.010	ENSMODG00000010542	SMNDC1	84	98.010	Monodelphis_domestica
ENSCAPG00000009132	SMNDC1	100	73.134	ENSMALG00000017598	smndc1	100	62.917	Monopterus_albus
ENSCAPG00000009132	SMNDC1	100	98.507	MGP_CAROLIEiJ_G0023072	Smndc1	100	83.750	Mus_caroli
ENSCAPG00000009132	SMNDC1	100	98.010	ENSMUSG00000025024	Smndc1	84	98.010	Mus_musculus
ENSCAPG00000009132	SMNDC1	100	97.512	MGP_PahariEiJ_G0014560	Smndc1	84	97.512	Mus_pahari
ENSCAPG00000009132	SMNDC1	100	98.010	MGP_SPRETEiJ_G0023993	Smndc1	84	98.010	Mus_spretus
ENSCAPG00000009132	SMNDC1	100	99.005	ENSMPUG00000002089	SMNDC1	100	84.167	Mustela_putorius_furo
ENSCAPG00000009132	SMNDC1	100	98.507	ENSMLUG00000016007	SMNDC1	100	83.750	Myotis_lucifugus
ENSCAPG00000009132	SMNDC1	100	98.010	ENSNGAG00000006833	Smndc1	84	98.010	Nannospalax_galili
ENSCAPG00000009132	SMNDC1	100	72.139	ENSNBRG00000017089	smndc1	84	72.139	Neolamprologus_brichardi
ENSCAPG00000009132	SMNDC1	100	99.005	ENSNLEG00000015471	SMNDC1	100	84.167	Nomascus_leucogenys
ENSCAPG00000009132	SMNDC1	79	53.374	ENSMEUG00000010120	-	80	53.988	Notamacropus_eugenii
ENSCAPG00000009132	SMNDC1	100	100.000	ENSOPRG00000015348	SMNDC1	100	85.000	Ochotona_princeps
ENSCAPG00000009132	SMNDC1	100	65.174	ENSODEG00000007594	-	81	61.692	Octodon_degus
ENSCAPG00000009132	SMNDC1	100	72.139	ENSONIG00000000434	smndc1	84	72.139	Oreochromis_niloticus
ENSCAPG00000009132	SMNDC1	100	97.512	ENSOANG00000001598	SMNDC1	84	97.512	Ornithorhynchus_anatinus
ENSCAPG00000009132	SMNDC1	100	73.134	ENSOCUG00000012274	-	83	75.124	Oryctolagus_cuniculus
ENSCAPG00000009132	SMNDC1	100	99.005	ENSOCUG00000008145	-	100	84.167	Oryctolagus_cuniculus
ENSCAPG00000009132	SMNDC1	100	72.637	ENSORLG00000005934	smndc1	95	62.500	Oryzias_latipes
ENSCAPG00000009132	SMNDC1	100	72.637	ENSORLG00020008796	smndc1	95	62.500	Oryzias_latipes_hni
ENSCAPG00000009132	SMNDC1	100	72.637	ENSORLG00015013666	smndc1	100	62.500	Oryzias_latipes_hsok
ENSCAPG00000009132	SMNDC1	100	74.627	ENSOMEG00000007590	smndc1	100	64.167	Oryzias_melastigma
ENSCAPG00000009132	SMNDC1	100	98.507	ENSOGAG00000000571	SMNDC1	100	83.750	Otolemur_garnettii
ENSCAPG00000009132	SMNDC1	100	98.507	ENSOARG00000009500	SMNDC1	100	83.750	Ovis_aries
ENSCAPG00000009132	SMNDC1	100	99.005	ENSPPAG00000027815	SMNDC1	100	84.167	Pan_paniscus
ENSCAPG00000009132	SMNDC1	100	99.005	ENSPPRG00000013749	SMNDC1	100	84.167	Panthera_pardus
ENSCAPG00000009132	SMNDC1	100	99.005	ENSPTIG00000011451	SMNDC1	100	84.167	Panthera_tigris_altaica
ENSCAPG00000009132	SMNDC1	100	99.005	ENSPTRG00000002937	SMNDC1	100	84.167	Pan_troglodytes
ENSCAPG00000009132	SMNDC1	100	99.005	ENSPANG00000020805	-	100	84.167	Papio_anubis
ENSCAPG00000009132	SMNDC1	100	92.537	ENSPANG00000031346	-	84	92.537	Papio_anubis
ENSCAPG00000009132	SMNDC1	100	78.109	ENSPKIG00000017164	smndc1	100	67.083	Paramormyrops_kingsleyae
ENSCAPG00000009132	SMNDC1	100	96.020	ENSPSIG00000012257	SMNDC1	84	96.020	Pelodiscus_sinensis
ENSCAPG00000009132	SMNDC1	100	69.652	ENSPMGG00000015651	smndc1	84	69.652	Periophthalmus_magnuspinnatus
ENSCAPG00000009132	SMNDC1	100	99.005	ENSPEMG00000022058	Smndc1	100	84.167	Peromyscus_maniculatus_bairdii
ENSCAPG00000009132	SMNDC1	100	64.734	ENSPMAG00000007705	smndc1	85	64.734	Petromyzon_marinus
ENSCAPG00000009132	SMNDC1	100	98.010	ENSPCIG00000018419	SMNDC1	84	98.010	Phascolarctos_cinereus
ENSCAPG00000009132	SMNDC1	96	59.585	ENSPCIG00000009693	-	99	51.948	Phascolarctos_cinereus
ENSCAPG00000009132	SMNDC1	100	72.139	ENSPFOG00000017113	smndc1	100	62.083	Poecilia_formosa
ENSCAPG00000009132	SMNDC1	100	72.637	ENSPLAG00000010372	smndc1	100	62.500	Poecilia_latipinna
ENSCAPG00000009132	SMNDC1	100	72.637	ENSPMEG00000012288	smndc1	100	62.500	Poecilia_mexicana
ENSCAPG00000009132	SMNDC1	100	71.642	ENSPREG00000012279	smndc1	100	61.667	Poecilia_reticulata
ENSCAPG00000009132	SMNDC1	100	99.005	ENSPPYG00000002643	SMNDC1	100	84.167	Pongo_abelii
ENSCAPG00000009132	SMNDC1	96	97.409	ENSPCAG00000016183	SMNDC1	100	97.409	Procavia_capensis
ENSCAPG00000009132	SMNDC1	100	98.507	ENSPCOG00000024343	SMNDC1	100	83.750	Propithecus_coquereli
ENSCAPG00000009132	SMNDC1	100	72.139	ENSPVAG00000004368	SMNDC1	100	61.667	Pteropus_vampyrus
ENSCAPG00000009132	SMNDC1	91	64.894	ENSPNYG00000024093	smndc1	82	64.894	Pundamilia_nyererei
ENSCAPG00000009132	SMNDC1	100	72.637	ENSPNAG00000025285	smndc1	100	62.500	Pygocentrus_nattereri
ENSCAPG00000009132	SMNDC1	100	98.507	ENSRNOG00000014833	Smndc1	100	83.750	Rattus_norvegicus
ENSCAPG00000009132	SMNDC1	100	98.507	ENSRBIG00000000224	-	100	83.750	Rhinopithecus_bieti
ENSCAPG00000009132	SMNDC1	100	86.567	ENSRBIG00000032452	-	85	90.270	Rhinopithecus_bieti
ENSCAPG00000009132	SMNDC1	100	87.065	ENSRROG00000039125	-	85	90.811	Rhinopithecus_roxellana
ENSCAPG00000009132	SMNDC1	100	99.005	ENSRROG00000044992	-	100	84.167	Rhinopithecus_roxellana
ENSCAPG00000009132	SMNDC1	100	99.005	ENSSBOG00000026789	SMNDC1	100	84.167	Saimiri_boliviensis_boliviensis
ENSCAPG00000009132	SMNDC1	100	98.010	ENSSHAG00000015189	SMNDC1	84	98.010	Sarcophilus_harrisii
ENSCAPG00000009132	SMNDC1	100	77.114	ENSSFOG00015008311	smndc1	100	66.250	Scleropages_formosus
ENSCAPG00000009132	SMNDC1	100	72.637	ENSSMAG00000020118	smndc1	100	62.500	Scophthalmus_maximus
ENSCAPG00000009132	SMNDC1	100	73.134	ENSSDUG00000015330	smndc1	84	73.134	Seriola_dumerili
ENSCAPG00000009132	SMNDC1	100	73.134	ENSSLDG00000017325	smndc1	100	62.917	Seriola_lalandi_dorsalis
ENSCAPG00000009132	SMNDC1	100	99.502	ENSSARG00000006063	SMNDC1	100	84.583	Sorex_araneus
ENSCAPG00000009132	SMNDC1	100	94.527	ENSSPUG00000004574	SMNDC1	84	94.527	Sphenodon_punctatus
ENSCAPG00000009132	SMNDC1	100	72.277	ENSSPAG00000000338	smndc1	100	60.833	Stegastes_partitus
ENSCAPG00000009132	SMNDC1	100	99.502	ENSSSCG00000030507	SMNDC1	100	84.583	Sus_scrofa
ENSCAPG00000009132	SMNDC1	100	94.527	ENSTGUG00000010599	SMNDC1	84	94.527	Taeniopygia_guttata
ENSCAPG00000009132	SMNDC1	100	70.149	ENSTRUG00000023281	smndc1	100	61.250	Takifugu_rubripes
ENSCAPG00000009132	SMNDC1	100	71.642	ENSTNIG00000013331	smndc1	100	62.500	Tetraodon_nigroviridis
ENSCAPG00000009132	SMNDC1	100	99.502	ENSTBEG00000014337	SMNDC1	100	84.583	Tupaia_belangeri
ENSCAPG00000009132	SMNDC1	100	99.005	ENSUAMG00000008142	SMNDC1	100	84.167	Ursus_americanus
ENSCAPG00000009132	SMNDC1	100	99.005	ENSUMAG00000023722	SMNDC1	100	84.167	Ursus_maritimus
ENSCAPG00000009132	SMNDC1	80	98.137	ENSVPAG00000003402	SMNDC1	81	98.137	Vicugna_pacos
ENSCAPG00000009132	SMNDC1	100	99.005	ENSVVUG00000007820	SMNDC1	100	84.167	Vulpes_vulpes
ENSCAPG00000009132	SMNDC1	71	80.986	ENSXETG00000015415	SMNDC1	100	80.986	Xenopus_tropicalis
ENSCAPG00000009132	SMNDC1	100	71.642	ENSXCOG00000009159	smndc1	100	61.667	Xiphophorus_couchianus
ENSCAPG00000009132	SMNDC1	100	71.144	ENSXMAG00000012755	smndc1	100	61.250	Xiphophorus_maculatus